MELO3C034357 (gene) Melon (DHL92) v4

Overview
NameMELO3C034357
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase domain-containing protein
Locationchr10: 11743242 .. 11745734 (+)
RNA-Seq ExpressionMELO3C034357
SyntenyMELO3C034357
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCTCTGGTTTTTCTTGTATTTCAGAGTGTACCAGTAGAGTTAGAATCTATATTTGGTATGGTTGGAAAGCTTATTCAATTTAATACAACTTTCAGGAAGAAATCATGAACCCAAAACGACTAAAAATCAGTTAAATTGTAGGGACAAGTTAAAGAGGTCGTGTGCGTATGATTCTGGAAGTGGTTCTGTTTCGAGGGTTATCGGAGTTTATGCACGGGGAATCAGATTTATATATCTTCAGGTAAGTTTTAAAGGATCTCAAAATGAAGATTTTGATATAAAGAAAACTCATTTTGGTTAAGTATTAAGGAAGTTTATGTTAGAAATCTGGAAATTTCAGAGAGTTATTGAAATAGGATTTTATTTCTTAAGCTTTGTTTTCGTGAGCGTCATCTTTGGTGCGACGTGTTATGTATATCTTTAGGAAACCAGAATGTTTAGAGTTTTAATACTCGGTTGGGTTATTGACAGGCCGAGAAGAATTAAACCGAGCTTATAGACCAAGGATCTAGCCCAAGACGGTGAGTGACAAAACCAACTTTGAAATATTTTCCATAACTGTTATTATGATTGAATGCGATAAATGTTTATTTACGAAGCCATGAAAGGTATTTGAATTTCATGACTATTTTCAAGTATACATTTGGAGACTAGATTTCTTAAAGAAATTTATGCTAGCACGTAGATATTAAATGTTTGGAAAGTATTTAAACCACAATGTTTTAAGCAAAGCATGAATTAGTAAGAAGTTTTGTTTTAAGAACTACAGTTTTCCACGAAAAAGCTGAGTAAAGTTCGAGCTTTGTGTAAAATTTATAAGCAGACATGTTTTAATATTTTTAGATGATTGATGAAATTTTCATTAACTACACGACTGAGATCTTGAGCATGAGGCTAGAGATTACCATGTGCACACTGGTTAGATTCCGTTGTTGACGTTGAGTGTACTTCGTAACAACGATGTTGTCGTGAGTGCTCGGCGGGCTCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGTGCTTGTAAACATTGTTGTACTGGGTGTACCCTACACAACGTAGATTTGTCATGTTAGTTAAAATTCTTCGATATACTTGATATGCCTTGCTAGATTTCAATGATGAACATGCTGGGTATTTAAAGAAGCTATTCTTACTACTACACATTTACATTTACGACTTGTATAAACAGATTTATATGTGTAAAGTTTTCACGTGCTCTTATCTTTAAATTCATAGTTTTAAACTGAGTCACTCACTGAGCTTCATAGCTCACCCTTTCCAAAATGTTTTACCCATTTTCCAGGTAGAGATCGAGTTCTCGGTGCCTGATAGACTGCCTTAGTCTGCTGAAGCTCCATTATCGATTGCCAGTACGTGTTTTGAGTTGGGCATAGAGTCTGTTGTATTGTGATGTATATACACCCTTGTATGTTATAGATACTCCACAGTTTGTATAAGCTTGAGGAGCTGTAGTTGTGTAAATTTTGTTGGTTATATTTTGATTAAGGTGTCTTTAGGTTTACTCGTGAAATTGGTAAATTTTGAGGTACACTTCATGTATGTGTTTGACTAGCCTAGGATCCGCTGTGTTTTGTTGCATGTATAACAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAATTACAGAAAAACGTTGTTCGTCGGCTTCATGCCATCTTTCGATCTAAGGTAGCAGGTAGTCTAGGAGGAGGTGTGACACCAGATACCTTTCCAAGCTTGCATTAAGAACAAAGGGTTACAAGTTGTGACAAAAGTAAGTTAGATTGCCTATTCCTAGCATTTTATTCACTATAAATTCTATTTAGTTCATGGAGGTATAATCAAGAAACTTGTTCTAGAACATACAACCAATTTCTAACCATGCTTCTTAGTCATTCTTGAAAGCTAAATGAATAAGCAAACAAGATACACTCGTTATTTGTGAAAGCAATCAAAATGCATCTCATTAAATAGACAATCGAAGGTAGATGTTTATCACATAAAATCGAACAATAAATACAATCCTAAAAGAAATCCACAACCTAAAATCCCAACTCCAAGTTGGAAGTACCTTAGTCACTAATATGAATGGGGATAATTGAAGAGGGGGATAAATAGAGAAGAAATGTAAAGAATTTAGGTGGAGCCTGCAAAAAGATAGGATCTCTTTTGACCTAGAAATCCGTGCACATTATATAGAATTGAGGCTAGTATAGCTGCACTTGAGCTCTAGTTATTAATGTCGTAGAATAACAGTGTTGTGTGTTGCGCTTTAAAGATCATGTTGGAAAAAAACAAACATTGATCATCGTTGTTGTGCCGTGTCGAACCACTACCTCGAAAGCAAAATTCGGCGCGACCTCGGTGCTAAATCGCATATGCCGGGTTGCTTCCTAA

