MELO3C034896 (gene) Melon (DHL92) v4

Overview
NameMELO3C034896
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Description30-kDa cleavage and polyadenylation specificity factor 30-like
Locationchr11: 8569260 .. 8572713 (+)
RNA-Seq ExpressionMELO3C034896
SyntenyMELO3C034896
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACATTTTCATCTCTATCCATCGTCGTTGTCTCTGTTCGTCCGTCTCTCTATTCATCATCACTTTCATCACACGATTTCCCTAGAATATTCTATTTTTCAGCTTCAATCTCTCAGACTTGCAATCTTTTAGCTTCATCTAATCTCTCACCGTCGTCCACATGGGTTTTGCTTAGGGTTCTTTGTCTACCAGCTCGTCTCTCTACTGCTATTAGACACTTGAAGCTTATGATTCGAGGTTAGTCTTCTTTTTCCTTTCTTCTACATCGTTTTTATGGTGAGAGCACTGAGTGAAATATCAATAAGGAGTTTTAAACATATGGAATGATTTTGTTTTAAGTTTTAAATATCTTTTCTTTGAGGTTGATAATAATGAGATCTGTTTCTTTAGATTATAACAAGCTTAATGGTCTTGCTTATGGTCTGATATGAATAGGCTTGCGCACCTCTAGTCTTTAGGCTTTAAACAGTTGGTATTTTGATGTTTTAGCTTAAAAAATCCTTCCACATTTGTTCTTCATATTTTTCTTCGTGCCCTGATCTCCAATTTTTGTTTATTCCATGAATCCCTTTCATGTTTTTGTTCTTAAAAAATTTATTGTGGTTTTGCTTTGTTAACTGATTTTTTGCAGTTTTAATCCCTCACAGCAAAGGCTTCTCTTTCTATTATTAAATCCTCCATTTGCTCGATGAAATTGAAATTAGAGATTTGCAACTATAGGAAATTTTGCACAACCCCTTTCTGTCTTTCATAACATATCTCTCTCCCACATCCTACGACCTTTTTCTGTTGTTTTCACTTCCACGTATTATTTTGGGATGCTTTCTAATGCACATATAATGTAACTTTTGTAGTCATGGGTACATTGTATAGTACAAGACTGCCTATTAATCATTTTACCTTTCCGTGAGTAGCTTTTCCTTGCTCCACTTTAAGAAATCAGTGTTTGTGAAGTATATAAAGACTAGCTTAAATGAAACTATTTAAGTGTACATCACCTCTATTCATAATGCTTTTATGTTCATGTTTTTATGGGTAAAGTTGAGTTCTTACAATGTTGTTTGTATCTTGAATGTTGTTAACTTCTTTCAATTTGTGAGTGATTGCATAGACTTTTAATGGTTAGGAAAATTCTGAGGCAGCAAAAATTGTTGATCTTATTAAGCTTGAACTGTAGAGTTTTCTTTTGGAAAACTTCATAACTTATATTCTCTTCTCCCAATTATTAATTTAAGTTGCAAGTAATTTTTAACATTATGCTCCTAGAAGTGAACTCTTGTTCTGTTGTCACCTTTCAGTTTTAGCAAGTCATGTTCATCTAATTAATTGTTCTTAAAATCACACGTTTGTGTTGCTTTGTACTCTAATGGATTGTGATATCAATTTCTCCATTTAAATTCATCTCTTGGTTTGAGGAAGAATGTCTTATTCTTTGTGATAACGGAAACATAGTAGGTTCTTGTTAATGATGATGTTTTCTGTATGCTCTTAAACTGTTTGATGAAATGCCCAAAAGAAAGTTAGAGTTGAATTCCCACATGTTTATGTGATTATGAAGTTGGGTGGTTTTCTTGTATGTGTTTGTTTCTTTGCTTAGTTGTTAAAACTATACATTTTTCTCAATAAAGAAAATATTGAGTAAGTTTATGTTACTCAATATCAGTTTCTGCCCACCAACTGAGCAAGATATTCAAAAAGGGAATAGTTTGGTAATGTTCCTTTTATTTTACATCCCTTTTAGAACTTCTCTTTAAAATTTTCAACTAGAATATGAATGAGTAAATGTGCCTGCAGCCAGGTCATGGTGGTGTACAATCCTCTTGGATGGATCCGTAATGATGTTGTTAGAATACCGGTGAGTAGAAATTTGCTTTTGCTTGCATGTTTCACATTCCAGACAATGGAATGACTTGGACTATTACTACATTTACAATCGAGGGAAATATGAATTAGAAGAGAAAAATGGAATTTGTTATCTATGATTTATCATCATCATTATTTTTATGCATAGTTTTTTACTCTTTATAAAAATATGCTCTTGGATTTACTGAAGTTTCAGTGAGTTTATTTCCAGAAAACCAGGTTCAAACCATTGAGTTTTGGGTTCTTTTGACACTTATGGTTCTTTGTTGCTGCAATTGATAGAATAGGATGTAAACTTGTTCAGTCATATGTGATTGTGATATTGTGAGATTTATCCAAATAATATTTAATGAGCAAGCTGGTAATTGATGGAGGCATTTGCTGTGATTTTTTGTCAGCGAGGAGTGATATTATTGAAGAACTATAGTATCTTAAATGTTGATCTTCTCAATCTTCTCTTGCTATGGAAGTATCCTTTTCAGTTCTGTAACCTTTTCCATTCATCTTCTGATAAAGACATGGTTACTCATTTTTAATATAATTCTGCAAAACAAATGAAAATAAAAATTTGACTCTCACATGAACCTTTTAAATACTCTAAATGACCTCATTTATTTTTGAAAGATTAGGTACTTTATTGTTAAAAGGTGGAACTTTGAGAAATTTGGAGTTATCTGTATAACAAGGGGCAGTTGCAACTTAAAGAAGCAATGAAGCTTTTATTTTTGGTGATAATGTTAGCTTTTCTCAGTCAACCGGACTACACTTCTTCAGGTGCTAACCATTCCTTATTGAATTTGTGTGTGACGCTACTTGGTCATTGATGAACAAAGTATGTTTGTTTGAGATAATTATACTGATTTGCTATTGGCTGCTTAGGCTTGTGAAAAGATGATGTCCAGAATTGGTGGTTCTGTTAGTGGGAGCAATTGGAAATATGCACATGGAACTGCATATTATGGTCAAAATTTTTCACTCAAATGGCTGAAGGTTGATATTTCATTTCTTAGATTTATAATTTTATGTAGAAATTTATATGACATGTGTACCTCATCATGTTGTTGCATTGTTGTTAGTTGCAATAATGCTAATGGATGTTTGCCCTCTCTGGCCCACCAGAACATCTAATTTACTCTCAGTGGTCATATTTGGTGCTCATTAAAAATGAAACTGAATTATTCTTTTTTAATCTCTGATAATGAACATTTTTTCTTTTTCTCATAATTGAAAGAAAAATTCAGGTCGAGACGACAATTTCAACAACTAAGGTGACCATCGGTATGCTATATTTTTTATCTTTTTTTATCTACATTTGTTAAAGATTTTCTATGTTTTTTTTAATTAATATCCACTATTATTGGTGTCTAAAAAATCACATATTGATATATGTTTTATAAATTTATGCAGGTGAATGAAATGTGTCTTACCAGAGGAAAAAAGATCCTACGATGACAATACCTTATATGATAATATAATCTTGGACACTTGGTGAATTTTGTTTGTATTTTAAGGGTTATTTTGTGTTGTGCTACATTCACTAAATACTTTATCTACATTTGTATCATTTAGACCACAACTTTATTTGAG

