MELO3C034910 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034910
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein TIC 214
Location	chr08: 25753689 .. 25753855 (-)
RNA-Seq Expression	MELO3C034910
Synteny	MELO3C034910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTCCTGAATCATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGTTGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGG

mRNA sequence

TATTCCTGAATCATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGTTGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGG

Coding sequence (CDS)

ATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGTTGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGG

Protein sequence

MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW

Homology

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BLAST of MELO3C034910 vs. NCBI nr
Match: YP_009753666.1 (Ycf1 protein [Trichosanthes wallichiana] >QIT04685.1 Ycf1 protein [Trichosanthes wallichiana])

HSP 1 Score: 76.6 bits (187), Expect = 4.9e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNISMFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 149 MLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKW 185

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BLAST of MELO3C034910 vs. NCBI nr
Match: QJD26342.1 (Ycf1 [Trichosanthes kirilowii] >QJD26429.1 Ycf1 [Trichosanthes kirilowii])

HSP 1 Score: 76.6 bits (187), Expect = 4.9e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNISMFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 148 MLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKW 184

[Close]

BLAST of MELO3C034910 vs. NCBI nr
Match: YP_009430686.1 (photosystem I assembly protein Ycf1 [Gynostemma cardiospermum] >ART65049.1 photosystem I assembly protein Ycf1 [Gynostemma cardiospermum])

HSP 1 Score: 76.6 bits (187), Expect = 4.9e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNISMFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 148 MLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKW 184

[Close]

BLAST of MELO3C034910 vs. NCBI nr
Match: YP_009738261.1 (Ycf1 [Siraitia siamensis] >QIB71654.1 Ycf1 [Siraitia siamensis])

HSP 1 Score: 76.6 bits (187), Expect = 4.9e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNISMFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 148 MLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKW 184

[Close]

BLAST of MELO3C034910 vs. NCBI nr
Match: YP_009440204.1 (hypothetical chloroplast RF19-like protein [Gynostemma longipes] >ATG86915.1 hypothetical chloroplast RF19-like protein [Gynostemma longipes])

HSP 1 Score: 76.6 bits (187), Expect = 4.9e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNISMFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 148 MLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKW 184

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BLAST of MELO3C034910 vs. ExPASy Swiss-Prot
Match: Q09WW0 (Protein TIC 214 OS=Morus indica OX=248361 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNI MFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 151 MLVRLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKW 187

[Close]

BLAST of MELO3C034910 vs. ExPASy Swiss-Prot
Match: Q14FA0 (Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNI MFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 151 MLVRLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKW 187

[Close]

BLAST of MELO3C034910 vs. ExPASy Swiss-Prot
Match: A4GYX4 (Protein TIC 214 OS=Populus trichocarpa OX=3694 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNI MFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 151 MLVRLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKW 187

[Close]

BLAST of MELO3C034910 vs. ExPASy Swiss-Prot
Match: A4QJH4 (Protein TIC 214 OS=Aethionema cordifolium OX=434059 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.2e-13
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           ML RLVNI MFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 152 MLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKW 188

[Close]

BLAST of MELO3C034910 vs. ExPASy Swiss-Prot
Match: A4QJQ8 (Protein TIC 214 OS=Aethionema grandiflorum OX=72657 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.2e-13
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           ML RLVNI MFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 152 MLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKW 188

[Close]

BLAST of MELO3C034910 vs. ExPASy TrEMBL
Match: A0A6M3S424 (Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNISMFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 148 MLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKW 184

[Close]

BLAST of MELO3C034910 vs. ExPASy TrEMBL
Match: A0A6M3RWE9 (Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNISMFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 148 MLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKW 184

[Close]

BLAST of MELO3C034910 vs. ExPASy TrEMBL
Match: A0A6C0ME96 (Protein TIC 214 OS=Quercus robur OX=38942 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNISMFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 148 MLVRLVNISMFRCNNKILFVTSSFVGWLIGHILFMKW 184

[Close]

BLAST of MELO3C034910 vs. ExPASy TrEMBL
Match: A0A1S4EU51 (Protein TIC 214 OS=Cucumis melo OX=3656 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNISMFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 148 MLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKW 184

[Close]

