MELO3C034550 (gene) Melon (DHL92) v4

Overview
NameMELO3C034550
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein
Locationchr10: 25209301 .. 25211860 (+)
RNA-Seq ExpressionMELO3C034550
SyntenyMELO3C034550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAAAAAGAAGAGAAAAGAAAGGAGATAAAGGAAGAAAAATTCCAATTTTCTTTTCTTCTTCTCTTTCCCTCCACCGCCAAGTTTCCCTCATCCATTTCTTCACCAATTTCTTCAATATTTTTCTACACCAAATTTCAGAGGAGAATTCAAAGGGTAGAAGGCTGAGAAAGAAAGAAGAAGAAGTTCAAAGATGTATGTTGAAGAAGACAACGAGTTTGCAAGACAAACTTCTCTATAATTCATTAAACAAATCTCGGGTGTTCTAATCAGTTTGAGCTACACAAAAAGAATTAAGAGGTGAGATTTAAATTTATTGAAAGGTAAATTTTCAAATAAATTTTATGATGAATGCTTGAGCAAATTCTGATATTCATTAGGTGAATTTTGATAGAGAAGATAGGGTAATATTGTTTTCACGTGAAATCAGGAGATCTCTGGTTTTTTTAGTATTTAAGGGTGTATCGATGGAGTTAAGATCTCTATTTAGTATGGTTAAAAAGCTTATTCGATTTATTATAACTCTTATGAAGAAATCATGAACAAAAAATGACTAAAAATAAGTTAAATTGTAGGGACAATTTAAAGGGGTCATGCTCTATGCGATTGTTGGAGTGGTTTTGTTTCAAGGGATATCTGAGATTATACACAGGGAATCAGAATTTCATGTCTTCAGGTAAGTTTTAGAGGCCTTAAAATTAAGATTTTGATATAAAGAAATCTCATTTTGGATAAGTATTGAAAGAGTTATGATTATTTGAATGTTATGCTGCGAATCTGGAAAATTTTGAGAAATGTGTGGAATATGGTTTTATTTCTTAAAGTTAGACTTCTTAAGCATCATATTTAGTGAGCCATATCAAGCATAACATTTGAAGATCATAATATTTAGGTTTATAATACTCGATTTTGGTTGTTTGACAGGTTAAGAAAAAATAGGTCGGGTATACACACTGGGGAACTAGTCTAAGACTGTGAGTGACAAAAAAAGTTTTGAAAATGATTCTTTTTTAAAAAAATTGTTTCATATAACTAAATGTTTAAGGTGCTTGACTACAAGTTTATAAATGATATTTGATTTCTATGTTTACCTTTCGAGTATGAGTTTCGAGCTTAGATTTCGTAATGGAATCCACATGTTAGAACTTAATTAATGAGTTTTGAAAAAGCAGTTGAAATGACATTTGTTTAAGTAAAGCATAGTTTAAGCCAGAATTATTTTAAGATTTTTGGTTTTTCCACAAACAAGTTGAGTAAGTTTGAGTTTATGCAAGATTAAGATAAGCGTACATGTTTTAATGTTTTCATATGCTTTATGATTTTTCCATTGACTACATGACTGAGATCTTGAGCCTGAGCCTGTGTGCATACAGGTTATGTTCGTTGTTGACATTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGCCAGCCCCACTACGACAAAGACGATAAGAGTGCTGGGTGGGCCCCACTACATCATAGAACTAGTAAACGTCGGTTGTACTGGGCGTGCCCTACACAACGTAATGAAGTAATGTTAGTTAAATAGTTTATAAATAGGAAATGTCTTGCTAGATTTTATAGATATACGTATTAAATGTTTAAAAGTGCTGGTTTATGAAAATATTTACAGTTAACGTCTTTGCTTGTTAGATTTATAAGTTTTAAATGATTACCATGAGTTCTGAATTACAATTTTAAAGTATTGTCACTCACTAGGCTTTATAGCTTATCCTTCCAACATGTTTTACCCAATTTCCAGGCAGAGATCGAGTTCCTGGTACGTGGTTAGATTGTGCCTAATGTCTGTTGTGTTATGATGTATATATCTTTGTATGATATAGATACTCTACAGTTTGGGTAAGTTTAGGAGCTGCATTTGAGTAAACCTTTGTGGGTTATGTTTTGGTTAAGGTGTGTCCGTGTTTACTTGCGCAATCAGTTATTTTCGGGCTACACTTACATGTATGTTTATGATTAGTCTAGGTTCCGCTGTGTTATGTTACATGTATAATAGTTTTTATACTAGATTAGAAAGTTTATCACATTAATGAATTTAACAGAGTCGACAGATATCGATAGAGAAAAGTGTTGTCGGACGGCTTCACGTCGTCTTTCGGTCTAAGCTAGCAGATAGTCCGGGAAGGCGTGTGACATCTTGGACATTTGAAAACATAAAAGGTGAAAATAGGATCACCATTGTGATGATACGGTTAAGTTATTAGAAGTTTCTATGATTATTAATACCTCAAAATCTGATGGTTGGATCTTCAAAAAGACAATCGTTAGTATAAATTGCAGAAGTGAACATCCCTGTTTTTAGTATAAGCCTATCACAAAATACACTTCCAAAAAGCTGCATTTTATATTTAATGTCGCTAGTTACACAAGCACCCATTCATACACGTATACATCTATATATTTTGTTTTGTATGAAGCCGAGCTTTCAACAAGAGAAATGAAAGAATGTACAAGGACAGAAAAAACCGAGCTTTCAACAAAATAATGTACAAGAGAAATGAAAGAATGTCAATAAATTGCAGCTAA

