MELO3C034889 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034889
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr11: 24633812 .. 24634219 (+)
RNA-Seq Expression	MELO3C034889
Synteny	MELO3C034889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCCCTGCTATGTGCAGCCCGAGGATGAACATGTCCCCTGAGAACATGATGGGCGGTAGATCAGGTCGGTCGAATGATGGTAGAATGGGCTCTAATGGACAGAAAAGGAAGCACTCCATGCAGCAGTTTGAGACGTACGACCTGATTCACGAATGTATGGAGGCTGCGACTGATCAACTGAGAACCATTGCAGAATGGCCGGAGAAATTTATGAGTTGGGAGGACGCGATGGCGGCTCAGGTGATTGAGCTTATAGAAGCCATCCCAAACCTTACTATGGCGGAGAAGAGTAAGTGTGTCATGCTAGTGAATCAGAAGGTGTCGCTCATGAGAAGCTTCATCAAGATGCCCGATTCGATGAAGGCCATTTACGGTAGGATCCTCCTTGGCGGTAACCTGTGA

mRNA sequence

ATGGAGTTCCCTGCTATGTGCAGCCCGAGGATGAACATGTCCCCTGAGAACATGATGGGCGGTAGATCAGGTCGGTCGAATGATGGTAGAATGGGCTCTAATGGACAGAAAAGGAAGCACTCCATGCAGCAGTTTGAGACGTACGACCTGATTCACGAATGTATGGAGGCTGCGACTGATCAACTGAGAACCATTGCAGAATGGCCGGAGAAATTTATGAGTTGGGAGGACGCGATGGCGGCTCAGGTGATTGAGCTTATAGAAGCCATCCCAAACCTTACTATGGCGGAGAAGAGTAAGTGTGTCATGCTAGTGAATCAGAAGGTGTCGCTCATGAGAAGCTTCATCAAGATGCCCGATTCGATGAAGGCCATTTACGGTAGGATCCTCCTTGGCGGTAACCTGTGA

Coding sequence (CDS)

ATGGAGTTCCCTGCTATGTGCAGCCCGAGGATGAACATGTCCCCTGAGAACATGATGGGCGGTAGATCAGGTCGGTCGAATGATGGTAGAATGGGCTCTAATGGACAGAAAAGGAAGCACTCCATGCAGCAGTTTGAGACGTACGACCTGATTCACGAATGTATGGAGGCTGCGACTGATCAACTGAGAACCATTGCAGAATGGCCGGAGAAATTTATGAGTTGGGAGGACGCGATGGCGGCTCAGGTGATTGAGCTTATAGAAGCCATCCCAAACCTTACTATGGCGGAGAAGAGTAAGTGTGTCATGCTAGTGAATCAGAAGGTGTCGCTCATGAGAAGCTTCATCAAGATGCCCGATTCGATGAAGGCCATTTACGGTAGGATCCTCCTTGGCGGTAACCTGTGA

Protein sequence

MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGNL

Homology

[Close]

BLAST of MELO3C034889 vs. NCBI nr
Match: KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 4.2e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 60
           MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD
Sbjct: 79  MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 138

Query: 61  QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 120
           QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD
Sbjct: 139 QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 198

Query: 121 SMKAIYGRILLGGNL 136
           SMKAIYGRILLGGNL
Sbjct: 199 SMKAIYGRILLGGNL 213

[Close]

BLAST of MELO3C034889 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.4 bits (581), Expect = 3.7e-56
Identity = 116/134 (86.57%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 60
           MEFP MCSPRMNMSP++MMGGRSGRS+DGR GS+ QKRKHSMQQFETYDLI ECMEAATD
Sbjct: 58  MEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATD 117

Query: 61  QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 120
           QLRTIAEWP+K MSWED MAAQVIELI+AI NLTMAEKSKCVMLVNQKVSLMRSFIKMPD
Sbjct: 118 QLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 177

Query: 121 SMKAIYGRILLGGN 135
            MKA Y R+LLGG+
Sbjct: 178 LMKAAYCRVLLGGD 191

[Close]

BLAST of MELO3C034889 vs. NCBI nr
Match: KAA0064184.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-42
Identity = 94/129 (72.87%), Postives = 106/129 (82.17%), Query Frame = 0


Query: 1   MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 60
           MEFPAMC PRMNMSP++MM GRS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATD
Sbjct: 200 MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 259

Query: 61  QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 120
           QLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 260 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 319

Query: 121 SMKAIYGRI 130
           SMK  Y ++
Sbjct: 320 SMKTAYCKV 328

[Close]

BLAST of MELO3C034889 vs. NCBI nr
Match: TYK02844.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-42
Identity = 94/129 (72.87%), Postives = 106/129 (82.17%), Query Frame = 0


