MELO3C034831 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034831
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PHD finger protein ALFIN-LIKE 3-like
Location	chr11: 20969592 .. 20969863 (-)
RNA-Seq Expression	MELO3C034831
Synteny	MELO3C034831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGCACTTGTTGATATGATGTAATTTACTGTGTTGATTACTCGGATTGATTACATATTCTATCTTTCAAGAATATTCAGAGTAAAGCTGAAATGCAAGGAATGTGCGCAAGGCAGTTGCAGGCAAGGGAAGAGGTAGAGACGTATGAAGAAAATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGCCGTGAGAACTATGCTTCAGATGAATTTTGGATTTGTTGTGATATCTATGATAAATGGTTCCATGGGAAATTTGTTGTAGGA

mRNA sequence

AAGGCACTTGTTGATATGATGTAATTTACTGTGTTGATTACTCGGATTGATTACATATTCTATCTTTCAAGAATATTCAGAGTAAAGCTGAAATGCAAGGAATGTGCGCAAGGCAGTTGCAGGCAAGGGAAGAGGTAGAGACGTATGAAGAAAATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGCCGTGAGAACTATGCTTCAGATGAATTTTGGATTTGTTGTGATATCTATGATAAATGGTTCCATGGGAAATTTGTTGTAGGA

Coding sequence (CDS)

ATGCAAGGAATGTGCGCAAGGCAGTTGCAGGCAAGGGAAGAGGTAGAGACGTATGAAGAAAATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGCCGTGAGAACTATGCTTCAGATGAATTTTGGATTTGTTGTGATATCTATGATAAATGGTTCCATGGGAAATTTGTTGTAGGA

Protein sequence

MQGMCARQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVVG

Homology

[Close]

BLAST of MELO3C034831 vs. ExPASy Swiss-Prot
Match: Q5XEM9 (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.1e-14
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 9   LQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFV 59
           L+  E  E  +E+EDEHG+TLC AC +NYASDEFWICCD+ +KWFHG+ V
Sbjct: 186 LELEEGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]

BLAST of MELO3C034831 vs. ExPASy Swiss-Prot
Match: Q9FFF5 (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-13
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 16  ETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFV 59
           E+YE+ +DEHGDTLC +C  NY +DEFWICCD+ ++W+HGK V
Sbjct: 174 ESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C034831 vs. ExPASy Swiss-Prot
Match: Q9M2B4 (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.7e-12
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 2   QGMCARQLQAREEVETY-EENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFV 59
           +G  ++  Q +EE E   E++ED+HG+TLC AC ++  +DEFWICCD+ +KWFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

[Close]

BLAST of MELO3C034831 vs. ExPASy Swiss-Prot
Match: B8B8C5 (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26819 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.7e-12
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 22  EDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFV 59
           E+EHG+TLC AC E+Y +DEFWICCDI +KWFHGK V
Sbjct: 203 EEEHGETLCGACGESYGADEFWICCDICEKWFHGKCV 239

[Close]

BLAST of MELO3C034831 vs. ExPASy Swiss-Prot
Match: Q6YTY3 (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0608400 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.7e-12
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 22  EDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFV 59
           E+EHG+TLC AC E+Y +DEFWICCDI +KWFHGK V
Sbjct: 204 EEEHGETLCGACGESYGADEFWICCDICEKWFHGKCV 240

[Close]

BLAST of MELO3C034831 vs. NCBI nr
Match: TYK29017.1 (PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MQGMCARQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVV 60
          MQG CARQ QA EEVETYEE+EDEHGDTLCRAC ENYASDEFWICCDIY+ WFHGKFVV
Sbjct: 1  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV 59

[Close]

BLAST of MELO3C034831 vs. NCBI nr
Match: KAA0067842.1 (PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.0e-22
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MQGMCARQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVV 60
           MQG CARQ QAR+EVETYEE++DEH D LCRAC ENYASDEFWICCDIY+KWFHGKFVV
Sbjct: 75  MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 133

[Close]

BLAST of MELO3C034831 vs. NCBI nr
Match: XP_016903323.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 2.0e-22
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MQGMCARQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVV 60
          MQG CARQ QAR+EVETYEE++DEH D LCRAC ENYASDEFWICCDIY+KWFHGKFVV
Sbjct: 39 MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 97

[Close]

BLAST of MELO3C034831 vs. NCBI nr
Match: KAA0032497.1 (PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 6.5e-21
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 7   RQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVV 60
           RQ Q REEVETYEE+EDEHGDTLCRAC ENYASDEFWICCDIY+KWFHGKFVV
Sbjct: 163 RQSQTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 215

[Close]

BLAST of MELO3C034831 vs. NCBI nr
Match: TYJ98373.1 (PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.5e-20
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 7   RQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVV 60
           RQ   REEVETYEE+EDEHGDTLCRAC ENYASDEFWICCDIY+KWFHGKFVV
Sbjct: 175 RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 227

[Close]

