MELO3C034594.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034594.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein FAR-RED ELONGATED HYPOCOTYL 3-like
Locationchr11: 4636187 .. 4638274 (+)
RNA-Seq ExpressionMELO3C034594.jh1
SyntenyMELO3C034594.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATATTATTCAATAATATATTTCTTAATTATATCCATTATTCAAAAATTTCCTCAGCCATCTTCTCCTTTCTTCTTCCAATTTGTTGCTTACCAAACGCCATCTTCTGCTCACGTTTTCTTCTTTCTTCTTCCAATTTGTCGAAAATTCTTCACTCCCGAAAGTCCTCCACAAATTTAATATATTTTTTCCATCGTCGGATATTTCATACACCGCTAGATCTTTCATCTATCACTGGAAATCCTCTACTGCTGGTATCTTTATATCCTATCACTGTTCACAATCTTTTCAGAGCTTCACCGACGTTCAGGTATTAGAGCAATTCCCTGAGATGTATTTTAGATTTATAAGTTCTGATGCGTTTCTGTAGTTATTTATCGTAAATGTGCATTGAAATATATACCCGTTCATATTAACAAAGTACATACATTCGTCCGGATTGACAACTTCGAAATATATTTAATTTGATATATACCCTTTATTATTTTCAATAATACATATATTTTGTCATATAGTAATACTTTCATATGTTTTTAATATATTTTACAGGATGGCCAGAATTGCAGTATACTTCGATGGGTTTTTCAATAAATCACACAATTACGTTAGTTTTAGTGTGTTCGAGATTACAGTTAATGAACATATGTGCTATAAAGATTTGTACAGTAGCCTTAGATCCATGTTAGGTAATATTATTGATATGAACAATATTGATATATACCTTTGCCTAGGTCTTATAGAATGTGTTAAGAAGGATTTGACTATAACAAATGATAATGATGTTAAATGGATTTACCATATAATAACATCGAATGTTGAGCGTCATATTGTCCTTATTGTTCATTCTGTTGGTCCTTTATCTATTTGTTTGGGTTCATCGTCGTCGAGTTCTTTTCAAACTCAAATTCATGATGATGGGGGTAAATTTTTTGAAAACATAGATATGTCTAAGGTAGATTCCAATTTTTCACTGAAAGTCCAAGACATGTTTTCAACTAAATCTTTGATCAAAAAGTGTGTACAAGTCATTGCTCTCAGAGATAATTTTCAGTACGTTACTGTGAAATCGAACAAGGAAGTTATGATTTTGCAATGTGCCATTGAAAACTGCAAATGATCCTTGTGTGCTTCTTGTTCTATTCATAGGGATAGGTCAATATGGGTTCTTACTAGGTTTGATTTAGAATATACATGTTCAGTAGATGTTCCATTAATAGATCATAGACAAGCCACATTTACTGTTATCAAGAACTTAATTAAGAACAAAATTTATTTAGTTGGTTATGAATTGTCAACTCCCAAAGATATAGTTCATTTCATTCGTGCTGAACATGATTTAAGTATATCTTACCAAAAAGCATGGTGTGTTCGTGAGGCTGCGTTGGATGATATTCGCGGATCTCCTGAGGACTCCTACAAGATGTTACCCAAATTTGCATACATATTGGAACTCAACAATCCACGTATATTAACAATATACTTGAGTATATTGTTATACATTTTTTCTTATATGTTCTTATTTTTTTTTATGTTTATAGGTTCTGTTATTGAATACAAAGTTGATGTCGATGGTAGATTTCTTTACTTCTTCATGGAATTATCTGCTTCCATTTCTGGTTGGCAACATTGTCGTCCAATCATTTTTATTGATGGAACTAGTCCGAAGAATAAGTACGGTGGTACTTTGTTATCTGCTTCAACACCTGATTCCAATGATTAGATCTTTCCACTAGCTTTTTGTGTTGTGGATTCTGAGAACTATTCATCATGGACTTGGTTTTTCAACCAGTTAAAGAGAATTATATGTGGGCAGAATGATGTTGTCATAGTATCTGATAGGCATAGAAGAATATGCAAAGCTATAGAGGTAGTATTTCCCAACGTTTTACATTGCATCTGCCTTGTTCATTTACTTCAGAACCTCAAGTTGAAGTATAAGAGAATAGTGGATACCATATTTCATTCATGTAGGAAAGCATTTAATATTGTAGACTTCGAACATGAAATGCGTTTGTTGGAATCTTTTGCCCCTGGTATAGGTGAGAGCTTGAATCCATTGATTTTGCTAAGTGGTCTCGTGCCTA

