MELO3C034545 (gene) Melon (DHL92) v4

Overview
NameMELO3C034545
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein Ycf2-like
Locationchr10: 24948109 .. 24948861 (+)
RNA-Seq ExpressionMELO3C034545
SyntenyMELO3C034545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGTTGTTTCATTTTCACACTTCTGTTCATTCTTCAACCTTTGGACTTATTCTCTATTCTCACATCTTCTGCAGGTAGATAAAAAATACCTAGTCCTCAAATTTTCTTCTTAAGATTTGTTCCCGATTCTAACATTCTTCAAATTTTCAAATCGCTTTCCACCGGCATCTGTTTTCGATTTTGTTCTTGACTGGTGTTCTTCTATTTTGAAAATATAGTACTAACTTTTTTTTCCACTTAAATGTTAAATTTATAGATAGGCATATTTATATTTTATTTGTTTAATTTAATCTTTCTAAAATAAAGGACATAAAATGTGAACATATATGTCCTTTATTTCAGGAAGATTAATTGGGATTTGTTGTATAGTTATAAATATATATTGTCCTTAATAATTTTTATAAATTGTAGAGAATATAAAGATGAAAAAGGGGAAGGGAGAGGTCAAAACAAGAGACGCGGGGATCACTGGTTCTAAGAAACGATTGCCAACTGAAATTCAAAGTCTGTCGAGTTCTTCTGAGGAGGTACAAATACGGGGTATATCCAATATCAGTTCTAGGTAATTCACTACTCAAATACGGAGTATTTCGAATATCAATAGCAAAGATACAGTGTCAACGATAACAAGTAGATAATTGTTGGGGAATTTTGATATGACTAACATAATCCAAGACACATCCTTATCATCAACAATCCGAATGAGGTTCGAATTGTTGCAAATCAGTCCAGTAAACGGTCAACCTAG

mRNA sequence

ATGGTGAGTTGTTTCATTTTCACACTTCTGTTCATTCTTCAACCTTTGGACTTATTCTCTATTCTCACATCTTCTGCAGAGAATATAAAGATGAAAAAGGGGAAGGGAGAGGTCAAAACAAGAGACGCGGGGATCACTGGTTCTAAGAAACGATTGCCAACTGAAATTCAAAGTCTGTCGAGTTCTTCTGAGGAGGTACAAATACGGGGTATATCCAATATCAGTTCTAGACACATCCTTATCATCAACAATCCGAATGAGGTTCGAATTGTTGCAAATCAGTCCAGTAAACGGTCAACCTAG

Coding sequence (CDS)

ATGGTGAGTTGTTTCATTTTCACACTTCTGTTCATTCTTCAACCTTTGGACTTATTCTCTATTCTCACATCTTCTGCAGAGAATATAAAGATGAAAAAGGGGAAGGGAGAGGTCAAAACAAGAGACGCGGGGATCACTGGTTCTAAGAAACGATTGCCAACTGAAATTCAAAGTCTGTCGAGTTCTTCTGAGGAGGTACAAATACGGGGTATATCCAATATCAGTTCTAGACACATCCTTATCATCAACAATCCGAATGAGGTTCGAATTGTTGCAAATCAGTCCAGTAAACGGTCAACCTAG

Protein sequence

MVSCFIFTLLFILQPLDLFSILTSSAENIKMKKGKGEVKTRDAGITGSKKRLPTEIQSLSSSSEEVQIRGISNISSRHILIINNPNEVRIVANQSSKRST
Homology
[Close]
BLAST of MELO3C034545 vs. NCBI nr
Match: TYK09870.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-09
Identity = 44/56 (78.57%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 27  ENIKMKKGKGEVKTRD------AGITGSKKRLPTEIQSLSSSSEEVQIRGISNISS 77
           ENIKMKKGKGEVKTR       A I GSKKRLPT IQSLSSSSEEVQIR ISN SS
Sbjct: 168 ENIKMKKGKGEVKTRTSDRLRAARINGSKKRLPTGIQSLSSSSEEVQIRDISNTSS 223

[Close]
BLAST of MELO3C034545 vs. NCBI nr
Match: KAA0056158.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-05
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 27  ENIKMKKGKGEVKTRD------AGITGSKKRLPTEIQSLSSSSEEV 67
           ENIKMKK KGEV+TR       AGITGSKKRLPT IQ+LSSSS+EV
Sbjct: 72  ENIKMKKRKGEVRTRTSDRLRAAGITGSKKRLPTGIQTLSSSSDEV 117

[Close]
BLAST of MELO3C034545 vs. ExPASy TrEMBL
Match: A0A5D3CEU7 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00400 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 44/56 (78.57%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 27  ENIKMKKGKGEVKTRD------AGITGSKKRLPTEIQSLSSSSEEVQIRGISNISS 77
           ENIKMKKGKGEVKTR       A I GSKKRLPT IQSLSSSSEEVQIR ISN SS
Sbjct: 168 ENIKMKKGKGEVKTRTSDRLRAARINGSKKRLPTGIQSLSSSSEEVQIRDISNTSS 223

[Close]
BLAST of MELO3C034545 vs. ExPASy TrEMBL
Match: A0A5A7UM43 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00480 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 27  ENIKMKKGKGEVKTRD------AGITGSKKRLPTEIQSLSSSSEEV 67
           ENIKMKK KGEV+TR       AGITGSKKRLPT IQ+LSSSS+EV
Sbjct: 72  ENIKMKKRKGEVRTRTSDRLRAAGITGSKKRLPTGIQTLSSSSDEV 117

The following BLAST results are available for this feature:
BLAST of MELO3C034545 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK09870.13.3e-0978.57protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0056158.14.9e-0573.91protein Ycf2-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C034545 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034545 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CEU71.6e-0978.57Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G004... [more]
A0A5A7UM432.4e-0573.91Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00... [more]
BLAST of MELO3C034545 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034545.1MELO3C034545.1mRNA