MELO3C034466 (gene) Melon (DHL92) v4

Overview
NameMELO3C034466
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTy3-gypsy retrotransposon protein
Locationchr10: 19161943 .. 19170309 (+)
RNA-Seq ExpressionMELO3C034466
SyntenyMELO3C034466
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACAACACAAGAACCCTACATCTGCGGTAAGAATGGACGATAACCTGAGAAACCCATGTGACACTTTGGTAGACTGACTTGAGGCCAAGCTTGTCAAATAAAGCTAACTTATGATGAAGTGGATTTCTAGGGGTGGTGACAGAACATAGGATTTCCTATAATTTTGGGACCGGCTACATTTGGTTTGTTAGTGTATGGACATTTGGGTGCCTCTTCTAAAGATGATGATATAATTTGTTCTGTTGCTTCATATCATAGAAATTAAAGCAAAAAATAGACACATCCAATCATGAAACAATCTAATTACCAAAATGCAGAAATTTTAACTCTCACTCCAATGGAAGAACAAAAATCTGTAGTTACATTAATTCCAAATCCCAAGTAACCCTGCACATATAGATGGTGCATCTAGATAAATGTTCAACAACCCTCACATATAAACACATTGATTTTTGCTAAGTGATCATGGGTCCCTTATGGATTTCTTACATACATATAAAATCAAAACACTTGGAGAAAAACACATGAACGGTGGGAAATTTTCACTTGATTCTACACCAAATTAATAAATTAACTGTACTAAAATTTGTAGTATTGGTAGCTTTGAAATTAAATTGTTTACAATTCTAAGTAACCAAGGGGGCTTTGAAATTGAAGTTTATGGAATAAATAAATTGCAGAGAATTTTAAAGAGAGACAGAATTCAATAGTTACAGCTATTATTATGATTTTCACTATCATTGTTGTCTTCACCATTTGCTAAATTATGTTTACTATTATCAGTCGCTAAATCAGCCAAAGTGAAACCATCATGTGCACAAATAAGTTGACACTATTCCATGGTTTCTGTAATGCCCCAACAGATTGGGGTTTTCATTTATTCATATCGAGAGAAATTTTGTAAATTCGAAGTTGTTTATGAAATTGGATTATTTTGACCTTATAATTAATTAAGGTTAAAGAGTTACTTTGGTTGCCACAGCCATTTTTCCAGGCCACCGTACGCCATTTTTCAGAAGATGGAAGATCGACCGCCACAGGCCACCGTACGCCATTTTTCCAGCCGCATCCATTCTCCCAGCCGCATCGGAGAACAGATCAAGTCGAGCCGCCGCACGCCAAGCGACAGCCACGCACGCTGCACTCGCGTCTGTCCCGCCGACCTCCAAGCCGTCAGATTCGCGCCGTCAGCTGCCCGACTTCGCCAGCCGATCTTCCATCGTCCGCGTCGTGCCGCAGCCAAGTTGCAAGCCGCGTCGCACCTCGATCCAAGCCACATCGTCGCGCGCTGGCCGTCGGAGCCGCGAAGCCCGTCGCTCGACCCCGCGCCATCTTCTGAAACACGACACGCGTCTGCGTGCAAGCCGCGCCGCGTGCATCCGCGTAACCGAGCCGCGTCCGCGTGCAAGCCGCACCGCGTGCATCTGCGTAACCGAGCCGCGTCCGCGTGCAAGCCGCGCCGCCTGCACCGCAAGCTGAGCCGCGCCTTCCTTCTGTCGCAAGCCGAGCCACATGCGCAAAGTTTCTGTACCGAGCCGAGCCGAGCCGCGCCTGCGCCAAGCCAAAGTCGGTCCCTGTTCTTTTTCCAGCCGAGCCGTCAAGCCTAGTTGGCTCTTTTCCACCCAATTTTTGGTAAATTAATTATGTGTTTTGGCTTACCCAGCAAGACTCAATTTTTGGACACTAAATAATTTAAATTGGACTAAATCAAATTAACTCTTTTAAGGCCACCTTGGACGATTTGACTTGGAGCGTTGGATTTCTTCAGTAGGGGCTCAAGCATTGCAACCTCTTTCTAGGGTAAGTCATTTCAACTGAGTTTTGAGCCGTTAGTCGTTGGTGACTTAATTATGAGTTTTGGCGTATGAAACAGTTAGGACCTCGTTGCTTGGAAAGCACACTTGTCTTGCGGTTAGGACTCGTCGAGTAAATCTCCAGGTAAGAGATTTCTACTACTAGCTCTATGTTTAGAACTACGAGATCACATACACCTTCAGTTGTGCATGTTAAGGACTAGATTGTATGATACGTGTAATTAATGAGAGCATGATGCGATTGATGACATGGTTACATTATGGCATGATATTGTGATGACGTGAATTGTTATGACTATACGCCGGTTATTAAGGCGGAAAGTAAGATGATGATTAGTTTGTTATGATTACATGATAATGTTACGTGCATGTATGTTATGGTTAGGGTACTTGTTAGCTTAGCCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGCGTTGTCCGACGGGGCGCCAGTCTAGCATGGATATAGATGTGACTCGAGTGACTCGACGGGGTCCTCGCATCCCGATTGTCCTAGGTGCTCCCCCGGGACACCGAAGACCAGATTCTCGTTCCTACGGGAGCGCATGTTGCACGTGTTCGGGAACGTGCCAGAGATTTGGTACCATTTACAGGACTCTAATATGAAGCTAACAGGCATCTAGTGGGACTAGTAGTGGGTCCCTTACTGAGTATTTTATACTCACTCTCTTCATGTCATGTTTTTTAGGTAGAGGCCGAGGCAAGGGCAAAGGCAAGCTGGCGAGCGACCAGAAGTGACCGTGGCGAGCCATAGGGATTCATGCTTCCGCCTACACTTATTTTTTGACAATTAGTGCCTGAGTTTTGTTTTCTTCACCATTTACTATTTCTTTTCTTTAAAAGTAGATAGGGCCCGAGTAGGACTTTAGTATTTGATCTTATTTCGCATATTACCTTGATTGATTTTCATAAATAAGTTTCCCAAATTTTATTTGTTTTTACTAAATTTTATGACTTAAACCACGTGTTTTACATTCAGTAATGACTGCGACTCAGTATAAGGAGTTGGGTTGTTACAGTTGGTATCAGAGCACAATGTTTTAGGTTATGTAGACTAACCTACTATGTAAGTCATTGTTTTATTTTGGTTTTACTTCACCCTATGGCTATACGGTCCTTCGGCACTCGTCAGGTATGTCTTAAGCCTTGCTAATGTTAAGATTATAATTTTGCTTGAATAGACTAGACCTAGAGATAGGAGTGTTAAGTCCTTGTGGTGAAAAGTTTTGTTGGTGAATTTTAGGGAGAATGCCGCCACGTAGAGGTGCACGCCGAGGAGGTGGTAGGGGAGGCAGAGGAGTCGGTCGTGGCCAGCCGGAGGAGCAACCTGCTGTGCCGACGGTCGACCCTAACGCACCGATCACCCAGGCGGATCTTGCCGCGATGGAGCAGCGTTATCAGGACATGCTGCAAGCTGCTCTAGCGCCTTTCCTCGCTGCTCAGCAGAACAGGGCCGCCCCTGTCCAGGCCCAGACCGTTACTCCTCCAGCCCCTGTGGAAGCTCAACCTCTGCCAGTTCAACTGTCGGCTGAGGCTAAACACTTAAGAGACTTTAGGAAGTATAATCCTAAGACCTTTGACGGATCTATGGACAACCCCACAAAGGCCCAAATGTGGTTGACGTCCATAGAGACTAGAAGGTGCAGTGTGCAGTTTTCTTCTTTGAGGATAGGGGCACCGCCTGGTGGGAGACTGCTGAGAGGATGCTGGGGGGCGACGTCAGCAAGATAACTTGGGAGCAGTTCAAGGAGAACTTCTATGCTAAGTTCTTCTCTGCCAACGTGAAGCACGCCAAGTTGCAAAAGTTCCTAAACTTGGAGCAAGGAGATATGACTGTGGAGCAGTACGACGCCGAGTTCGACATGTTGTCCCGTTTCGCTCCCGATGTGGTAAGAGATGAGGCTGCCAGGACGGAGAAATTCGTTAGAGGACTCAGGCTAGACCTTCAGGGCATTGTCCGAGCTCTCCGGCCAGCCACTCATGCTGATGCACTACGTATAGCACTGGATTTGAGCCTACATGAGAGAGCTGATTCGTCTAAGGCTGACGGCAGAGGGTCAGCCTTGGGACAGAAGAGAAAGGTGGAGACGCAGCCTGACGTAATACCGCAGCGAACTCTGAGGTCAGGAGGTGTCTTTCAGAGACACCGACTGGAGCTTGCAGCAGCCGGGAGGACTCTGAGAGAGCTACCCGCTTGTACTACCTGTGGGAGAGTCCATGGAGGTCGTTGCTTGGCTGGGAGTGTGGTCTGCTTCAGGTGCAGACAATTGGGGCACACTGCTGATGCGTGTTCTCAGAAACCCTTTGAGACGACACCGCACCAGCCTTCTGCTTCCCAGCAGGGGAGAGTTTTTGCCACTACCCGGCAGGAGGCCGAGCGAGCTGGTACAGTGGTGACAGGTACGCTCCCAATCTTGGGGCATTATGCTTTTGTACTATTTGACTCTGGGTCATCCCACTCGTTTATATCCTCTGTATTCGTTCAGCATGTGGGTTTAGAGGTAGAACCTTTGGGTAATGTTTTGTCTGTTTCTACTCCATCTGGGGAGGTCCTGTTGTCTAAAGAAAAAATAAAGGCATGTCAAGTAGAGATAGCGAATCATGAGTTAGACGTGACCCTGCTAGTGTTAGATATGCAGAATTTTGATGTGATTTTAGGCATGGATTGGCTGTCAGCTAACCATGCAAGCATAGACTGTTTTGGTAAGGAAGTCGTCTTTAATCCTCCCTCGGGGCCTAGTTTCAAGTTTAGGGGGGCAGGCATGGTATGTGTACCCAAGGTCATCTCAGCCATGAAGGCTAGCAAACTACTCAGCCAGGGTACTTGGGGCATCTTGGCAAGCGTAGTAGATATTAGAGAGCCAGAAGTTTCCTTATCTTCTGAACCAGTGGTAAGGGAGTACCCTGATGTTTTTCCCAATGAGCTTCCAGGACTTCCGCCTCCCAGAGAGGTAGACTTCCCCATCGAGTTAGAACCGGGCACTGCTCCTATCTCGAGGGCACCTTACAGAATGGCTTTGGCCGAGCTAAAGGAGCTGAAGGTCCAGTTGCAGGAGTTGCTGGACAAGGGTTTCATCCGGCCCAGCGTGTCACCTTGGGGAGCCCCATTGTTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACCGAGAGCTGAACAAGGTGACAGTTAAAAACTGCTACCCCTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATCAGGGACAGTGACATTCCCAAGACGGCCTTTCGATCAAGGTACGGACATTACGAGTTCATTGTGATGTCTTTTGGCTTAACTAATGCCCCTGTCCCTGCAGAGTTCATGGATTTGATGAACAGGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTCTTCATTGATGACATCTTGATTTACTCAAAAACTGAGGCTGAGCACGAGGAACACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAACAAGTTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAAGAAGGTGACGTTCCTTGGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTGGATCCAGCAAAGATCGAAGCGGTGACCAACTGGCCTCGACCGTTTATAGTTAGTGAAATTCGAAGTTTTCTGGGCTTGGCAGGTTACTACAAGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCGTTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTCTGGAGCCCAGCATGCGAGAGTAGCTTCCAGGAGCTCAAGCAGAAGCTGGTGACTGCACCAGTCCTGACAGTGCCCGATGGGTCGGTAAGTTTTGTGATCTATAGTGATGCCTCCAAGAAGGGAATGGGCTGTGTTCTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTATCCTACCCACGACTTAGAGCTGGCAGCTGTAGTCTTTGCACTGAAGATATGGAGGCACTACCTGTACGGTGAGAAGATACAGATTTACACTGACCACAAGAGCCTGAAGTACTTCTTCACCAGAAGGAGTTGAACATGAGGCAGAAGAGGTGGCTCGAGTTGGTGAAAGACTATGACTGCGAGATTCTGTACCACCCAGGTAAAGCAAATGTAGTGGCTGACGCGATGAGTAGGAAGGTTGCACATTCAGCAGCGCTGATCACCAAGCAAACCCCCTTACTCAGAGATTTTGAGAGAGCCGAGATTGGAGTCTCAGTAGGAGAGGTTACCTCACAGTTGGCTCAGTTGTCAGTTCAGCCAACCTTGAGGCAAAAGATTATCGTTGCTCAGCTGAATGATCCTTACTTGGTCGAGAAGCGTCGTTTGGTAGAGACAGGGCAAGGTGAGGACTTCTCCATATCCTCTAAAGATGGTCTTATGTTTGAGGGACACCTATGTGCGCCGGAAGACAGCGCAGTCAAGACAGAACTTTTGATTGAGGCTCACAGTTCTCCATTTACCATGCACCCTGGAAGTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGAAACATGAAGAGAGAGGTGGCAGATTTTGTCAGTAGGTGCTTGGTGTGCCAGCAGGTGAAGGCACTTAGACAGCGACCAGCCGGGTTGTTACAACCCTTGAGTGTACCAGGATGGAAGTGGGAAAGCGTGTCGATGGACTTCATCACGGGACTGCCTAAAACCCTAAAGGGCTATACAGTGATCTGGGTTTTTGTCGACAGACTCACGAAGTCGGCCCACTTTGTGCCAGGGAAGTCCACTTACACTGCCAGTAAGTGGGGGCAGTTATATATGACAGAGATTGTGAGACTACATGGAGTGCCCGTATCCATCATTTCAGACAGAGATGCCCGTTTCACATCGAAATTCTGGAAAGGACTTCAACTTGCGCTAGGTACGAGGTTAGACTTCAGCCGACCTTCCACCCTCAGACTGATGGTCAGACAGAGAGATTGAACCAGATTGTGGAAGACATGCTGCGAGCCTGCGTGCTAGAGTTTTTAGGGAGTTAAGACTCCCATCTGCATCTGATGGAGTTCGCCTATAATAACAGTTACCAGGCTACTATCGGTATGACACCGTTTGAGGCTCTGTATGGTAAGTGTTGTAGATCTCGCGTCTGCTGGGGCAAGGTTGGTGAACAGAGGATGCTAGGCCCCGAGTTAGTGCAGACCACCAATGCAGCCATACAGAAGATCCGAGCTCGTATGCTGACAGCACAGAGCAGACAGAAGAGTTATGCTGATGTACGACGTAAGGATCTCGAGTTTGAGGTAGGAAACATGGTCTTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGTGAAGAAGGGGAAGCTGAGTCCATGCTTCGTAGGGCCGTTTGAGATACTGGAGCGGATTGGTTCCGTGGCCTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCATGACGTATTCCATGTTTCCATACTGAGGAGGTATGTCGCAGACCAGACGCATGTAGTGGACTTCGAGCCACTACAAGTCAGCGAGAACTTGAGCTATGAGGAGCAGCCTGTCGAGATCTTGGCAAGGGAGGTCAAGAAGCTTCGTAGTTGAAAAATTTCACTGGTCAAAGTCCTTTGGCAGAACCATGGAGTGGAAGAGGCTACGTGGGAGAGAGAAGAGGACATGAGGGCTCAGTACCCCGAGCTGTTCAAGGATTAGAACTTTCGAGGACGAAAGTTTCCTAAGGAGGGAAGGTTATAACACCCCAACAGATTGGGGTTTTCATTTATTCATCTCCAGAGAAATTTTGTAAATTCGAAGTTGTTTATGAAATTGGATTATTTTGACCTTATAATTAATTAAGGTTAAAGAGTTACTTTGGTTGGATACTTGATTAATGAGGTTTAAGGATAAAATAAAAATAATTATTTGTGAAGGTAACAAATTTAATTAATGTCTTAGAAAGGGTCAATTGTTGGGTTTAATGAAGAGAGAAAGTGGATGGTTGTTATTGGATTAAAGTAGGAAAACAAAAGGGATAAAAGAAAGTAATAATGATTATTTTATTATTGTTTCTTTTATTAAAAAGGGGCATTGGAAGGCGTGAAATTCATCTTCTCCCCAAGAAAACCCTAATCCCAAACTCTCCCACCCTAGCCGTCGCCGCCGCGGATCGACCGCCCCAGGCCACCGCACGCCATTCTCCCAACCGCGTCGGAGAACAGATCAAGTCGAGTCGCCGCACGCCAAGCGACAGCCACGCACGCCGCGCTCGCGTCTGTCCCGCCGACCTCCAAGCCGTCAGATTCGCGCCGTCAGCTGCCCGACTTCGCCAGCCGATCTTCCATCGTCCGCGTCGCGCCGCAGCCAAGTCGCAAGCCGCGTTGCACCCCGATCCAAGCCACATCGCCGCGCGCTGGCCGTCGGAGCCGTGA