mRNA sequence

ATGAAGACATTTTCATCTCTATCCATCGTCGTTGTCTCTGTTCGTCCGTCTCTCTATTCATCATCACTTTCATCACACGATTTCCCTAGAATATTCTATTTTTCAGCTTCAATCTCTCAGACTTGCAATCTTTTAGCTTCATCTAATCTCTCACCGTCGTCCACATGGGTTTTGCTTAGGGTTCTTTGTCTACCAGCTCGTCTCTCTACTGCTATTAGACACTTGAAGCTTATGATTCGAGGAAATTTTGCACAACCCCTTTCTGTCTTTCATAACATATCTCTCTCCCACATCCTACGACCTTTTTCTGTTGTTTTCACTTCCACGTATTATTTTGGGATGCTTTCTAATGCACATATAATCCAGGTCATGGTGGTGTACAATCCTCTTGGATGGATCCGTAATGATGTTGTTAGAATACCGCGAGGAGTGATATTATTGAAGAACTATAGTATCTTAAATGTTGATCTTCTCAATCTTCTCTTGCTATGGAAGTATCCTTTTCAGTTCTGTAACCTTTTCCATTCATCTTCTGATAAAGACATGGCTTGTGAAAAGATGATGTCCAGAATTGGTGGTTCTGTTAGTGGGAGCAATTGGAAATATGCACATGGAACTGCATATTATGGTCAAAATTTTTCACTCAAATGGCTGAAGGTGAATGAAATGTGTCTTACCAGAGGAAAAAAGATCCTACGATGACAATACCTTATATGATAATATAATCTTGGACACTTGGTGAATTTTGTTTGTATTTTAAGGGTTATTTTGTGTTGTGCTACATTCACTAAATACTTTATCTACATTTGTATCATTTAGACCACAACTTTATTTGAG

