MELO3C034604.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C034604.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	ATP-binding/protein serine/threonine kinase
Location	chr11: 4186685 .. 4187162 (+)
RNA-Seq Expression	MELO3C034604.jh1
Synteny	MELO3C034604.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAACCATATAATACTAACCCAACTTAGACATTTGAATATGGTGAAGTCCTCAACTAAGTTCGCTCTCTTGTTCTTAATGTTCTTTATTATCTCAGGTATATATATAAATCCATTTCAATTGTTTATAGATAATTTTTTTTCTTCATCGCGATTGTTATCCTATCATGTGATAATTAACAATTAAAATATTTCAGAAACATTCGTGGCAGATGCCAGAAATGTCGTAAACATTCCATGCAATAGTCGTATTGATTGTTCTGATCCATGGGACTGTGATTGCAAGCTCAACCTATGTTTTTGCCACCCACATGAATTGGAAAAGAAATTGCTTCACAAAGACTTTCCCGAATATTTGGGAGAAGAAAAGACAACACCGCTCCTTAAAAACTGAATGGGAAATATTAACATATATTCTCCACTTCCAAATTAGATCTACCTACATAGCTCATATATAAATTGATAGAAATGTATTTTTAC

mRNA sequence

CTAACCATATAATACTAACCCAACTTAGACATTTGAATATGGTGAAGTCCTCAACTAAGTTCGCTCTCTTGTTCTTAATGTTCTTTATTATCTCAGAAACATTCGTGGCAGATGCCAGAAATGTCGTAAACATTCCATGCAATAGTCGTATTGATTGTTCTGATCCATGGGACTGTGATTGCAAGCTCAACCTATGTTTTTGCCACCCACATGAATTGGAAAAGAAATTGCTTCACAAAGACTTTCCCGAATATTTGGGAGAAGAAAAGACAACACCGCTCCTTAAAAACTGAATGGGAAATATTAACATATATTCTCCACTTCCAAATTAGATCTACCTACATAGCTCATATATAAATTGATAGAAATGTATTTTTAC

Coding sequence (CDS)

ATGGTGAAGTCCTCAACTAAGTTCGCTCTCTTGTTCTTAATGTTCTTTATTATCTCAGAAACATTCGTGGCAGATGCCAGAAATGTCGTAAACATTCCATGCAATAGTCGTATTGATTGTTCTGATCCATGGGACTGTGATTGCAAGCTCAACCTATGTTTTTGCCACCCACATGAATTGGAAAAGAAATTGCTTCACAAAGACTTTCCCGAATATTTGGGAGAAGAAAAGACAACACCGCTCCTTAAAAACTGA

Protein sequence

MVKSSTKFALLFLMFFIISETFVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHELEKKLLHKDFPEYLGEEKTTPLLKN

Homology

[Close]

BLAST of MELO3C034604.jh1 vs. NCBI nr
Match: KAE8651915.1 (hypothetical protein Csa_006059 [Cucumis sativus])

HSP 1 Score: 150 bits (378), Expect = 3.10e-45
Identity = 72/83 (86.75%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1  MVKSSTKFALLFLMFFIISETFVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHEL 60
          MVKSSTK ALL LMFFIISE FVA+ARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPH L
Sbjct: 1  MVKSSTKLALLLLMFFIISEMFVANARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHGL 60

Query: 61 EKKLLHKDFPEYLGEEKTTPLLK 83
          EKK LH  FPE+L EEKTT LLK
Sbjct: 61 EKKFLHNAFPEHLREEKTTSLLK 83

[Close]

BLAST of MELO3C034604.jh1 vs. NCBI nr
Match: KGN61957.1 (hypothetical protein Csa_006779 [Cucumis sativus])

HSP 1 Score: 129 bits (325), Expect = 3.67e-37
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MVKSSTKFALLFLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHE 60
          MVK  TKFAL FLM FIISE  FV+DARNVVNIPC SRIDCSDPWDCDCKLNLCFCHPH 
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 LEKKLLHKDFPEYLGEEK 77
          LEKK LHK FPE L E++
Sbjct: 61 LEKKFLHKAFPESLREDR 78

[Close]

BLAST of MELO3C034604.jh1 vs. NCBI nr
Match: OMO57769.1 (ATP-binding/protein serine/threonine kinase [Corchorus olitorius])

HSP 1 Score: 55.1 bits (131), Expect = 1.00e-07
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 25 DARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHP 57
          +ARN+ NIPCN+  DC DP  C+C++NLCFCHP
Sbjct: 27 EARNI-NIPCNTIKDCPDPVKCECRINLCFCHP 58

[Close]

BLAST of MELO3C034604.jh1 vs. NCBI nr
Match: EOY32073.1 (Uncharacterized protein TCM_039538 [Theobroma cacao])

HSP 1 Score: 53.9 bits (128), Expect = 2.71e-07
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 25 DARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHP 57
          +ARN+ N PCN+  DC+DP  C+C++NLCFCHP
Sbjct: 26 EARNI-NTPCNTVKDCADPIKCECRMNLCFCHP 57

[Close]

BLAST of MELO3C034604.jh1 vs. NCBI nr
Match: EOY32074.1 (Uncharacterized protein TCM_039540 [Theobroma cacao])

HSP 1 Score: 53.9 bits (128), Expect = 2.71e-07
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 25 DARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHP 57
          +ARN+ N PCN+  DC+DP  C+C++NLCFCHP
Sbjct: 26 EARNI-NTPCNTVKDCADPIKCECRINLCFCHP 57

[Close]

BLAST of MELO3C034604.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LJR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 3.15e-47
Identity = 74/83 (89.16%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MVKSSTKFALLFLMFFIISETFVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHEL 60
          MVKSSTK ALL LMFFIISETFVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPH L
Sbjct: 1  MVKSSTKLALLLLMFFIISETFVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHGL 60

Query: 61 EKKLLHKDFPEYLGEEKTTPLLK 83
          EKK LH  FPE+L EEKTT LLK
Sbjct: 61 EKKFLHNAFPEHLREEKTTSLLK 83

[Close]

BLAST of MELO3C034604.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LMG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 1.78e-37
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MVKSSTKFALLFLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHE 60
          MVK  TKFAL FLM FIISE  FV+DARNVVNIPC SRIDCSDPWDCDCKLNLCFCHPH 
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 LEKKLLHKDFPEYLGEEK 77
          LEKK LHK FPE L E++
Sbjct: 61 LEKKFLHKAFPESLREDR 78

[Close]

BLAST of MELO3C034604.jh1 vs. ExPASy TrEMBL
Match: A0A1R3GI95 (ATP-binding/protein serine/threonine kinase OS=Corchorus olitorius OX=93759 GN=COLO4_35133 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.84e-08
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 25 DARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHP 57
          +ARN+ NIPCN+  DC DP  C+C++NLCFCHP
Sbjct: 27 EARNI-NIPCNTIKDCPDPVKCECRINLCFCHP 58

[Close]

BLAST of MELO3C034604.jh1 vs. ExPASy TrEMBL
Match: A0A061GY75 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.31e-07
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 25 DARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHP 57
          +ARN+ N PCN+  DC+DP  C+C++NLCFCHP
Sbjct: 26 EARNI-NTPCNTVKDCADPIKCECRINLCFCHP 57

[Close]

BLAST of MELO3C034604.jh1 vs. ExPASy TrEMBL
Match: A0A061GRN9 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039538 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.31e-07
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 25 DARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHP 57
          +ARN+ N PCN+  DC+DP  C+C++NLCFCHP
Sbjct: 26 EARNI-NTPCNTVKDCADPIKCECRMNLCFCHP 57

The following BLAST results are available for this feature:

BLAST of MELO3C034604.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651915.1	3.10e-45	86.75	hypothetical protein Csa_006059 [Cucumis sativus]	[more]
KGN61957.1	3.67e-37	80.77	hypothetical protein Csa_006779 [Cucumis sativus]	[more]
OMO57769.1	1.00e-07	63.64	ATP-binding/protein serine/threonine kinase [Corchorus olitorius]	[more]
EOY32073.1	2.71e-07	60.61	Uncharacterized protein TCM_039538 [Theobroma cacao]	[more]
EOY32074.1	2.71e-07	60.61	Uncharacterized protein TCM_039540 [Theobroma cacao]	[more]

BLAST of MELO3C034604.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034604.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJR0	3.15e-47	89.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1	[more]
A0A0A0LMG3	1.78e-37	80.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1	[more]
A0A1R3GI95	4.84e-08	63.64	ATP-binding/protein serine/threonine kinase OS=Corchorus olitorius OX=93759 GN=C...	[more]
A0A061GY75	1.31e-07	60.61	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1	[more]
A0A061GRN9	1.31e-07	60.61	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039538 PE=4 SV=1	[more]

BLAST of MELO3C034604.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034604.jh1.t1	MELO3C034604.jh1.t1	mRNA