Query: 1   MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 60
           MEFPAMC PRMNMSP++MM GRS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATD
Sbjct: 87  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 146

Query: 61  QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 120
           QLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 147 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 206

Query: 121 SMKAIYGRI 130
           SMK  Y ++
Sbjct: 207 SMKTAYCKV 215

[Close]

BLAST of MELO3C034889 vs. NCBI nr
Match: KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 7.4e-33
Identity = 85/135 (62.96%), Postives = 97/135 (71.85%), Query Frame = 0


Query: 1   MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 60
           MEFPAMCSPRMNMSPE+M+GGRS RS+DGR GS+ QKRK SMQQFET+DLI E       
Sbjct: 99  MEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE------- 158

Query: 61  QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 120
                                QVIEL+E IPNLTMAEKSKC+M++NQKVSLMRSFIKM D
Sbjct: 159 --------------------LQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSD 206

Query: 121 SMKAIYGRILLGGNL 136
           SM A Y ++LLGG+L
Sbjct: 219 SMMAAYCKVLLGGDL 206

[Close]

BLAST of MELO3C034889 vs. ExPASy TrEMBL
Match: A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.0e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 60
           MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD
Sbjct: 79  MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 138

Query: 61  QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 120
           QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD
Sbjct: 139 QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 198

Query: 121 SMKAIYGRILLGGNL 136
           SMKAIYGRILLGGNL
Sbjct: 199 SMKAIYGRILLGGNL 213

[Close]

BLAST of MELO3C034889 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.8e-56
Identity = 116/134 (86.57%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 60
           MEFP MCSPRMNMSP++MMGGRSGRS+DGR GS+ QKRKHSMQQFETYDLI ECMEAATD
Sbjct: 58  MEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATD 117

Query: 61  QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 120
           QLRTIAEWP+K MSWED MAAQVIELI+AI NLTMAEKSKCVMLVNQKVSLMRSFIKMPD
Sbjct: 118 QLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 177

Query: 121 SMKAIYGRILLGGN 135
            MKA Y R+LLGG+
Sbjct: 178 LMKAAYCRVLLGGD 191

[Close]

BLAST of MELO3C034889 vs. ExPASy TrEMBL
Match: A0A5D3BUJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00420 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 94/129 (72.87%), Postives = 106/129 (82.17%), Query Frame = 0


Query: 1   MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 60
           MEFPAMC PRMNMSP++MM GRS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATD
Sbjct: 87  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 146

Query: 61  QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 120
           QLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 147 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 206

Query: 121 SMKAIYGRI 130
           SMK  Y ++
Sbjct: 207 SMKTAYCKV 215

[Close]

BLAST of MELO3C034889 vs. ExPASy TrEMBL
Match: A0A5A7VAC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001190 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 94/129 (72.87%), Postives = 106/129 (82.17%), Query Frame = 0


Query: 1   MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 60
           MEFPAMC PRMNMSP++MM GRS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATD
Sbjct: 200 MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 259

Query: 61  QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 120
           QLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 260 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 319

Query: 121 SMKAIYGRI 130
           SMK  Y ++
Sbjct: 320 SMKTAYCKV 328

[Close]

BLAST of MELO3C034889 vs. ExPASy TrEMBL
Match: A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.6e-33
Identity = 85/135 (62.96%), Postives = 97/135 (71.85%), Query Frame = 0


Query: 1   MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 60
           MEFPAMCSPRMNMSPE+M+GGRS RS+DGR GS+ QKRK SMQQFET+DLI E       
Sbjct: 99  MEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE------- 158

Query: 61  QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 120
                                QVIEL+E IPNLTMAEKSKC+M++NQKVSLMRSFIKM D
Sbjct: 159 --------------------LQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSD 206

Query: 121 SMKAIYGRILLGGNL 136
           SM A Y ++LLGG+L
Sbjct: 219 SMMAAYCKVLLGGDL 206

The following BLAST results are available for this feature:

BLAST of MELO3C034889 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C034889 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033551.1	4.2e-68	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p...	[more]
KAA0048148.1	3.7e-56	86.57	retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p...	[more]
KAA0064184.1	2.3e-42	72.87	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02844.1	2.3e-42	72.87	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055070.1	7.4e-33	62.96	retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon p...	[more]

BLAST of MELO3C034889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B9T0	2.0e-68	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TYU4	1.8e-56	86.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BUJ4	1.1e-42	72.87	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VAC3	1.1e-42	72.87	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DLC6	3.6e-33	62.96	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C034889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034889.1	MELO3C034889.1	mRNA