Coding sequence (CDS)

ATGAAGACATTTTCATCTCTATCCATCGTCGTTGTCTCTGTTCGTCCGTCTCTCTATTCATCATCACTTTCATCACACGATTTCCCTAGAATATTCTATTTTTCAGCTTCAATCTCTCAGACTTGCAATCTTTTAGCTTCATCTAATCTCTCACCGTCGTCCACATGGGTTTTGCTTAGGGTTCTTTGTCTACCAGCTCGTCTCTCTACTGCTATTAGACACTTGAAGCTTATGATTCGAGGAAATTTTGCACAACCCCTTTCTGTCTTTCATAACATATCTCTCTCCCACATCCTACGACCTTTTTCTGTTGTTTTCACTTCCACGTATTATTTTGGGATGCTTTCTAATGCACATATAATCCAGGTCATGGTGGTGTACAATCCTCTTGGATGGATCCGTAATGATGTTGTTAGAATACCGCGAGGAGTGATATTATTGAAGAACTATAGTATCTTAAATGTTGATCTTCTCAATCTTCTCTTGCTATGGAAGTATCCTTTTCAGTTCTGTAACCTTTTCCATTCATCTTCTGATAAAGACATGGCTTGTGAAAAGATGATGTCCAGAATTGGTGGTTCTGTTAGTGGGAGCAATTGGAAATATGCACATGGAACTGCATATTATGGTCAAAATTTTTCACTCAAATGGCTGAAGGTGAATGAAATGTGTCTTACCAGAGGAAAAAAGATCCTACGATGA

Protein sequence

MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILRPFSVVFTSTYYFGMLSNAHIIQVMVVYNPLGWIRNDVVRIPRGVILLKNYSILNVDLLNLLLLWKYPFQFCNLFHSSSDKDMACEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKILR
Homology
[Close]
BLAST of MELO3C034896 vs. NCBI nr
Match: KAA0063708.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-53
Identity = 136/219 (62.10%), Postives = 147/219 (67.12%), Query Frame = 0 

Query: 1   MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLR 60
           MKT SSLSIVVVSVRPSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLR
Sbjct: 1   MKTLSSLSIVVVSVRPSLCSSSLSSHDFPRISYFSASISQTCNLLASSNLSPSSTWVLLR 60

Query: 61  VLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILRPFSVVFTSTYYFGMLSNAHI 120
           VLCL ARLSTAIRHLKLMIR   +  LS+  +   S  L+              L   + 
Sbjct: 61  VLCLLARLSTAIRHLKLMIRAKTS--LSIIKSSICSMKLK--------------LEICNY 120

Query: 121 IQVMVVYNPLGWIRNDVVRIPRGVILLKNYSILNVDLLNLLLLWKYPFQFCNLFHSSSDK 180
            QVM +YN LGWIRNDVVRIP  +                        + C++     D 
Sbjct: 121 SQVMAMYNFLGWIRNDVVRIPNRM------------------------ETCSVI---CDC 176

Query: 181 DMACEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLK 220
           D+ACEKMMSRIGGSVS  NWKYAHGTAYYGQNFSLKWLK
Sbjct: 181 DIACEKMMSRIGGSVSEGNWKYAHGTAYYGQNFSLKWLK 176

[Close]
BLAST of MELO3C034896 vs. NCBI nr
Match: KAA0051857.1 (alpha-mannosidase [Cucumis melo var. makuwa] >TYK21382.1 alpha-mannosidase [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 3.0e-37
Identity = 102/158 (64.56%), Postives = 115/158 (72.78%), Query Frame = 0 

Query: 1   MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLR 60
           MKT SSLS+VVVSVRPSL SSSLSSHDFPRI YFS+SISQTCNLLASSNLSPSSTW LLR
Sbjct: 1   MKTLSSLSLVVVSVRPSLCSSSLSSHDFPRISYFSSSISQTCNLLASSNLSPSSTWALLR 60