mRNA sequence

ATGGAGAAAAAAAGAAGAGAAAAGAAAGGAGATAAAGGAAGAAAAATTCCAATTTTCTTTTCTTCTTCTCTTTCCCTCCACCGCCAAGTTTCCCTCATCCATTTCTTCACCAATTTCTTCAATATTTTTCTACACCAAATTTCAGAGGAGAATTCAAAGGGTAGAAGGCTGAGAAAGAAAGAAGAAGAAGTTCAAAGATGTATGTTGAAGAAGACAACGAGTTTGCAAGACAAACTTCTCTATAATTCATTAAACAAATCTCGGGGACAATTTAAAGGGGTCATGCTCTATGCGATTGTTGGAGTGGTTTTGTTTCAAGGGATATCTGAGATTATACACAGGGAATCAGAATTTCATGTCTTCAGGCTTTATAGCTTATCCTTCCAACATGTTTTACCCAATTTCCAGGCAGAGATCGAGTTCCTGAGTCGACAGATATCGATAGAGAAAAGTGTTGTCGGACGGCTTCACGTCGTCTTTCGGTCTAAGCTAGCAGATAGTCCGGGAAGGCGTGTGACATCTTGGACATTTGAAAACATAAAAGGTGAAAATAGGATCACCATTGTGATGATACGCCGAGCTTTCAACAAGAGAAATGAAAGAATGTACAAGGACAGAAAAAACCGAGCTTTCAACAAAATAATGTACAAGAGAAATGAAAGAATGTCAATAAATTGCAGCTAA

Coding sequence (CDS)