mRNA sequence

ATGGTAATATTATTCAATAATATATTTCTTAATTATATCCATTATTCAAAAATTTCCTCAGCCATCTTCTCCTTTCTTCTTCCAATTTGTTGCTTACCAAACGCCATCTTCTGCTCACGTTTTCTTCTTTCTTCTTCCAATTTGTCGAAAATTCTTCACTCCCGAAAGTCCTCCACAAATTTAATATATTTTTTCCATCGTCGGATATTTCATACACCGCTAGATCTTTCATCTATCACTGGAAATCCTCTACTGCTGGTATCTTTATATCCTATCACTGTTCACAATCTTTTCAGAGCTTCACCGACGTTCAGGATGGCCAGAATTGCAGTATACTTCGATGGGTTTTTCAATAAATCACACAATTACGTTAGTTTTAGTGTGTTCGAGATTACAGTTAATGAACATATGTGCTATAAAGATTTGTACAGTAGCCTTAGATCCATGTTAGGTAATATTATTGATATGAACAATATTGATATATACCTTTGCCTAGGTCTTATAGAATGTGTTAAGAAGGATTTGACTATAACAAATGATAATGATGTTAAATGGATTTACCATATAATAACATCGAATGTTGAGCGTCATATTGTCCTTATTGTTCATTCTGTTGGTCCTTTATCTATTTGTTTGGGTTCATCGTCGTCGAGTTCTTTTCAAACTCAAATTCATGATGATGGGGGTAAATTTTTTGAAAACATAGATATGTCTAAGGTAGATTCCAATTTTTCACTGAAAGTCCAAGACATGTTTTCAACTAAATCTTTGATCAAAAAGTGTGTACAAGTCATTGCTCTCAGAGATAATTTTCAGTACGTTACTGTGAAATCGAACAAGGAAGTTATGATTTTGCAATGTGCCATTGAAAACTGCAAATGATCCTTGTGTGCTTCTTGTTCTATTCATAGGGATAGGTCAATATGGGTTCTTACTAGGTTTGATTTAGAATATACATGTTCAGTAGATGTTCCATTAATAGATCATAGACAAGCCACATTTACTGTTATCAAGAACTTAATTAAGAACAAAATTTATTTAGTTGGTTATGAATTGTCAACTCCCAAAGATATAGTTCATTTCATTCGTGCTGAACATGATTTAAGTTCTGTTATTGAATACAAAGTTGATGTCGATGGTAGATTTCTTTACTTCTTCATGGAATTATCTGCTTCCATTTCTGGTTGGCAACATTGTCGTCCAATCATTTTTATTGATGGAACTAGTCCGAAGAATAAGTACGGTGGTACTTTGTTATCTGCTTCAACACCTGATTCCAATGATTAGATCTTTCCACTAGCTTTTTGTGTTGTGGATTCTGAGAACTATTCATCATGGACTTGGTTTTTCAACCAGTTAAAGAGAATTATATGTGGGCAGAATGATGTTGTCATAGTATCTGATAGGCATAGAAGAATATGCAAAGCTATAGAGGTAGTATTTCCCAACGTTTTACATTGCATCTGCCTTGTTCATTTACTTCAGAACCTCAAGTTGAAGTATAAGAGAATAGTGGATACCATATTTCATTCATGTAGGAAAGCATTTAATATTGTAGACTTCGAACATGAAATGCGTTTGTTGGAATCTTTTGCCCCTGGTATAGGTGAGAGCTTGAATCCATTGATTTTGCTAAGTGGTCTCGTGCCTA