mRNA sequence

TGCTGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCTCTGGAAGAAATCATGAACCCAAAACGACTAAAAATCAGTTAAATTGTAGGGACAAGTTAAAGAGGTCGTGTGCGTATGATTCTGGAAGTGGTTCTGTTTCGAGGGTTATCGGAGTTTATGCACGGGGAATCAGATTTATATATCTTCAGATGATTGATGAAATTTTCATTAACTACACGACTGAGATCTTGAGCATGAGGCTAGAGATTACCATGTGCACACTGGTGTCTTTAGGTTTACTCGTGAAATTGTGTTGTGTGTTGCGCTTTAAAGATCATGTTGGAAAAAAACAAACATTGATCATCGTTGTTGTGCCGTGTCGAACCACTACCTCGAAAGCAAAATTCGGCGCGACCTCGGTGCTAAATCGCATATGCCGGGTTGCTTCCTAA

Coding sequence (CDS)

CTGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCTCTGGAAGAAATCATGAACCCAAAACGACTAAAAATCAGTTAAATTGTAGGGACAAGTTAAAGAGGTCGTGTGCGTATGATTCTGGAAGTGGTTCTGTTTCGAGGGTTATCGGAGTTTATGCACGGGGAATCAGATTTATATATCTTCAGATGATTGATGAAATTTTCATTAACTACACGACTGAGATCTTGAGCATGAGGCTAGAGATTACCATGTGCACACTGGTGTCTTTAGGTTTACTCGTGAAATTGTGTTGTGTGTTGCGCTTTAAAGATCATGTTGGAAAAAAACAAACATTGATCATCGTTGTTGTGCCGTGTCGAACCACTACCTCGAAAGCAAAATTCGGCGCGACCTCGGTGCTAAATCGCATATGCCGGGTTGCTTCCTAA

Protein sequence

LKKTGQLVFTRNQEVSGRNHEPKTTKNQLNCRDKLKRSCAYDSGSGSVSRVIGVYARGIRFIYLQMIDEIFINYTTEILSMRLEITMCTLVSLGLLVKLCCVLRFKDHVGKKQTLIIVVVPCRTTTSKAKFGATSVLNRICRVAS
Homology
[Close]
BLAST of MELO3C034357 vs. NCBI nr
Match: KAA0042134.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-11
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 0 

Query: 1  LKKTGQLVFTRNQEVSGRNHEPKTTKN-QLNCRDKLKRSCAYDSGSGSVSRVIGVYARGI 60
          +KKTGQLVFTRNQEVSG +   +     +++  DKLKRSCA+DSGSGSV RVI VYARGI
Sbjct: 1  MKKTGQLVFTRNQEVSGSSCISECIGGVRISIWDKLKRSCAHDSGSGSVLRVICVYARGI 60

Query: 61 RFIYLQMIDEIFINYTTEILSMRLEITMCTLVSLGLLVK 99
          RFI LQ+           +L++ +      +VSLG LVK
Sbjct: 61 RFICLQI----------PLLTLSVLRNNDAVVSLGFLVK 89

[Close]
BLAST of MELO3C034357 vs. NCBI nr
Match: KAA0056684.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 5.6e-10
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 0 

Query: 1   LKKTGQLVFTRNQEVSGRNHEPKTTKN-QLNCRDKLKRSCAYDSGSGSVSRVIGVYARGI 60
           +KKTGQLVFTRNQEVSG +   +     +++  +KLKRSCA DSGSGSV RVI VYARGI
Sbjct: 104 MKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGI 163

Query: 61  RFIYLQM 67
           RFI LQ+
Sbjct: 164 RFICLQI 170

[Close]
BLAST of MELO3C034357 vs. NCBI nr
Match: KAA0032946.1 (uncharacterized protein E6C27_scaffold269G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-09
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 1   LKKTGQLVFTRNQEVSGRNHEPKTTKN-QLNCRDKLKRSCAYDSGSGSVSRVIGVYARGI 60
           + KTGQLVFTRNQEVSG     +     +++  +KLKRSCA DSGSGSV RVI +YARGI
Sbjct: 233 IDKTGQLVFTRNQEVSGFACISECISGVRISIWNKLKRSCARDSGSGSVLRVICIYARGI 292

Query: 61  RFIYLQM 67
           RFI LQ+
Sbjct: 293 RFICLQI 299

[Close]
BLAST of MELO3C034357 vs. NCBI nr
Match: KAA0043123.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 1   LKKTGQLVFTRNQEVSGRNHEPKTTKN-QLNCRDKLKRSCAYDSGSGSVSRVIGVYARGI 60
           L+  GQLVFTRNQEVSG +   +     +++  +KLKRSCA DSGSGSV RVI VYARGI
Sbjct: 613 LQTAGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGI 672

