MELO3C034771 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034771
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	phototropin-1
Location	chr11: 5582488 .. 5584030 (-)
RNA-Seq Expression	MELO3C034771
Synteny	MELO3C034771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTATAATTCAGGCATCCTTCTACATGAAATGCTTTATGGATACACACCCTTTAAGGGGAAGACAAGGCAAAAGACCTTTGCCAACATTCTCCATAAGGATCTTAAATTTCCGAGAAGTATATCGGTAAATACTTTTTAAAGTTATTTGAGCTCATTAAATCTCTTTTTACTCACTATTAAATATATCAATGTTTAGAAAGTCTTTTATTCCTTATGTATATACAAATCTAAGTTGTGAGGCCTTTCAAATGTTGTGTTTCAGGCTAGTCTCAATGCAAAGTAGTTAATTTTTAGGTTATTGCATAGAGACCCCAAAAATCGATTAGGTTCTCGAGAAGGAGCTGGTGAAATCAAACGACATCCTTTCTTCTGAGGCGTTAATTGGGCGCTCGTCCGTTGCAAGGTAAACTCAAAACTCAATCTCAAGATTGTATGTCAATTGGGCGCTCTTCTCCCCACTATCTTGCCGAGATTGTATGTCTCTCCCTCCTGAACTTGCAATGGACCAACTGCAGGTTTTCTTATCATAATCTGGCTACTTTTTGGATTTGTGGTAAGTGTCTTATTTATTAAGAAAATTAAATTACATTTTCTTAAGGGTATTAGACATATTCTTTGGTACATTTATTTCAGAAAATTAATCATTGGTTTGCACCAGGTCAATACATCTAATGTTATCATCTTGGAAGGTATTTTGTTTAATGTTTCTCAAATCATGTGGATGAAATGAGATATGTGAATACTGAAAGGAAGAGTTGAGTAGTGATTTCTCATTTCAGCTTTGCAAAAATAATGTTTTGATTCAATTTTATGTTCATGACTTCATTCTCAGTTAAGCTGCAGATATTGTCTTTCTCAAATGCGTTATTTCATAGGGGTTCAAGTTTATGTTCACAACTTCATGGAAGGAGAAAGAATGATAAGAATCTTCAACTACACAACCCAAAAGCATAAATCTGTAATGTTTTTTCTTCTCAACTTTTAGGTTTTTCATTTGCTTTAGCCTATGTTCTCTTAAAGAAGTTATTGATTTTGTTTAAAACAAAATCTTTTTTTTTTTTTTTTTAAAAGGCATCTAAGTACTATGACATCCCATGTGTTCTCTCTTATTCTTTTGATAGCTATGTGAGCAACCATCCACTAATTCTTAAAGTATGTTGTAAGCGTCCAATACTTCATAGAGATCCTACATTTTGTGTCTATTTCAAAGACATAATTCTAGTGTCAAAGGTCTTAGACTTAAAAGTTAGTGTTCTTAGTTTTAATGTTATTCTCATCTTGTTTGTAGATTTCAAGGAGTTGATGATAACAATCGTGAAACTTTGAGTTTGGAGTTATCTAAGAGTGTGGAGCTTGGAGGAGGGTGATGTCCTTGTTTCTTATTATTACATATACTTTGTGTTTTATGATTAAGAATGATGATCATAACTTGTTTTGTAATATGAATAAGAACAATGTTCCTAAGTTGTAAGTATGTAATGACCAACTATATGTATATTCAAGGATATATATGCAATTTATTAGTTCATTGATTGAAA