Coding sequence (CDS)

ATGGTAATATTATTCAATAATATATTTCTTAATTATATCCATTATTCAAAAATTTCCTCAGCCATCTTCTCCTTTCTTCTTCCAATTTGTTGCTTACCAAACGCCATCTTCTGCTCACGTTTTCTTCTTTCTTCTTCCAATTTGTCGAAAATTCTTCACTCCCGAAAGTCCTCCACAAATTTAATATATTTTTTCCATCGTCGGATATTTCATACACCGCTAGATCTTTCATCTATCACTGGAAATCCTCTACTGCTGGTATCTTTATATCCTATCACTGTTCACAATCTTTTCAGAGCTTCACCGACGTTCAGGATGGCCAGAATTGCAGTATACTTCGATGGGTTTTTCAATAAATCACACAATTACGTTAGTTTTAGTGTGTTCGAGATTACAGTTAATGAACATATGTGCTATAAAGATTTGTACAGTAGCCTTAGATCCATGTTAGGTAATATTATTGATATGAACAATATTGATATATACCTTTGCCTAGGTCTTATAGAATGTGTTAAGAAGGATTTGACTATAACAAATGATAATGATGTTAAATGGATTTACCATATAATAACATCGAATGTTGAGCGTCATATTGTCCTTATTGTTCATTCTGTTGGTCCTTTATCTATTTGTTTGGGTTCATCGTCGTCGAGTTCTTTTCAAACTCAAATTCATGATGATGGGGGTAAATTTTTTGAAAACATAGATATGTCTAAGGTAGATTCCAATTTTTCACTGAAAGTCCAAGACATGTTTTCAACTAAATCTTTGATCAAAAAGTGTGTACAAGTCATTGCTCTCAGAGATAATTTTCAGTACGTTACTGTGAAATCGAACAAGGAAGTTATGATTTTGCAATGTGCCATTGAAAACTGCAAATGA

Protein sequence

MVILFNNIFLNYIHYSKISSAIFSFLLPICCLPNAIFCSRFLLSSSNLSKILHSRKSSTNLIYFFHRRIFHTPLDLSSITGNPLLLVSLYPITVHNLFRASPTFRMARIAVYFDGFFNKSHNYVSFSVFEITVNEHMCYKDLYSSLRSMLGNIIDMNNIDIYLCLGLIECVKKDLTITNDNDVKWIYHIITSNVERHIVLIVHSVGPLSICLGSSSSSSFQTQIHDDGGKFFENIDMSKVDSNFSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK
Homology
[Close]
BLAST of MELO3C034594.jh1 vs. NCBI nr
Match: XP_008452162.1 (PREDICTED: uncharacterized protein LOC103493267 [Cucumis melo])

HSP 1 Score: 209 bits (532), Expect = 2.50e-60
Identity = 104/116 (89.66%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 178 TNDNDVKWIYHIITSNVERHIVLIVHSVGPLSICLGSSSSSSFQTQIHDDGGKFFENIDM 237
           TNDNDVKW+YHIITSNVERHI LIVH VG LSICLGSSSSSSFQTQIHDD G+FFEN+DM
Sbjct: 2   TNDNDVKWVYHIITSNVERHIALIVHYVGLLSICLGSSSSSSFQTQIHDDRGRFFENMDM 61

Query: 238 SKVDSNFSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK 293
           SKVDSNF+LKVQDMFSTKSL KKCVQVIALRDNFQYVT+KSN EVMILQC IENCK
Sbjct: 62  SKVDSNFALKVQDMFSTKSLFKKCVQVIALRDNFQYVTMKSNNEVMILQCVIENCK 117