Query: 61  RFIYLQM 67
           RFI LQ+
Sbjct: 673 RFICLQI 679

[Close]
BLAST of MELO3C034357 vs. NCBI nr
Match: KAA0035073.1 (uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 53/107 (49.53%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 6   QLVFTRNQEVSGRNHEPKTTKN-QLNCRDKLKRSCAYDSGSGSVSRVIGVYARGIRFIYL 65
           QLVFTRNQEVSG +   +     +++  +KLKRSCA DSGSGSV RVI VYARGIRFI L
Sbjct: 67  QLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGIRFICL 126

Query: 66  QM-------------IDEIFINYTTEILSMRLEITMCTLVSLGLLVK 99
           Q+             + EI      + LS+R ++     VSLGLLVK
Sbjct: 127 QIPLLTLSVLRNNDAVVEIDFPVPVDCLSLR-KLHYRLPVSLGLLVK 172

[Close]
BLAST of MELO3C034357 vs. ExPASy TrEMBL
Match: A0A5A7TFC5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006220 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 0 

Query: 1  LKKTGQLVFTRNQEVSGRNHEPKTTKN-QLNCRDKLKRSCAYDSGSGSVSRVIGVYARGI 60
          +KKTGQLVFTRNQEVSG +   +     +++  DKLKRSCA+DSGSGSV RVI VYARGI
Sbjct: 1  MKKTGQLVFTRNQEVSGSSCISECIGGVRISIWDKLKRSCAHDSGSGSVLRVICVYARGI 60

Query: 61 RFIYLQMIDEIFINYTTEILSMRLEITMCTLVSLGLLVK 99
          RFI LQ+           +L++ +      +VSLG LVK
Sbjct: 61 RFICLQI----------PLLTLSVLRNNDAVVSLGFLVK 89

[Close]
BLAST of MELO3C034357 vs. ExPASy TrEMBL
Match: A0A5A7UNA3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00100 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 0 

Query: 1   LKKTGQLVFTRNQEVSGRNHEPKTTKN-QLNCRDKLKRSCAYDSGSGSVSRVIGVYARGI 60
           +KKTGQLVFTRNQEVSG +   +     +++  +KLKRSCA DSGSGSV RVI VYARGI
Sbjct: 104 MKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGI 163

Query: 61  RFIYLQM 67
           RFI LQ+
Sbjct: 164 RFICLQI 170

[Close]
BLAST of MELO3C034357 vs. ExPASy TrEMBL
Match: A0A5A7SSI1 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00200 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.3e-09
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 1   LKKTGQLVFTRNQEVSGRNHEPKTTKN-QLNCRDKLKRSCAYDSGSGSVSRVIGVYARGI 60
           + KTGQLVFTRNQEVSG     +     +++  +KLKRSCA DSGSGSV RVI +YARGI
Sbjct: 233 IDKTGQLVFTRNQEVSGFACISECISGVRISIWNKLKRSCARDSGSGSVLRVICIYARGI 292

Query: 61  RFIYLQM 67
           RFI LQ+
Sbjct: 293 RFICLQI 299

[Close]
BLAST of MELO3C034357 vs. ExPASy TrEMBL
Match: A0A5A7TIE3 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold332G00080 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.7e-09
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 1   LKKTGQLVFTRNQEVSGRNHEPKTTKN-QLNCRDKLKRSCAYDSGSGSVSRVIGVYARGI 60
           L+  GQLVFTRNQEVSG +   +     +++  +KLKRSCA DSGSGSV RVI VYARGI
Sbjct: 613 LQTAGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGI 672

Query: 61  RFIYLQM 67
           RFI LQ+
Sbjct: 673 RFICLQI 679

[Close]
BLAST of MELO3C034357 vs. ExPASy TrEMBL
Match: A0A5A7SX02 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001380 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.3e-08
Identity = 53/107 (49.53%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 6   QLVFTRNQEVSGRNHEPKTTKN-QLNCRDKLKRSCAYDSGSGSVSRVIGVYARGIRFIYL 65
           QLVFTRNQEVSG +   +     +++  +KLKRSCA DSGSGSV RVI VYARGIRFI L
Sbjct: 67  QLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGIRFICL 126

Query: 66  QM-------------IDEIFINYTTEILSMRLEITMCTLVSLGLLVK 99
           Q+             + EI      + LS+R ++     VSLGLLVK
Sbjct: 127 QIPLLTLSVLRNNDAVVEIDFPVPVDCLSLR-KLHYRLPVSLGLLVK 172

The following BLAST results are available for this feature:
BLAST of MELO3C034357 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042134.13.0e-1153.54DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0056684.15.6e-1065.67DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0032946.14.7e-0962.69uncharacterized protein E6C27_scaffold269G00200 [Cucumis melo var. makuwa][more]
KAA0043123.11.8e-0862.69transposase [Cucumis melo var. makuwa][more]
KAA0035073.11.5e-0749.53uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa][more]
BLAST of MELO3C034357 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034357 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TFC51.4e-1153.54Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5A7UNA32.7e-1065.67Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73... [more]
A0A5A7SSI12.3e-0962.69Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7TIE38.7e-0962.69Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold332G00080 PE... [more]
A0A5A7SX027.3e-0849.53CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
BLAST of MELO3C034357 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034357.1MELO3C034357.1mRNA