mRNA sequence

ATGCCAACAACACAAGAACCCTACATCTGCGTCGCTAAATCAGCCAAAGTTAAAGAGTTACTTTGGTTGCCACAGCCATTTTTCCAGGCCACCGTACGCCATTTTTCAGAAGATGGAAGATCGACCGCCACAGGCCACCGTACGCCATTTTTCCAGCCGCATCCATTCTCCCAGCCGCATCGGAGAACAGATCAAGTCGAGCCGCCGCACGCCAAGCGACAGCCACGCACGCTGCACTCGCGTCTGTCCCGCCGACCTCCAAGCCGTCAGATTCGCGCCGTCAGCTGCCCGACTTCGCCAGCCGATCTTCCATCGTCCGCGTCGTGCCGCAGCCAAGTTGCAAGCCGCGTCGCACCTCGATCCAAGCCACATCGTCGCGCGCTGGCCGTCGGAGCCGCGAAGCCCGTCGCTCGACCCCGCGCCATCTTCTGAAACACGACACGCGTCTGCGTGCAAGCCGCGCCGCGTGCATCCGCGTAACCGAGCCGCGTCCGCGTGCAAGCCGCACCGCGTGCATCTGCGTAACCGAGCCGCGTCCGCGTGCAAGCCGCGCCGCCTGCACCGCAAGCTGAGCCGCGCCTTCCTTCTGTCGCAAGCCGAGCCACATGCGCAAAGTTTCTGTACCGAGCCGAGCCGAGCCGCGCCTGCGCCAAGCCAAATTAGGACCTCGTTGCTTGGAAAGCACACTTGTCTTGCGGTTAGGACTCGTCGAGTAAATCTCCAGAAAGGGGCATTGGAAGGCGTGAAATTCATCTTCTCCCCAAGAAAACCCTAATCCCAAACTCTCCCACCCTAGCCGTCGCCGCCGCGGATCGACCGCCCCAGGCCACCGCACGCCATTCTCCCAACCGCGTCGGAGAACAGATCAAGTCGAGTCGCCGCACGCCAAGCGACAGCCACGCACGCCGCGCTCGCGTCTGTCCCGCCGACCTCCAAGCCGTCAGATTCGCGCCGTCAGCTGCCCGACTTCGCCAGCCGATCTTCCATCGTCCGCGTCGCGCCGCAGCCAAGTCGCAAGCCGCGTTGCACCCCGATCCAAGCCACATCGCCGCGCGCTGGCCGTCGGAGCCGTGA

Coding sequence (CDS)