Query: 61  VLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILRPFSVVFTSTYYFGMLSNAHI 120
           VLCLPARLSTAIRHLKLMIR   +  LS+  +   S  L+              L   + 
Sbjct: 61  VLCLPARLSTAIRHLKLMIRAQAS--LSIIKSSVCSMKLK--------------LEICNY 120

Query: 121 IQVMVVYNPLGWIRNDVVRIP--RGVILLKNYSILNVD 157
            QVMVVYNPLGWIRNDVVRIP  R ++LL  ++   ++
Sbjct: 121 SQVMVVYNPLGWIRNDVVRIPVSRNLLLLACFTFQTME 142

[Close]
BLAST of MELO3C034896 vs. NCBI nr
Match: TYK08787.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-29
Identity = 79/92 (85.87%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1   MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLR 60
           MKT SSLSIVVVSV PSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLR
Sbjct: 271 MKTLSSLSIVVVSVHPSLCSSSLSSHDFPRISYFSASISQTCNLLASSNLSPSSTWVLLR 330

Query: 61  VLCLPARLSTAIRHLKLMIRGNFAQPLSVFHN 93
           VLCLPARLSTAIRHLKLMIRG     L   +N
Sbjct: 331 VLCLPARLSTAIRHLKLMIRGLRTSSLLALNN 362

[Close]
BLAST of MELO3C034896 vs. NCBI nr
Match: KAA0045310.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-29
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLR 60
           MKT SSLSIVVVSV PSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLR
Sbjct: 122 MKTLSSLSIVVVSVHPSLCSSSLSSHDFPRISYFSASISQTCNLLASSNLSPSSTWVLLR 181

Query: 61  VLCLPARLSTAIRHLKLMIRG 82
           VLCLPARLSTAIRHLKLMIRG
Sbjct: 182 VLCLPARLSTAIRHLKLMIRG 202

[Close]
BLAST of MELO3C034896 vs. NCBI nr
Match: XP_008445183.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo] >KAA0036926.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa] >TYK05548.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 8.1e-11
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 184 CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI 232
           C KMMSRIGGSVSG NWKYAHGTA+YGQNFSLKWLK+ E+   + + +
Sbjct: 322 CAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHL 369

[Close]
BLAST of MELO3C034896 vs. ExPASy Swiss-Prot
Match: Q0DA50 (Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0677700 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-09
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 184 CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEM 224
           C KM SRIGG + G NWK AHGTA+YG+NFS++WLK+ E+
Sbjct: 317 CAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCEL 356

[Close]
BLAST of MELO3C034896 vs. ExPASy Swiss-Prot
Match: A9LNK9 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana OX=3702 GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-09
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 184 CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI 232
           C KM SRIGG + G NWK+ HGTA YG+NFS+KWLK+ E+   + + +
Sbjct: 294 CAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFHKTRNL 341

[Close]
BLAST of MELO3C034896 vs. ExPASy TrEMBL
Match: A0A5A7V801 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002310 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 8.3e-54
Identity = 136/219 (62.10%), Postives = 147/219 (67.12%), Query Frame = 0 

Query: 1   MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLR 60
           MKT SSLSIVVVSVRPSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLR
Sbjct: 1   MKTLSSLSIVVVSVRPSLCSSSLSSHDFPRISYFSASISQTCNLLASSNLSPSSTWVLLR 60

Query: 61  VLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILRPFSVVFTSTYYFGMLSNAHI 120
           VLCL ARLSTAIRHLKLMIR   +  LS+  +   S  L+              L   + 
Sbjct: 61  VLCLLARLSTAIRHLKLMIRAKTS--LSIIKSSICSMKLK--------------LEICNY 120

Query: 121 IQVMVVYNPLGWIRNDVVRIPRGVILLKNYSILNVDLLNLLLLWKYPFQFCNLFHSSSDK 180
            QVM +YN LGWIRNDVVRIP  +                        + C++     D 
Sbjct: 121 SQVMAMYNFLGWIRNDVVRIPNRM------------------------ETCSVI---CDC 176

Query: 181 DMACEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLK 220
           D+ACEKMMSRIGGSVS  NWKYAHGTAYYGQNFSLKWLK
Sbjct: 181 DIACEKMMSRIGGSVSEGNWKYAHGTAYYGQNFSLKWLK 176