mRNA sequence

ATGGTTTATAATTCAGGCATCCTTCTACATGAAATGCTTTATGGATACACACCCTTTAAGGGGAAGACAAGGCAAAAGACCTTTGCCAACATTCTCCATAAGGATCTTAAATTTCCGAGAAGTATATCGGTTCTCGAGAAGGAGCTGGTGAAATCAAACGACATCCTTTCTTCTGAGGCGTTAATTGGGCGCTCGTCCGTTGCAAGAAAATTAATCATTGGTTTGCACCAGGTCAATACATCTAATGTTATCATCTTGGAAGGGGTTCAAGTTTATGTTCACAACTTCATGGAAGGAGAAAGAATGATAAGAATCTTCAACTACACAACCCAAAAGCATAAATCTGTAATATTTCAAGGAGTTGATGATAACAATCGTGAAACTTTGAGTTTGGAGTTATCTAAGAGTGTGGAGCTTGGAGGAGGGTGATGTCCTTGTTTCTTATTATTACATATACTTTGTGTTTTATGATTAAGAATGATGATCATAACTTGTTTTGTAATATGAATAAGAACAATGTTCCTAAGTTGTAAGTATGTAATGACCAACTATATGTATATTCAAGGATATATATGCAATTTATTAGTTCATTGATTGAAA

Coding sequence (CDS)

ATGGTTTATAATTCAGGCATCCTTCTACATGAAATGCTTTATGGATACACACCCTTTAAGGGGAAGACAAGGCAAAAGACCTTTGCCAACATTCTCCATAAGGATCTTAAATTTCCGAGAAGTATATCGGTTCTCGAGAAGGAGCTGGTGAAATCAAACGACATCCTTTCTTCTGAGGCGTTAATTGGGCGCTCGTCCGTTGCAAGAAAATTAATCATTGGTTTGCACCAGGTCAATACATCTAATGTTATCATCTTGGAAGGGGTTCAAGTTTATGTTCACAACTTCATGGAAGGAGAAAGAATGATAAGAATCTTCAACTACACAACCCAAAAGCATAAATCTGTAATATTTCAAGGAGTTGATGATAACAATCGTGAAACTTTGAGTTTGGAGTTATCTAAGAGTGTGGAGCTTGGAGGAGGGTGA

Protein sequence

MVYNSGILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISVLEKELVKSNDILSSEALIGRSSVARKLIIGLHQVNTSNVIILEGVQVYVHNFMEGERMIRIFNYTTQKHKSVIFQGVDDNNRETLSLELSKSVELGGG

Homology

[Close]

BLAST of MELO3C034771 vs. NCBI nr
Match: KAA0042868.1 (putative protein phosphatase 2C 33 [Cucumis melo var. makuwa] >TYK05271.1 putative protein phosphatase 2C 33 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 4.6e-17
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 86  LEGVQVYVHNFMEGERMIRIFNYTTQKHKSVIFQGVDDNNRETLSLELSKSVELGGG 143
           ++ VQVYVHNFMEGERM+RIFNY T+KHK VIFQGVDDNNRETLSLELS SV LGGG
Sbjct: 141 MKRVQVYVHNFMEGERMMRIFNYKTRKHKYVIFQGVDDNNRETLSLELSLSVVLGGG 197

[Close]

BLAST of MELO3C034771 vs. NCBI nr
Match: AML78780.1 (putative LOV domain-containing protein [Loropetalum chinense])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYGYTPF+GKTRQKTFANILHKDLKFPRSISV
Sbjct: 883 GILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISV 921

[Close]

BLAST of MELO3C034771 vs. NCBI nr
Match: AML79208.1 (putative LOV domain-containing protein [Synsepalum dulcificum])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYGYTPF+GKTRQKTFANILHKDLKFPRSISV
Sbjct: 898 GILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISV 936

[Close]

BLAST of MELO3C034771 vs. NCBI nr
Match: ANC96916.1 (phototropin, partial [Smilax bona-nox])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYGYTPF+GKTRQKTFANILHKDLKFPRSISV
Sbjct: 677 GILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISV 715

[Close]

BLAST of MELO3C034771 vs. NCBI nr
Match: AML79466.1 (putative LOV domain-containing protein [Hamamelis virginiana])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-11
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYGYTPF+GKTRQKTFAN+LHKDLKFPRSISV
Sbjct: 887 GILLYEMLYGYTPFRGKTRQKTFANVLHKDLKFPRSISV 925

[Close]

BLAST of MELO3C034771 vs. ExPASy Swiss-Prot
Match: Q2QYY8 (Phototropin-1A OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1A PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 7.2e-13
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYGYTPF+GKTRQ+TFANILHKD++FP SISV
Sbjct: 808 GILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASISV 846

[Close]

BLAST of MELO3C034771 vs. ExPASy Swiss-Prot
Match: Q2RBR1 (Phototropin-1B OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1B PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 7.2e-13
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYGYTPF+GKTRQ+TFANILHKD++FP SISV
Sbjct: 808 GILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASISV 846

[Close]

BLAST of MELO3C034771 vs. ExPASy Swiss-Prot
Match: O48963 (Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-11
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSI--SVLEKELV 51
           GIL++EMLYGYTPF+GKTRQKTF N+L KDLKFP SI  S+  K+L+
Sbjct: 879 GILMYEMLYGYTPFRGKTRQKTFTNVLQKDLKFPASIPASLQVKQLI 925

[Close]

BLAST of MELO3C034771 vs. ExPASy Swiss-Prot
Match: P93025 (Phototropin-2 OS=Arabidopsis thaliana OX=3702 GN=PHOT2 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 6.7e-11
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYG TPF+GK RQKTFANILHKDL FP SI V
Sbjct: 791 GILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPV 829

[Close]

BLAST of MELO3C034771 vs. ExPASy Swiss-Prot
Match: Q9ST27 (Phototropin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT2 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-10
Identity = 40/79 (50.63%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISVLEKELVKSNDILSSEALIGRS 65
           GILL+EMLYG TPF+GK R+KTF NILHKDL FP SI V                    S
Sbjct: 790 GILLYEMLYGRTPFRGKNRKKTFYNILHKDLTFPSSIPV--------------------S 848

Query: 66  SVARKLIIGLHQVNTSNVI 85
             A++LI GL Q + SN I
Sbjct: 850 LAAKQLIHGLLQRDPSNRI 848

[Close]

BLAST of MELO3C034771 vs. ExPASy TrEMBL
Match: A0A5D3C038 (PPM-type phosphatase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00880 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 86  LEGVQVYVHNFMEGERMIRIFNYTTQKHKSVIFQGVDDNNRETLSLELSKSVELGGG 143
           ++ VQVYVHNFMEGERM+RIFNY T+KHK VIFQGVDDNNRETLSLELS SV LGGG
Sbjct: 141 MKRVQVYVHNFMEGERMMRIFNYKTRKHKYVIFQGVDDNNRETLSLELSLSVVLGGG 197

[Close]

BLAST of MELO3C034771 vs. ExPASy TrEMBL
Match: A0A126X2Z6 (Putative LOV domain-containing protein OS=Loropetalum chinense OX=64118 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-12
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYGYTPF+GKTRQKTFANILHKDLKFPRSISV
Sbjct: 883 GILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISV 921

[Close]

BLAST of MELO3C034771 vs. ExPASy TrEMBL
Match: A0A160JN95 (Phototropin (Fragment) OS=Smilax bona-nox OX=50510 GN=PHOT1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-12
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYGYTPF+GKTRQKTFANILHKDLKFPRSISV
Sbjct: 677 GILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISV 715

[Close]

BLAST of MELO3C034771 vs. ExPASy TrEMBL
Match: A0A126X3E4 (Putative LOV domain-containing protein OS=Synsepalum dulcificum OX=3743 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-12
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYGYTPF+GKTRQKTFANILHKDLKFPRSISV
Sbjct: 898 GILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISV 936

[Close]

BLAST of MELO3C034771 vs. ExPASy TrEMBL
Match: A0A126X450 (Putative LOV domain-containing protein OS=Hamamelis virginiana OX=4397 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.2e-12
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYGYTPF+GKTRQKTFAN+LHKDLKFPRSISV
Sbjct: 887 GILLYEMLYGYTPFRGKTRQKTFANVLHKDLKFPRSISV 925

[Close]

BLAST of MELO3C034771 vs. TAIR 10
Match: AT3G45780.1 (phototropin 1 )

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSI--SVLEKELV 51
           GIL++EMLYGYTPF+GKTRQKTF N+L KDLKFP SI  S+  K+L+
Sbjct: 879 GILMYEMLYGYTPFRGKTRQKTFTNVLQKDLKFPASIPASLQVKQLI 925

[Close]

BLAST of MELO3C034771 vs. TAIR 10
Match: AT3G45780.2 (phototropin 1 )

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSI--SVLEKELV 51
           GIL++EMLYGYTPF+GKTRQKTF N+L KDLKFP SI  S+  K+L+
Sbjct: 879 GILMYEMLYGYTPFRGKTRQKTFTNVLQKDLKFPASIPASLQVKQLI 925

[Close]

BLAST of MELO3C034771 vs. TAIR 10
Match: AT5G58140.2 (phototropin 2 )

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYG TPF+GK RQKTFANILHKDL FP SI V
Sbjct: 791 GILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPV 829

[Close]

BLAST of MELO3C034771 vs. TAIR 10
Match: AT5G58140.3 (phototropin 2 )

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYG TPF+GK RQKTFANILHKDL FP SI V
Sbjct: 791 GILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPV 829

[Close]

BLAST of MELO3C034771 vs. TAIR 10
Match: AT5G58140.1 (phototropin 2 )

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   GILLHEMLYGYTPFKGKTRQKTFANILHKDLKFPRSISV 45
           GILL+EMLYG TPF+GK RQKTFANILHKDL FP SI V
Sbjct: 791 GILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPV 829

The following BLAST results are available for this feature:

BLAST of MELO3C034771 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042868.1	4.6e-17	84.21	putative protein phosphatase 2C 33 [Cucumis melo var. makuwa] >TYK05271.1 putati...	[more]
AML78780.1	1.3e-11	94.87	putative LOV domain-containing protein [Loropetalum chinense]	[more]
AML79208.1	1.3e-11	94.87	putative LOV domain-containing protein [Synsepalum dulcificum]	[more]
ANC96916.1	1.3e-11	94.87	phototropin, partial [Smilax bona-nox]	[more]
AML79466.1	1.7e-11	92.31	putative LOV domain-containing protein [Hamamelis virginiana]	[more]

BLAST of MELO3C034771 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QYY8	7.2e-13	84.62	Phototropin-1A OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1A PE=1 SV=2	[more]
Q2RBR1	7.2e-13	84.62	Phototropin-1B OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1B PE=1 SV=2	[more]
O48963	3.0e-11	70.21	Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1	[more]
P93025	6.7e-11	82.05	Phototropin-2 OS=Arabidopsis thaliana OX=3702 GN=PHOT2 PE=1 SV=2	[more]
Q9ST27	7.4e-10	50.63	Phototropin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT2 PE=1 SV=1	[more]

BLAST of MELO3C034771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C038	2.2e-17	84.21	PPM-type phosphatase domain-containing protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A126X2Z6	6.3e-12	94.87	Putative LOV domain-containing protein OS=Loropetalum chinense OX=64118 PE=2 SV=...	[more]
A0A160JN95	6.3e-12	94.87	Phototropin (Fragment) OS=Smilax bona-nox OX=50510 GN=PHOT1 PE=2 SV=1	[more]
A0A126X3E4	6.3e-12	94.87	Putative LOV domain-containing protein OS=Synsepalum dulcificum OX=3743 PE=2 SV=...	[more]
A0A126X450	8.2e-12	92.31	Putative LOV domain-containing protein OS=Hamamelis virginiana OX=4397 PE=2 SV=1	[more]

BLAST of MELO3C034771 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45780.1	2.1e-12	70.21	phototropin 1	[more]
AT3G45780.2	2.1e-12	70.21	phototropin 1	[more]
AT5G58140.2	4.8e-12	82.05	phototropin 2	[more]
AT5G58140.3	4.8e-12	82.05	phototropin 2	[more]
AT5G58140.1	4.8e-12	82.05	phototropin 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.510.10	Transferase(Phosphotransferase) domain 1	coord: 3..51 e-value: 2.7E-9 score: 38.4
None	No IPR available	PANTHER	PTHR45637:SF20	PHOTOTROPIN-1	coord: 5..44
None	No IPR available	PANTHER	PTHR45637	FLIPPASE KINASE 1-RELATED	coord: 5..44
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 2..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034771.1	MELO3C034771.1	mRNA