MELO3C034897 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034897
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Location	chr11: 8620572 .. 8622403 (+)
RNA-Seq Expression	MELO3C034897
Synteny	MELO3C034897

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAACCCTGAATCATTCATGTAAAGATATGGGAGTGGGGGTGTCTTATGTAAATGGTTTGCATAAGATTGGAACCACGAAGTAGTCACTTTAATTAATAACAGAGTAAACTATAAACTACTTTTTTTATGATGACCTAGGTAACTTGATCTTAATCCTGAGCTAACTATGAACTTCTGTTCATTCGGTAGTATCCTTAGATCTGCATAGGTGAGGGCAGCTCAACATCGCTGGCCCAATAAGCCTCCCACTTTAGGGGTAAGACCGAGTGGATAGCTAGGGACATAGGGTGCAAGATGGAATTCAGTGCTACCCACTTCTGGGATAGTAGATAGGTTGTTCCCTTAAGGACTGAATCCAAGTCTTGAACAAGGGGTCCCACCTTCTGATTGGCCCGAGAAGGATTCTGGTTTATAGGTTAGTCCTTAAACCAATTGTTCAATAGTGGGTCTTAAGGAGGAAGATGTCATCTCAGGGGTAAAACGGTACTTTAACCCAGCCAAGATTACGAACAACCTGTGAAGGATCGACTTACCCATTATGGTTATATCAGGTGGACAGAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTGAGTAGAATGACTTTTTAATTAACGAATGTTGATTAACTTTGGTCTAAAAGAGTTTAGCCAGTTAATCTCGGATCGTTGGAGCCCATGAGCTATAGGTCCATTAGGTTCTCCTACTAGCTCATATGGATTAAACTAAGAACAAGTATGTTGAAGTAATTCGAATTGTTCGAATAAAGATAAAGAGAGAGAAACCGACAAATATATAAGATATAAGTCAGTAAAAATAAACTTTAAGTTTTGTGTTTAAATATGATTTAAACAAATATGAATATAGATTCATATTTAAAAGCTTAAAAATTTTAGAGAGCGGTCAAAAAGTCAACATGTTGATTTTGAACTTCGACCGAATTTATTTTCAAATATGATTTGAATTTTAGAGAAATGAATACGGATTCATACTCGGGAGGTTAGAATTAGTCAAGATGGAAAAATTAGTAAAAAGACAAAAAGTTGATTTTCGACTAAGAAAAGTCAAAGTGTAACTTTGAGTAAAGTTGGTCAAATGACCAAAATGCCCCTTTGGTTAATTATTCTATTAATTAATGGTTAATGAGAAATGTGGCAATTAATTGTGAATTTGAAGCTACTAATCCCATTGATAATTAATGGATTAATGAGGTGTTGAATTTATATGAAATAATATTGCATGTAGATTTCATATAAAATTTCTCATTACTGAATGAGAAATTGATGAGTTTTTTGCTCTTGTAAGACCAAAACGATTGACTCCCATCTCTCACAATATTCTCTTCGCATAGTCGAGTCCCACAACTCTGTTCTTGGTTCTGAGCATAGTGGATCAACTTGGTGGTTGTCCTAGCTCGTGTTTTTCAGGCAGAGGAGAAGCGTTAGATTAAAGAAGAGGTTCTGAACTACAAAGGTAAGAACATCGTTTTTCTTCTTCTCTCTTCGTTTATGTCCATCGCATAGCATGTGCATGTTAGCTTCTAAATCGTTTAGATGCATATAGAGTAAAGCATGATCTTTATCTTTCGCTGTTGCATGTCTCTGCTTGGTTTTTGTTTTTCCATAAAAAACAACAGAAGCAGCAACATTGGATGCAAGAGGAACCAAATCAAAAGGAGAAGAAAACAGACATCATGGATGCTGTAATAACGAACATCAGAGGCAAACTTGACAGGAACCCTATTTTGAGTAGAAACCCAAGAAGAACTCATCGTAGGCAGATGAAATAA

mRNA sequence

ATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAACCCTGAATCATTCATGTAAAGATATGGGAGTGGGGGTGTCTTATGTGAGGGCAGCTCAACATCGCTGGCCCAATAAGCCTCCCACTTTAGGGAGAAATGAATACGGATTCATACTCGGGAGGTTAGAATTAGTCAAGATGGAAAAATTAAAGCAGCAACATTGGATGCAAGAGGAACCAAATCAAAAGGAGAAGAAAACAGACATCATGGATGCTGTAATAACGAACATCAGAGGCAAACTTGACAGGAACCCTATTTTGAGTAGAAACCCAAGAAGAACTCATCGTAGGCAGATGAAATAA

Coding sequence (CDS)

ATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAACCCTGAATCATTCATGTAAAGATATGGGAGTGGGGGTGTCTTATGTGAGGGCAGCTCAACATCGCTGGCCCAATAAGCCTCCCACTTTAGGGAGAAATGAATACGGATTCATACTCGGGAGGTTAGAATTAGTCAAGATGGAAAAATTAAAGCAGCAACATTGGATGCAAGAGGAACCAAATCAAAAGGAGAAGAAAACAGACATCATGGATGCTGTAATAACGAACATCAGAGGCAAACTTGACAGGAACCCTATTTTGAGTAGAAACCCAAGAAGAACTCATCGTAGGCAGATGAAATAA

Protein sequence

MDAARSVVSTNDVTLNHSCKDMGVGVSYVRAAQHRWPNKPPTLGRNEYGFILGRLELVKMEKLKQQHWMQEEPNQKEKKTDIMDAVITNIRGKLDRNPILSRNPRRTHRRQMK

Homology

[Close]

BLAST of MELO3C034897 vs. NCBI nr
Match: KAA0045355.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-11
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 2   DAARSVVSTNDVTLNHSCKDMGVGVSYVRAAQHRWPNKPPTLG 45
           DAARSV+STNDV LN SC+DMG G SYVRAAQHRWPNKPP LG
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASYVRAAQHRWPNKPPILG 153

[Close]

BLAST of MELO3C034897 vs. NCBI nr
Match: KAA0041137.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-04
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 4    ARSVVSTNDVTLNHSCKDMGVGVSYVRAAQHRWPNKPP 42
            ARSVVSTNDV LN SC+DMG     V+A Q RWPNKPP
Sbjct: 1002 ARSVVSTNDVILNRSCRDMG-----VKAVQWRWPNKPP 1034

[Close]

BLAST of MELO3C034897 vs. ExPASy TrEMBL
Match: A0A5A7TVE0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001340 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.0e-12
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 2   DAARSVVSTNDVTLNHSCKDMGVGVSYVRAAQHRWPNKPPTLG 45
           DAARSV+STNDV LN SC+DMG G SYVRAAQHRWPNKPP LG
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASYVRAAQHRWPNKPPILG 153

[Close]

BLAST of MELO3C034897 vs. ExPASy TrEMBL
Match: A0A5A7THN2 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00500 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 4    ARSVVSTNDVTLNHSCKDMGVGVSYVRAAQHRWPNKPP 42
            ARSVVSTNDV LN SC+DMG     V+A Q RWPNKPP
Sbjct: 1002 ARSVVSTNDVILNRSCRDMG-----VKAVQWRWPNKPP 1034

The following BLAST results are available for this feature:

BLAST of MELO3C034897 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045355.1	1.0e-11	83.72	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
KAA0041137.1	2.1e-04	71.05	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034897 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVE0	5.0e-12	83.72	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5A7THN2	1.0e-04	71.05	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MELO3C034897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034897.1	MELO3C034897.1	mRNA