[Close]
BLAST of MELO3C034594.jh1 vs. NCBI nr
Match: TYK22525.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (396), Expect = 2.61e-41
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 142 LYSSLRSMLGNIIDMNNIDIYLCLGLIECVKKDLTITNDNDVKWIYHIITSNVERHIVLI 201
           +Y SLRSML +IIDMNNIDIYLCLG IEC KKDL I NDNDVKW+YHIITSNVERHI LI
Sbjct: 1   MYRSLRSMLTSIIDMNNIDIYLCLGPIECGKKDLAIRNDNDVKWVYHIITSNVERHIALI 60

Query: 202 VHSVGPLSICLGSSSSSSFQTQIHDDG 228
           VHSVGPLSICLGSSSSSSFQTQIHDDG
Sbjct: 61  VHSVGPLSICLGSSSSSSFQTQIHDDG 87

[Close]
BLAST of MELO3C034594.jh1 vs. NCBI nr
Match: KAA0062727.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (396), Expect = 2.26e-39
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 142 LYSSLRSMLGNIIDMNNIDIYLCLGLIECVKKDLTITNDNDVKWIYHIITSNVERHIVLI 201
           +Y SLRSML +IIDMNNIDIYLCLG IEC KKDL I NDNDVKW+YHIITSNVERHI LI
Sbjct: 1   MYRSLRSMLTSIIDMNNIDIYLCLGPIECGKKDLAIRNDNDVKWVYHIITSNVERHIALI 60

Query: 202 VHSVGPLSICLGSSSSSSFQTQIHDDG 228
           VHSVGPLSICLGSSSSSSFQTQIHDDG
Sbjct: 61  VHSVGPLSICLGSSSSSSFQTQIHDDG 87

[Close]
BLAST of MELO3C034594.jh1 vs. NCBI nr
Match: XP_008461035.1 (PREDICTED: uncharacterized protein LOC103499740 [Cucumis melo])

HSP 1 Score: 110 bits (274), Expect = 4.76e-24
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 237 MSKVDSNFSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK 293
           MSKVDS FSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK
Sbjct: 1   MSKVDSKFSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK 57

[Close]
BLAST of MELO3C034594.jh1 vs. NCBI nr
Match: XP_008463665.1 (PREDICTED: uncharacterized protein LOC103501761 [Cucumis melo])

HSP 1 Score: 100 bits (248), Expect = 5.25e-21
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 237 MSKVDSNFSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK 293
           MSKVDSNF+LKVQDMFSTKSL K+CVQ IA ++NFQYVTVKSNKEVMILQCAIE+CK
Sbjct: 1   MSKVDSNFALKVQDMFSTKSLFKQCVQAIAFKNNFQYVTVKSNKEVMILQCAIEHCK 57

[Close]
BLAST of MELO3C034594.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BT85 (uncharacterized protein LOC103493267 OS=Cucumis melo OX=3656 GN=LOC103493267 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 1.21e-60
Identity = 104/116 (89.66%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 178 TNDNDVKWIYHIITSNVERHIVLIVHSVGPLSICLGSSSSSSFQTQIHDDGGKFFENIDM 237
           TNDNDVKW+YHIITSNVERHI LIVH VG LSICLGSSSSSSFQTQIHDD G+FFEN+DM
Sbjct: 2   TNDNDVKWVYHIITSNVERHIALIVHYVGLLSICLGSSSSSSFQTQIHDDRGRFFENMDM 61

Query: 238 SKVDSNFSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK 293
           SKVDSNF+LKVQDMFSTKSL KKCVQVIALRDNFQYVT+KSN EVMILQC IENCK
Sbjct: 62  SKVDSNFALKVQDMFSTKSLFKKCVQVIALRDNFQYVTMKSNNEVMILQCVIENCK 117