BLAST of MELO3C034831 vs. ExPASy TrEMBL
Match: A0A5D3DYQ4 (PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001280 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.8e-24
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MQGMCARQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVV 60
          MQG CARQ QA EEVETYEE+EDEHGDTLCRAC ENYASDEFWICCDIY+ WFHGKFVV
Sbjct: 1  MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV 59

[Close]

BLAST of MELO3C034831 vs. ExPASy TrEMBL
Match: A0A5A7VHJ0 (PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00500 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.7e-23
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MQGMCARQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVV 60
           MQG CARQ QAR+EVETYEE++DEH D LCRAC ENYASDEFWICCDIY+KWFHGKFVV
Sbjct: 75  MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 133

[Close]

BLAST of MELO3C034831 vs. ExPASy TrEMBL
Match: A0A1S4E514 (PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC107992128 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.7e-23
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MQGMCARQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVV 60
          MQG CARQ QAR+EVETYEE++DEH D LCRAC ENYASDEFWICCDIY+KWFHGKFVV
Sbjct: 39 MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 97

[Close]

BLAST of MELO3C034831 vs. ExPASy TrEMBL
Match: A0A5A7ST15 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00040 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.1e-21
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 7   RQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVV 60
           RQ Q REEVETYEE+EDEHGDTLCRAC ENYASDEFWICCDIY+KWFHGKFVV
Sbjct: 163 RQSQTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 215

[Close]

BLAST of MELO3C034831 vs. ExPASy TrEMBL
Match: A0A5D3BGJ5 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001100 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 7   RQLQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFVV 60
           RQ   REEVETYEE+EDEHGDTLCRAC ENYASDEFWICCDIY+KWFHGKFVV
Sbjct: 175 RQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 227

[Close]

BLAST of MELO3C034831 vs. TAIR 10
Match: AT5G20510.1 (alfin-like 5 )

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-15
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 9   LQAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFV 59
           L+  E  E  +E+EDEHG+TLC AC +NYASDEFWICCD+ +KWFHG+ V
Sbjct: 186 LELEEGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]

BLAST of MELO3C034831 vs. TAIR 10
Match: AT5G05610.1 (alfin-like 1 )

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-14
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 16  ETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFV 59
           E+YE+ +DEHGDTLC +C  NY +DEFWICCD+ ++W+HGK V
Sbjct: 174 ESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C034831 vs. TAIR 10
Match: AT5G05610.2 (alfin-like 1 )

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-14
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 16  ETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFV 59
           E+YE+ +DEHGDTLC +C  NY +DEFWICCD+ ++W+HGK V
Sbjct: 174 ESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C034831 vs. TAIR 10
Match: AT3G42790.1 (alfin-like 3 )

HSP 1 Score: 70.1 bits (170), Expect = 6.9e-13
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 2   QGMCARQLQAREEVETY-EENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFV 59
           +G  ++  Q +EE E   E++ED+HG+TLC AC ++  +DEFWICCD+ +KWFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

[Close]

BLAST of MELO3C034831 vs. TAIR 10
Match: AT5G26210.1 (alfin-like 4 )

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-12
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 10  QAREEVETYEENEDEHGDTLCRACRENYASDEFWICCDIYDKWFHGKFV 59
           +  EE    EE+EDE G+T C AC E+YA+DEFWICCD+ + WFHGK V
Sbjct: 182 EEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

The following BLAST results are available for this feature:

BLAST of MELO3C034831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XEM9	6.1e-14	64.00	PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1	[more]
Q9FFF5	5.2e-13	62.79	PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1	[more]
Q9M2B4	9.7e-12	51.72	PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1	[more]
B8B8C5	9.7e-12	72.97	PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26...	[more]
Q6YTY3	9.7e-12	72.97	PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07...	[more]

BLAST of MELO3C034831 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29017.1	1.8e-23	88.14	PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa]	[more]
KAA0067842.1	2.0e-22	84.75	PHD finger protein ALFIN-LIKE 3-like [Cucumis melo var. makuwa]	[more]
XP_016903323.1	2.0e-22	84.75	PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo]	[more]
KAA0032497.1	6.5e-21	90.57	PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa]	[more]
TYJ98373.1	2.5e-20	88.68	PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYQ4	8.8e-24	88.14	PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VHJ0	9.7e-23	84.75	PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S4E514	9.7e-23	84.75	PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC107992128 PE=...	[more]
A0A5A7ST15	3.1e-21	90.57	PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BGJ5	1.2e-20	88.68	PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of MELO3C034831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20510.1	4.3e-15	64.00	alfin-like 5	[more]
AT5G05610.1	3.7e-14	62.79	alfin-like 1	[more]
AT5G05610.2	3.7e-14	62.79	alfin-like 1	[more]
AT3G42790.1	6.9e-13	51.72	alfin-like 3	[more]
AT5G26210.1	1.2e-12	59.18	alfin-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 19..59 e-value: 3.9E-13 score: 50.6
None	No IPR available	PANTHER	PTHR12321:SF141	PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1	coord: 5..58
IPR045104	Alfin	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 5..58
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 11..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034831.1	MELO3C034831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0042393	histone binding