ATGGAGAAAAAAAGAAGAGAAAAGAAAGGAGATAAAGGAAGAAAAATTCCAATTTTCTTTTCTTCTTCTCTTTCCCTCCACCGCCAAGTTTCCCTCATCCATTTCTTCACCAATTTCTTCAATATTTTTCTACACCAAATTTCAGAGGAGAATTCAAAGGGTAGAAGGCTGAGAAAGAAAGAAGAAGAAGTTCAAAGATGTATGTTGAAGAAGACAACGAGTTTGCAAGACAAACTTCTCTATAATTCATTAAACAAATCTCGGGGACAATTTAAAGGGGTCATGCTCTATGCGATTGTTGGAGTGGTTTTGTTTCAAGGGATATCTGAGATTATACACAGGGAATCAGAATTTCATGTCTTCAGGCTTTATAGCTTATCCTTCCAACATGTTTTACCCAATTTCCAGGCAGAGATCGAGTTCCTGAGTCGACAGATATCGATAGAGAAAAGTGTTGTCGGACGGCTTCACGTCGTCTTTCGGTCTAAGCTAGCAGATAGTCCGGGAAGGCGTGTGACATCTTGGACATTTGAAAACATAAAAGGTGAAAATAGGATCACCATTGTGATGATACGCCGAGCTTTCAACAAGAGAAATGAAAGAATGTACAAGGACAGAAAAAACCGAGCTTTCAACAAAATAATGTACAAGAGAAATGAAAGAATGTCAATAAATTGCAGCTAA

Protein sequence

MEKKRREKKGDKGRKIPIFFSSSLSLHRQVSLIHFFTNFFNIFLHQISEENSKGRRLRKKEEEVQRCMLKKTTSLQDKLLYNSLNKSRGQFKGVMLYAIVGVVLFQGISEIIHRESEFHVFRLYSLSFQHVLPNFQAEIEFLSRQISIEKSVVGRLHVVFRSKLADSPGRRVTSWTFENIKGENRITIVMIRRAFNKRNERMYKDRKNRAFNKIMYKRNERMSINCS
Homology
[Close]
BLAST of MELO3C034550 vs. NCBI nr
Match: TYK02787.1 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-04
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 80  LYNSLNKSRGQFKGVMLYAIVGVVLFQGISEIIHRESEFHVFRLYSLSFQHV 132
           LY    ++ GQ KGV++Y IVGVVLF+G+SEIIH+ES+ HV R Y +   ++
Sbjct: 705 LYGRPCRTPGQVKGVVVYVIVGVVLFRGMSEIIHKESDLHVLRGYRVHTSYI 756

[Close]
BLAST of MELO3C034550 vs. NCBI nr
Match: KAA0041324.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 5.5e-04
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 80  LYNSLNKSRGQFKGVMLYAIVGVVLFQGISEIIHRESEFHVFR 123
           LY    ++ GQ KGV++Y IVGVVLF+G+SEIIH+ES+ HV R
Sbjct: 725 LYGRPCRTPGQVKGVVVYVIVGVVLFRGMSEIIHKESDLHVLR 767

[Close]
BLAST of MELO3C034550 vs. ExPASy TrEMBL
Match: A0A5D3BTJ5 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00460 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 80  LYNSLNKSRGQFKGVMLYAIVGVVLFQGISEIIHRESEFHVFRLYSLSFQHV 132
           LY    ++ GQ KGV++Y IVGVVLF+G+SEIIH+ES+ HV R Y +   ++
Sbjct: 705 LYGRPCRTPGQVKGVVVYVIVGVVLFRGMSEIIHKESDLHVLRGYRVHTSYI 756

[Close]
BLAST of MELO3C034550 vs. ExPASy TrEMBL
Match: A0A5A7TCY8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003250 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 80  LYNSLNKSRGQFKGVMLYAIVGVVLFQGISEIIHRESEFHVFR 123
           LY    ++ GQ KGV++Y IVGVVLF+G+SEIIH+ES+ HV R
Sbjct: 725 LYGRPCRTPGQVKGVVVYVIVGVVLFRGMSEIIHKESDLHVLR 767

The following BLAST results are available for this feature:
BLAST of MELO3C034550 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK02787.12.5e-0451.92RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c... [more]
KAA0041324.15.5e-0460.47DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C034550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTJ51.2e-0451.92RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c... [more]
A0A5A7TCY82.6e-0460.47DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of MELO3C034550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034550.1MELO3C034550.1mRNA