MELO3C034610 (gene) Melon (DHL92) v4

Overview
NameMELO3C034610
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 2-like
Locationchr11: 4894227 .. 4894544 (+)
RNA-Seq ExpressionMELO3C034610
SyntenyMELO3C034610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCGAAGCACCGAAGGTGAAGCAGTCGCACGACCTCATCCCCCTTCGTGAATCGCGGCCGCGTATCCCAACTTCGCAGTTCGCACGATCCCTTCCTCGTTCATCCCAACTTCGCAGTTCACACGATCCTTTCGACGTTCAGTTCTGGCGGCCTTCACAGCTTCACTTCCGGCAGTTCTTCGTTTTCATCTCGCAACTTTTGGCAGGTCTTCGTTCTAATCTCACAACTTCCGACAGCGTTCAGATCGCAGCTTTAATTTCTTTTCATCTCCCGCATTCCGATCGGCGTCTCTCCAAGGGTTCTTCATTTTGTCCAAG

mRNA sequence

AAGCGAAGCACCGAAGGTGAAGCAGTCGCACGACCTCATCCCCCTTCGTGAATCGCGGCCGCGTATCCCAACTTCGCAGTTCGCACGATCCCTTCCTCGTTCATCCCAACTTCGCAGTTCACACGATCCTTTCGACGTTCAGTTCTGGCGGCCTTCACAGCTTCACTTCCGGCAGTTCTTCGTTTTCATCTCGCAACTTTTGGCAGGTCTTCGTTCTAATCTCACAACTTCCGACAGCGTTCAGATCGCAGCTTTAATTTCTTTTCATCTCCCGCATTCCGATCGGCGTCTCTCCAAGGGTTCTTCATTTTGTCCAAG

Coding sequence (CDS)

AGCGAAGCACCGAAGGTGAAGCAGTCGCACGACCTCATCCCCCTTCGTGAATCGCGGCCGCGTATCCCAACTTCGCAGTTCGCACGATCCCTTCCTCGTTCATCCCAACTTCGCAGTTCACACGATCCTTTCGACGTTCAGTTCTGGCGGCCTTCACAGCTTCACTTCCGGCAGTTCTTCGTTTTCATCTCGCAACTTTTGGCAGGTCTTCGTTCTAATCTCACAACTTCCGACAGCGTTCAGATCGCAGCTTTAATTTCTTTTCATCTCCCGCATTCCGATCGGCGTCTCTCCAAGGGTTCTTCATTTTGTCCA

Protein sequence

SEAPKVKQSHDLIPLRESRPRIPTSQFARSLPRSSQLRSSHDPFDVQFWRPSQLHFRQFFVFISQLLAGLRSNLTTSDSVQIAALISFHLPHSDRRLSKGSSFCP
Homology
[Close]
BLAST of MELO3C034610 vs. NCBI nr
Match: KAA0032960.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 45/80 (56.25%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 27  FARSLPRSSQLRSSHDPFDVQFWRPSQLH-FRQFFVFISQLLAGLRSNLTTSDSVQIAAL 86
           FARSL RS+        FD        LH FR+FFVFISQL   L  +L T D VQIA  
Sbjct: 7   FARSLRRSN--------FD-------DLHNFRRFFVFISQLPTILHFHLATFDGVQIATS 66

Query: 87  ISFHLPHSDRRLSKGSSFCP 106
            SFHLPHS +RLS+GSSFCP
Sbjct: 67  FSFHLPHSGQRLSEGSSFCP 71

[Close]
BLAST of MELO3C034610 vs. ExPASy TrEMBL
Match: A0A5A7SPX5 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00380 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.3e-09
Identity = 45/80 (56.25%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 27  FARSLPRSSQLRSSHDPFDVQFWRPSQLH-FRQFFVFISQLLAGLRSNLTTSDSVQIAAL 86
           FARSL RS+        FD        LH FR+FFVFISQL   L  +L T D VQIA  
Sbjct: 7   FARSLRRSN--------FD-------DLHNFRRFFVFISQLPTILHFHLATFDGVQIATS 66

Query: 87  ISFHLPHSDRRLSKGSSFCP 106
            SFHLPHS +RLS+GSSFCP
Sbjct: 67  FSFHLPHSGQRLSEGSSFCP 71

The following BLAST results are available for this feature:
BLAST of MELO3C034610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032960.11.3e-0856.25zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ... [more]
BLAST of MELO3C034610 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SPX56.3e-0956.25Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var... [more]
BLAST of MELO3C034610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034610.1MELO3C034610.1mRNA