[Close]
BLAST of MELO3C034896 vs. ExPASy TrEMBL
Match: A0A5D3DCT3 (Alpha-mannosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00270 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 102/158 (64.56%), Postives = 115/158 (72.78%), Query Frame = 0 

Query: 1   MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLR 60
           MKT SSLS+VVVSVRPSL SSSLSSHDFPRI YFS+SISQTCNLLASSNLSPSSTW LLR
Sbjct: 1   MKTLSSLSLVVVSVRPSLCSSSLSSHDFPRISYFSSSISQTCNLLASSNLSPSSTWALLR 60

Query: 61  VLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILRPFSVVFTSTYYFGMLSNAHI 120
           VLCLPARLSTAIRHLKLMIR   +  LS+  +   S  L+              L   + 
Sbjct: 61  VLCLPARLSTAIRHLKLMIRAQAS--LSIIKSSVCSMKLK--------------LEICNY 120

Query: 121 IQVMVVYNPLGWIRNDVVRIP--RGVILLKNYSILNVD 157
            QVMVVYNPLGWIRNDVVRIP  R ++LL  ++   ++
Sbjct: 121 SQVMVVYNPLGWIRNDVVRIPVSRNLLLLACFTFQTME 142

[Close]
BLAST of MELO3C034896 vs. ExPASy TrEMBL
Match: A0A5D3C9X4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1300G00140 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.4e-30
Identity = 79/92 (85.87%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1   MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLR 60
           MKT SSLSIVVVSV PSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLR
Sbjct: 271 MKTLSSLSIVVVSVHPSLCSSSLSSHDFPRISYFSASISQTCNLLASSNLSPSSTWVLLR 330

Query: 61  VLCLPARLSTAIRHLKLMIRGNFAQPLSVFHN 93
           VLCLPARLSTAIRHLKLMIRG     L   +N
Sbjct: 331 VLCLPARLSTAIRHLKLMIRGLRTSSLLALNN 362

[Close]
BLAST of MELO3C034896 vs. ExPASy TrEMBL
Match: A0A5A7TQ62 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00770 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLR 60
           MKT SSLSIVVVSV PSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLR
Sbjct: 122 MKTLSSLSIVVVSVHPSLCSSSLSSHDFPRISYFSASISQTCNLLASSNLSPSSTWVLLR 181

Query: 61  VLCLPARLSTAIRHLKLMIRG 82
           VLCLPARLSTAIRHLKLMIRG
Sbjct: 182 VLCLPARLSTAIRHLKLMIRG 202

[Close]
BLAST of MELO3C034896 vs. ExPASy TrEMBL
Match: A0A5D3C2W1 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00560 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-11
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0 

Query: 184 CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI 232
           C KMMSRIGGSVSG NWKYAHGTA+YGQNFSLKWLK+ E+   + + +
Sbjct: 322 CAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHL 369

[Close]
BLAST of MELO3C034896 vs. TAIR 10
Match: AT1G30460.1 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-10
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 184 CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI 232
           C KM SRIGG + G NWK+ HGTA YG+NFS+KWLK+ E+   + + +
Sbjct: 294 CAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFHKTRNL 341

The following BLAST results are available for this feature:
BLAST of MELO3C034896 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0063708.11.7e-5362.1030-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var... [more]
KAA0051857.13.0e-3764.56alpha-mannosidase [Cucumis melo var. makuwa] >TYK21382.1 alpha-mannosidase [Cucu... [more]
TYK08787.11.3e-2985.87gag/pol protein [Cucumis melo var. makuwa][more]
KAA0045310.12.3e-2995.06gag/pol protein [Cucumis melo var. makuwa][more]
XP_008445183.18.1e-1170.83PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis me... [more]
BLAST of MELO3C034896 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q0DA502.1e-0965.00Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX... [more]
A9LNK92.1e-0954.1730-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thalian... [more]
BLAST of MELO3C034896 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V8018.3e-5462.1030-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo v... [more]
A0A5D3DCT31.4e-3764.56Alpha-mannosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00... [more]
A0A5D3C9X46.4e-3085.87Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1300G001... [more]
A0A5A7TQ621.1e-2995.06Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0077... [more]
A0A5D3C2W13.9e-1170.8330-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. m... [more]
BLAST of MELO3C034896 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G30460.11.5e-1054.17cleavage and polyadenylation specificity factor 30 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007275YTH domainPROSITEPS50882YTHcoord: 108..233
score: 8.908821

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034896.1MELO3C034896.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding