MELO3C034627 (gene) Melon (DHL92) v4

Overview
NameMELO3C034627
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Locationchr03: 13688821 .. 13688965 (-)
RNA-Seq ExpressionMELO3C034627
SyntenyMELO3C034627
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGATTGAGAGAGACGACGTCGGCGGCCGAAAATCAGATGTAAGCGGTGGATGGTGGAGGGAGAAAACGGCGACGATGGTGGAAGGAGAAAACGGTTGAGGTCGATCGGTTGGTGGAGGGAGAAAATGGCAACGATGGTGGATGG

mRNA sequence

TGGATTGAGAGAGACGACGTCGGCGGCCGAAAATCAGATGTAAGCGGTGGATGGTGGAGGGAGAAAACGGCGACGATGGTGGAAGGAGAAAACGGTTGAGGTCGATCGGTTGGTGGAGGGAGAAAATGGCAACGATGGTGGATGG

Coding sequence (CDS)

ATGGTGGAGGGAGAAAACGGCGACGATGGTGGAAGGAGAAAACGGTTGAGGTCGATCGGTTGGTGGAGGGAGAAAATGGCAACGATGGTGGAT

Protein sequence

MVEGENGDDGGRRKRLRSIGWWREKMATMVD
Homology
BLAST of MELO3C034627 vs. NCBI nr
Match: ADN34082.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0063908.1 hypothetical protein E6C27_scaffold616G00340 [Cucumis melo var. makuwa] >TYK22492.1 hypothetical protein E5676_scaffold19523G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-09
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0

Query: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 32
          MVEGENGDDGGRRKRLRSIGWWREKMATMVD
Sbjct: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 31

BLAST of MELO3C034627 vs. NCBI nr
Match: KAA0065564.1 (hypothetical protein E6C27_scaffold90G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 32
          +VEGEN DDGGRRKRLRSIGWWREKM  MVD
Sbjct: 66 VVEGENDDDGGRRKRLRSIGWWREKMTMMVD 96

BLAST of MELO3C034627 vs. NCBI nr
Match: TYJ97581.1 (hypothetical protein E5676_scaffold17962G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 32
          +VEGENGDDGGRRK L+SIGWWREK ATMVD
Sbjct: 7  VVEGENGDDGGRRKWLKSIGWWREKTATMVD 37

BLAST of MELO3C034627 vs. NCBI nr
Match: KAA0063959.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK05180.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 1   MVEGENGDDGGRRKRLRSIGWWREKMATMVD 32
           +VEGENGDDGGRRK L+SIGWWREK ATMVD
Sbjct: 396 VVEGENGDDGGRRKWLKSIGWWREKTATMVD 426

BLAST of MELO3C034627 vs. NCBI nr
Match: KAA0066345.1 (hypothetical protein E6C27_scaffold21G004100 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 8.8e-06
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 32
          +VE ENG+DGGRRKRLRSIGWWREK  TM+D
Sbjct: 66 LVEEENGNDGGRRKRLRSIGWWREKTTTMMD 96

BLAST of MELO3C034627 vs. ExPASy TrEMBL
Match: A0A5D3DFW9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19523G00290 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0

Query: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 32
          MVEGENGDDGGRRKRLRSIGWWREKMATMVD
Sbjct: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 31

BLAST of MELO3C034627 vs. ExPASy TrEMBL
Match: E5GC83 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0

Query: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 32
          MVEGENGDDGGRRKRLRSIGWWREKMATMVD
Sbjct: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 31

BLAST of MELO3C034627 vs. ExPASy TrEMBL
Match: A0A5D3C1D1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00490 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-07
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 1   MVEGENGDDGGRRKRLRSIGWWREKMATMVD 32
           +VEGENGDDGGRRK L+SIGWWREK ATMVD
Sbjct: 396 VVEGENGDDGGRRKWLKSIGWWREKTATMVD 426

BLAST of MELO3C034627 vs. ExPASy TrEMBL
Match: A0A5D3BG16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17962G00010 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-07
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 32
          +VEGENGDDGGRRK L+SIGWWREK ATMVD
Sbjct: 7  VVEGENGDDGGRRKWLKSIGWWREKTATMVD 37

BLAST of MELO3C034627 vs. ExPASy TrEMBL
Match: A0A5A7VE58 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00010 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-07
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 1  MVEGENGDDGGRRKRLRSIGWWREKMATMVD 32
          +VEGEN DDGGRRKRLRSIGWWREKM  MVD
Sbjct: 66 VVEGENDDDGGRRKRLRSIGWWREKMTMMVD 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN34082.13.8e-09100.00hypothetical protein [Cucumis melo subsp. melo] >KAA0063908.1 hypothetical prote... [more]
KAA0065564.11.0e-0687.10hypothetical protein E6C27_scaffold90G00010 [Cucumis melo var. makuwa][more]
TYJ97581.11.0e-0687.10hypothetical protein E5676_scaffold17962G00010 [Cucumis melo var. makuwa][more]
KAA0063959.11.0e-0687.10gag/pol protein [Cucumis melo var. makuwa] >TYK05180.1 gag/pol protein [Cucumis ... [more]
KAA0066345.18.8e-0680.65hypothetical protein E6C27_scaffold21G004100 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DFW91.9e-09100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GC831.9e-09100.00Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3C1D15.0e-0787.10Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G004... [more]
A0A5D3BG165.0e-0787.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VE585.0e-0787.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034627.1MELO3C034627.1mRNA