[Close]
BLAST of MELO3C034594.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DG45 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00050 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 1.26e-41
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 142 LYSSLRSMLGNIIDMNNIDIYLCLGLIECVKKDLTITNDNDVKWIYHIITSNVERHIVLI 201
           +Y SLRSML +IIDMNNIDIYLCLG IEC KKDL I NDNDVKW+YHIITSNVERHI LI
Sbjct: 1   MYRSLRSMLTSIIDMNNIDIYLCLGPIECGKKDLAIRNDNDVKWVYHIITSNVERHIALI 60

Query: 202 VHSVGPLSICLGSSSSSSFQTQIHDDG 228
           VHSVGPLSICLGSSSSSSFQTQIHDDG
Sbjct: 61  VHSVGPLSICLGSSSSSSFQTQIHDDG 87

[Close]
BLAST of MELO3C034594.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V6U1 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00560 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 1.09e-39
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 142 LYSSLRSMLGNIIDMNNIDIYLCLGLIECVKKDLTITNDNDVKWIYHIITSNVERHIVLI 201
           +Y SLRSML +IIDMNNIDIYLCLG IEC KKDL I NDNDVKW+YHIITSNVERHI LI
Sbjct: 1   MYRSLRSMLTSIIDMNNIDIYLCLGPIECGKKDLAIRNDNDVKWVYHIITSNVERHIALI 60

Query: 202 VHSVGPLSICLGSSSSSSFQTQIHDDG 228
           VHSVGPLSICLGSSSSSSFQTQIHDDG
Sbjct: 61  VHSVGPLSICLGSSSSSSFQTQIHDDG 87

[Close]
BLAST of MELO3C034594.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CF11 (uncharacterized protein LOC103499740 OS=Cucumis melo OX=3656 GN=LOC103499740 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 2.30e-24
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 237 MSKVDSNFSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK 293
           MSKVDS FSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK
Sbjct: 1   MSKVDSKFSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK 57

[Close]
BLAST of MELO3C034594.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CJS8 (uncharacterized protein LOC103501761 OS=Cucumis melo OX=3656 GN=LOC103501761 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 2.54e-21
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 237 MSKVDSNFSLKVQDMFSTKSLIKKCVQVIALRDNFQYVTVKSNKEVMILQCAIENCK 293
           MSKVDSNF+LKVQDMFSTKSL K+CVQ IA ++NFQYVTVKSNKEVMILQCAIE+CK
Sbjct: 1   MSKVDSNFALKVQDMFSTKSLFKQCVQAIAFKNNFQYVTVKSNKEVMILQCAIEHCK 57

The following BLAST results are available for this feature:
BLAST of MELO3C034594.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452162.12.50e-6089.66PREDICTED: uncharacterized protein LOC103493267 [Cucumis melo][more]
TYK22525.12.61e-4188.51protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa][more]
KAA0062727.12.26e-3988.51protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa][more]
XP_008461035.14.76e-2498.25PREDICTED: uncharacterized protein LOC103499740 [Cucumis melo][more]
XP_008463665.15.25e-2185.96PREDICTED: uncharacterized protein LOC103501761 [Cucumis melo][more]
BLAST of MELO3C034594.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034594.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BT851.21e-6089.66uncharacterized protein LOC103493267 OS=Cucumis melo OX=3656 GN=LOC103493267 PE=... [more]
A0A5D3DG451.26e-4188.51Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7V6U11.09e-3988.51Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3CF112.30e-2498.25uncharacterized protein LOC103499740 OS=Cucumis melo OX=3656 GN=LOC103499740 PE=... [more]
A0A1S3CJS82.54e-2185.96uncharacterized protein LOC103501761 OS=Cucumis melo OX=3656 GN=LOC103501761 PE=... [more]
BLAST of MELO3C034594.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034594.jh1.t1MELO3C034594.jh1.t1mRNA