TGCCAACAACACAAGAACCCTACATCTGCGTCGCTAAATCAGCCAAAGTTAAAGAGTTACTTTGGTTGCCACAGCCATTTTTCCAGGCCACCGTACGCCATTTTTCAGAAGATGGAAGATCGACCGCCACAGGCCACCGTACGCCATTTTTCCAGCCGCATCCATTCTCCCAGCCGCATCGGAGAACAGATCAAGTCGAGCCGCCGCACGCCAAGCGACAGCCACGCACGCTGCACTCGCGTCTGTCCCGCCGACCTCCAAGCCGTCAGATTCGCGCCGTCAGCTGCCCGACTTCGCCAGCCGATCTTCCATCGTCCGCGTCGTGCCGCAGCCAAGTTGCAAGCCGCGTCGCACCTCGATCCAAGCCACATCGTCGCGCGCTGGCCGTCGGAGCCGCGAAGCCCGTCGCTCGACCCCGCGCCATCTTCTGAAACACGACACGCGTCTGCGTGCAAGCCGCGCCGCGTGCATCCGCGTAACCGAGCCGCGTCCGCGTGCAAGCCGCACCGCGTGCATCTGCGTAACCGAGCCGCGTCCGCGTGCAAGCCGCGCCGCCTGCACCGCAAGCTGAGCCGCGCCTTCCTTCTGTCGCAAGCCGAGCCACATGCGCAAAGTTTCTGTACCGAGCCGAGCCGAGCCGCGCCTGCGCCAAGCCAAATTAGGACCTCGTTGCTTGGAAAGCACACTTGTCTTGCGGTTAGGACTCGTCGAGTAAATCTCCAGAAAGGGGCATTGGAAGGCGTGAAATTCATCTTCTCCCCAAGAAAACCCTAA

Protein sequence

CQQHKNPTSASLNQPKLKSYFGCHSHFSRPPYAIFQKMEDRPPQATVRHFSSRIHSPSRIGEQIKSSRRTPSDSHARCTRVCPADLQAVRFAPSAARLRQPIFHRPRRAAAKLQAASHLDPSHIVARWPSEPRSPSLDPAPSSETRHASACKPRRVHPRNRAASACKPHRVHLRNRAASACKPRRLHRKLSRAFLLSQAEPHAQSFCTEPSRAAPAPSQIRTSLLGKHTCLAVRTRRVNLQKGALEGVKFIFSPRKP
Homology
[Close]
BLAST of MELO3C034466 vs. NCBI nr
Match: KAA0039148.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 79/202 (39.11%), Postives = 87/202 (43.07%), Query Frame = 0 

Query: 99   RQPIFHRPRRA------AAKLQAASHLDPSHIVARWPSEP---------------RSPSL 158
            RQPIF   RR+         ++  + L  S   A  P+ P               R P L
Sbjct: 1055 RQPIFQPRRRSVQADPRTPSVRRTARLSQSSPEAEPPALPFAIRSRSVRSRRVKLRQPLL 1114

Query: 159  DPAPSSETRHASACKPRRVHPRNRAASACKPHRVHLRNRAA---SACKPRRLHRKLSRAF 218
              AP         CKP   H          P RV  R RA    SACKPRRLH KLSRA 
Sbjct: 1115 ARAPPRVANRTRVCKPLSAH---------APPRVTNRARACPALSACKPRRLHCKLSRAS 1174

Query: 219  LLSQAEPHAQSFCTEPSRAAPAPSQIR--------------------------------T 245
            LLSQAEPHA S C E SR APAPS++                                 T
Sbjct: 1175 LLSQAEPHAYSSCAELSRVAPAPSRVEPVPVLFPAEPSSLVWLFSTQFLGLKHCNLDLGT 1234

[Close]
BLAST of MELO3C034466 vs. NCBI nr
Match: KAA0048134.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-09
Identity = 73/187 (39.04%), Postives = 87/187 (46.52%), Query Frame = 0 

Query: 99   RQPIFHRPRRAAAKLQAASHLDPSHIVARWPSEPRSPSLDPAPSSETRHASACKPRRVHP 158
            RQPIF +PR+ + +   A    PS       S+P SP  +P       ++ + +  RV  
Sbjct: 1336 RQPIF-QPRQRSVQ---ADPRTPSVRRTARLSQP-SPEAEPPALPFAIYSRSVRSHRVKL 1395

Query: 159  RNRAASACKPHRVHLRNRAA---SACKPRRLHRKLSRAFLLSQAEPHAQSFCTEPSRAAP 218
            R +   A  P RV  R RA    SACKPR L+ KLSRA  LSQAEPHA + C EPSRA P
Sbjct: 1396 R-QPLRARAPPRVANRARACLALSACKPRHLYCKLSRASFLSQAEPHAHNSCAEPSRAGP 1455

Query: 219  APSQIR--------------------------------------TSLLGKHTCLAVRTRR 245
                 R                                      TSLLGKHTCLAVRTR+
Sbjct: 1456 CSFSSRAAKRSLALFHPIFGHLGRFDLERGFLQLGLKHCNLDLGTSLLGKHTCLAVRTRQ 1515

[Close]
BLAST of MELO3C034466 vs. ExPASy TrEMBL
Match: A0A5A7T8E0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00460 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-14
Identity = 79/202 (39.11%), Postives = 87/202 (43.07%), Query Frame = 0 

Query: 99   RQPIFHRPRRA------AAKLQAASHLDPSHIVARWPSEP---------------RSPSL 158
            RQPIF   RR+         ++  + L  S   A  P+ P               R P L
Sbjct: 1055 RQPIFQPRRRSVQADPRTPSVRRTARLSQSSPEAEPPALPFAIRSRSVRSRRVKLRQPLL 1114

Query: 159  DPAPSSETRHASACKPRRVHPRNRAASACKPHRVHLRNRAA---SACKPRRLHRKLSRAF 218
              AP         CKP   H          P RV  R RA    SACKPRRLH KLSRA 
Sbjct: 1115 ARAPPRVANRTRVCKPLSAH---------APPRVTNRARACPALSACKPRRLHCKLSRAS 1174

Query: 219  LLSQAEPHAQSFCTEPSRAAPAPSQIR--------------------------------T 245
            LLSQAEPHA S C E SR APAPS++                                 T
Sbjct: 1175 LLSQAEPHAYSSCAELSRVAPAPSRVEPVPVLFPAEPSSLVWLFSTQFLGLKHCNLDLGT 1234

[Close]
BLAST of MELO3C034466 vs. ExPASy TrEMBL
Match: A0A5A7TYM4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00220 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 73/187 (39.04%), Postives = 87/187 (46.52%), Query Frame = 0 

Query: 99   RQPIFHRPRRAAAKLQAASHLDPSHIVARWPSEPRSPSLDPAPSSETRHASACKPRRVHP 158
            RQPIF +PR+ + +   A    PS       S+P SP  +P       ++ + +  RV  
Sbjct: 1336 RQPIF-QPRQRSVQ---ADPRTPSVRRTARLSQP-SPEAEPPALPFAIYSRSVRSHRVKL 1395

Query: 159  RNRAASACKPHRVHLRNRAA---SACKPRRLHRKLSRAFLLSQAEPHAQSFCTEPSRAAP 218
            R +   A  P RV  R RA    SACKPR L+ KLSRA  LSQAEPHA + C EPSRA P
Sbjct: 1396 R-QPLRARAPPRVANRARACLALSACKPRHLYCKLSRASFLSQAEPHAHNSCAEPSRAGP 1455

Query: 219  APSQIR--------------------------------------TSLLGKHTCLAVRTRR 245
                 R                                      TSLLGKHTCLAVRTR+
Sbjct: 1456 CSFSSRAAKRSLALFHPIFGHLGRFDLERGFLQLGLKHCNLDLGTSLLGKHTCLAVRTRQ 1515

The following BLAST results are available for this feature:
BLAST of MELO3C034466 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0039148.11.1e-1339.11pol protein [Cucumis melo var. makuwa][more]
KAA0048134.12.9e-0939.04ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C034466 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034466 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T8E05.5e-1439.11Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00460 PE... [more]
A0A5A7TYM41.4e-0939.04Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of MELO3C034466 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034466.1MELO3C034466.1mRNA