MELO3C034794 (gene) Melon (DHL92) v4

Overview
NameMELO3C034794
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Locationchr11: 17950805 .. 17951060 (+)
RNA-Seq ExpressionMELO3C034794
SyntenyMELO3C034794
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTTACAGAAATGAAGCGGAAAATTCAGAGAAAGATGAAAAGGACAACGATGGAAGAGATAGAGATGTGGTTTATGCATCGTCTTTCATGCCATCGCAACCAAAAAAATGCTCTCATTCCGACAAGATGTAGATTTGCACCAAATCGTTCATCGTTTAACGATAACCGGTACCAAAGTTCATTGATTACAAGTGACAGAACTATCGAAGAAGAAAAGAAAATAGAGAGCGGTGGTGATTTGACCCAAAACCCTAA

mRNA sequence

TCGTTACAGAAATGAAGCGGAAAATTCAGAGAAAGATGAAAAGGACAACGATGGAAGAGATAGAGATGTGGTTTATGCATCGTCTTTCATGCCATCGCAACCAAAAAAATGCTCTCATTCCGACAAGATGTAGATTTGCACCAAATCGTTCATCGTTTAACGATAACCGGTACCAAAGTTCATTGATTACAAGTGACAGAACTATCGAAGAAGAAAAGAAAATAGAGAGCGGTGGTGATTTGACCCAAAACCCTAA

Coding sequence (CDS)

ATGAAGCGGAAAATTCAGAGAAAGATGAAAAGGACAACGATGGAAGAGATAGAGATGTGGTTTATGCATCGTCTTTCATGCCATCGCAACCAAAAAAATGCTCTCATTCCGACAAGATGTAGATTTGCACCAAATCGTTCATCGTTTAACGATAACCGGTACCAAAGTTCATTGATTACAAGTGACAGAACTATCGAAGAAGAAAAGAAAATAGAGAGCGGTGGTGATTTGACCCAAAACCCT

Protein sequence

MKRKIQRKMKRTTMEEIEMWFMHRLSCHRNQKNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIESGGDLTQNP
Homology
[Close]
BLAST of MELO3C034794 vs. NCBI nr
Match: KAA0061741.1 (uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 32 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 73
          KNALIPTRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

[Close]
BLAST of MELO3C034794 vs. NCBI nr
Match: KAA0035440.1 (uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 32 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 73
          KNALIPTRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

[Close]
BLAST of MELO3C034794 vs. NCBI nr
Match: KAA0039167.1 (uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0052049.1 uncharacterized protein E6C27_scaffold578G00120 [Cucumis melo var. makuwa] >KAA0061151.1 uncharacterized protein E6C27_scaffold753G00180 [Cucumis melo var. makuwa] >TYK05359.1 uncharacterized protein E5676_scaffold83G00280 [Cucumis melo var. makuwa] >TYK12370.1 uncharacterized protein E5676_scaffold302G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-10
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 32 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 73
          KNALIPTRCRF PN SSFN+NRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNENRYQSSSITSDRTIEEEEKIE 90

[Close]
BLAST of MELO3C034794 vs. NCBI nr
Match: KAA0054315.1 (uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12351.1 uncharacterized protein E5676_scaffold302G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-10
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 32 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 73
          KNALI TRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALISTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

[Close]
BLAST of MELO3C034794 vs. NCBI nr
Match: KAA0033202.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 30  NQKNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIESGGDLTQNP 82
           + KNALI TRC+ AP RSSFNDNRY +  ITSDRT EEE+KIES  D T NP
Sbjct: 136 SSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNP 187

[Close]
BLAST of MELO3C034794 vs. ExPASy TrEMBL
Match: A0A5A7V7N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001160 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 32 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 73
          KNALIPTRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

[Close]
BLAST of MELO3C034794 vs. ExPASy TrEMBL
Match: A0A5A7SWM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00630 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 32 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 73
          KNALIPTRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

[Close]
BLAST of MELO3C034794 vs. ExPASy TrEMBL
Match: A0A5D3DUF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001500 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 32 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 73
          KNALIPTRCRF PN SSFN+NRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNENRYQSSSITSDRTIEEEEKIE 90

[Close]
BLAST of MELO3C034794 vs. ExPASy TrEMBL
Match: A0A5A7UKV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001280 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-10
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 32 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 73
          KNALI TRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALISTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

[Close]
BLAST of MELO3C034794 vs. ExPASy TrEMBL
Match: A0A5A7SPT6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00190 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 30  NQKNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIESGGDLTQNP 82
           + KNALI TRC+ AP RSSFNDNRY +  ITSDRT EEE+KIES  D T NP
Sbjct: 136 SSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNP 187

The following BLAST results are available for this feature:
BLAST of MELO3C034794 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C034794 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061741.18.2e-1190.24uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa][more]
KAA0035440.18.2e-1190.24uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa][more]
KAA0039167.12.4e-1087.80uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0... [more]
KAA0054315.16.9e-1087.80uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12... [more]
KAA0033202.15.9e-0969.23gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis ... [more]
BLAST of MELO3C034794 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V7N34.0e-1190.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SWM44.0e-1190.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DUF51.2e-1087.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UKV83.4e-1087.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SPT62.8e-0969.23Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G001... [more]
BLAST of MELO3C034794 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034794.1MELO3C034794.1mRNA