BLAST of MELO3C034910 vs. ExPASy TrEMBL
Match: A0A1S4EU70 (Protein TIC 214 OS=Cucumis melo OX=3656 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           MLVRLVNISMFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 148 MLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKW 184

[Close]

BLAST of MELO3C034910 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-14
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           ML RLVNI MFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 152 MLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKW 188

[Close]

BLAST of MELO3C034910 vs. TAIR 10
Match: ATCG01000.1 (Ycf1 protein )

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-14
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW 38
           ML RLVNI MFRCNNK+LFVTSSFVGWLIGHILFMKW
Sbjct: 152 MLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKW 188

[Close]

BLAST of MELO3C034910 vs. TAIR 10
Match: AT2G07739.1 (Ycf1 protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.1e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFV 26
           ML RLVNI MFRCNNK+LFVTSSFV
Sbjct: 152 MLARLVNIYMFRCNNKMLFVTSSFV 176

[Close]

BLAST of MELO3C034910 vs. TAIR 10
Match: ATMG00370.1 (Ycf1 protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.1e-05
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1   MLVRLVNISMFRCNNKLLFVTSSFV 26
           ML RLVNI MFRCNNK+LFVTSSFV
Sbjct: 152 MLARLVNIYMFRCNNKMLFVTSSFV 176

The following BLAST results are available for this feature:

BLAST of MELO3C034910 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009753666.1	4.9e-11	97.30	Ycf1 protein [Trichosanthes wallichiana] >QIT04685.1 Ycf1 protein [Trichosanthes...	[more]
QJD26342.1	4.9e-11	97.30	Ycf1 [Trichosanthes kirilowii] >QJD26429.1 Ycf1 [Trichosanthes kirilowii]	[more]
YP_009430686.1	4.9e-11	97.30	photosystem I assembly protein Ycf1 [Gynostemma cardiospermum] >ART65049.1 photo...	[more]
YP_009738261.1	4.9e-11	97.30	Ycf1 [Siraitia siamensis] >QIB71654.1 Ycf1 [Siraitia siamensis]	[more]
YP_009440204.1	4.9e-11	97.30	hypothetical chloroplast RF19-like protein [Gynostemma longipes] >ATG86915.1 hyp...	[more]

BLAST of MELO3C034910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WW0	3.2e-13	94.59	Protein TIC 214 OS=Morus indica OX=248361 GN=TIC214 PE=3 SV=1	[more]
Q14FA0	3.2e-13	94.59	Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1	[more]
A4GYX4	3.2e-13	94.59	Protein TIC 214 OS=Populus trichocarpa OX=3694 GN=TIC214 PE=3 SV=1	[more]
A4QJH4	9.2e-13	91.89	Protein TIC 214 OS=Aethionema cordifolium OX=434059 GN=TIC214 PE=3 SV=1	[more]
A4QJQ8	9.2e-13	91.89	Protein TIC 214 OS=Aethionema grandiflorum OX=72657 GN=TIC214 PE=3 SV=1	[more]

BLAST of MELO3C034910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M3S424	2.4e-11	97.30	Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1	[more]
A0A6M3RWE9	2.4e-11	97.30	Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1	[more]
A0A6C0ME96	2.4e-11	97.30	Protein TIC 214 OS=Quercus robur OX=38942 GN=ycf1 PE=3 SV=1	[more]
A0A1S4EU51	2.4e-11	97.30	Protein TIC 214 OS=Cucumis melo OX=3656 GN=ycf1 PE=3 SV=1	[more]
A0A1S4EU70	2.4e-11	97.30	Protein TIC 214 OS=Cucumis melo OX=3656 GN=ycf1 PE=3 SV=1	[more]

BLAST of MELO3C034910 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01130.1	6.6e-14	91.89	Ycf1 protein	[more]
ATCG01000.1	6.6e-14	91.89	Ycf1 protein	[more]
AT2G07739.1	1.1e-05	88.00	Ycf1 protein	[more]
ATMG00370.1	1.1e-05	88.00	Ycf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 1..37 e-value: 6.1E-20 score: 70.8
IPR008896	Protein TIC214	PANTHER	PTHR33163	PROTEIN TIC 214-RELATED	coord: 1..37
None	No IPR available	PANTHER	PTHR33163:SF13	PROTEIN TIC 214-RELATED	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034910.1	MELO3C034910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane