MELO3C034345 (gene) Melon (DHL92) v4

Overview
NameMELO3C034345
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCCHC-type domain-containing protein
Locationchr10: 10580666 .. 10582623 (+)
RNA-Seq ExpressionMELO3C034345
SyntenyMELO3C034345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAACGTTGGAGCAAATTCGGATATTCATTTGGTGCTTTTTGATGAAGAAAACAGGGCAATTGGTTTTCACTCGAAATTAGGAGGTCTCTGGTTTTTCTTGTATTTCAGAGTGTACCGGTGGAGTTAGAATCTTTATTTGGTATGGTTGGAAATTTTATTCAATTTACTACAACTTTCATGAAGAAATTGTGAACCAAAAATGACTAAAAATCAGTTAAATTATAGGGACAAGTTAAAGAGGTCGTGTGCGCGCGATTCTGGAAGTGGTTCTATTTTGAGGGTTATCTGAGTTTATGCACGGGGAATCAGATTTATATGTCTTCAGGTAAGTTTTAGAGGATCTCAAAATGAAGAGTTTGATATAAAGAACACTCATTTTGGTTAAGTATTGAGAAAGTTATAGTCCTTTGAAGTTTATGTTAGAAATCTGGAAATTTCAGAGAATTGTTGAAATAGGATTTTATTTCTTAAGCTTTGTTTTCGTGAGCGTCATCTTTAGTGCGACATGTTATGTATATCTTTAGGAAACAAGAATGTTTAGAGTTTTAATACTCGGTTGGGTTGTTGGCAGACCGAGAAGAATTAAACCGAGCTTATAGACCAAGGATCTAGCCCAAGACTGTGAGTGACAAAACCAACTTTGAAATATTTTCCATAACTGTTATTATGATTAAATGTGATAAATGTTTATTTACGAAGCCATGAAAGGTATTTGAATTTCATGACTATTTTCAAGTATACATTTGGAGACTAGATTTCTTAAAGAAATTTATGCTAGCACGTAGATATTAAATGTTTGGAAAGTATTTAAACCACAATATTTTAAGCAAAGCATGAATTAGTATGAAGTTTTGTTTTAAGAACTACAATTTTTCACGAAAGAGCTGAGTAAAGTTCGAGCTTTGTGTAAAATTTATAAGCAGACATATTTTAATATTTTTAGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTATCGTGTGCACACTGGTTAGATTCCGTTGTTAACGTTGAGTGTGCTCCGTAACAATGATGTTGTCGTGAGTGCTAGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGACCCCATTACATCGTAGTGCTTGTAAACGTTGTTGTACTGGGTGTACCCTACACAACGTAGATTTGTCATGTTAGTTAAAATGCTTCGATATATTTAATATGTCTTGCTAGATTTCAATGATGAACATGCTGAGTATTTAAGGAAGTTATTCTTACTACTACACATTTACATTTACGACTTGTATAAACAGATTTACATGTGTAAAGTTTTCACGTGCTCTTATCTTTAAATTCATAGTTTTAAACTGAGTCACTCACTGAGCTTCATAGCTCACCCTTTCCAAAATGTTTTACCCATTTTCCAGGTAAAGATCGAGTTCCCGGTGCCTGATAGACTGTCTTAGTCTGCTGAAGCTTCATTATCGATTGCCAGTGCGTGTTTTGAGTTGGGCATAGAGTCTGTTGTGTTGTGATGTATATACACCCTTGTATGTTATAGATACTCCACAGTTTGTATAAGCTTTAGGAGCTGTAGTTGTGTAAATTTTGTTGGTTATATTTTGATTAAGGTGTCTTTAGGTTTACTCGTGAAATCGGTAAATTTTGAGGTACACTTCATGTATGTGTTTGACTAGCTGTGTTTGACTAGCCTAGGATCCGCTGTGTTTTGTTGCATGTAAAATAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCAGGAGGGGGTGTGACAAGCAAGGAGCTTGCATATTTAAAAGCCTCATCAGTCTTCGAAATCTTCTTATTAAAAAGATATAAATAA

mRNA sequence

ATGAATAACGTTGGAGCAAATTCGGATATTCATTTGGTGCTTTTTGATGAAGAAAACAGGGCAATTGGTTTTCACTCGAAATTAGGAGAGTGTACCGGTGGAGTTAGAATCTTTATTTGGTATGGTTGGAAATTTTATTCAATTTACTACAACTTTCATGAAGAAATTGGACAAGTTAAAGAGGTCGTGTGCGCGCGATTCTGGAAGTGGTTCTATTTTGAGGGTTATCTGAGTTTATGCACGGGGAATCAGATTTATATGTCTTCAGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGACCCCATTACATCGTAGTGCTTGTAAACGTTGTTGTACTGGGTGTACCCTACACAACGTGTCTTTAGGTTTACTCGTGAAATCGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCAGGAGGGGGTGTGACAAGCAAGGAGCTTGCATATTTAAAAGCCTCATCAGTCTTCGAAATCTTCTTATTAAAAAGATATAAATAA

Coding sequence (CDS)

ATGAATAACGTTGGAGCAAATTCGGATATTCATTTGGTGCTTTTTGATGAAGAAAACAGGGCAATTGGTTTTCACTCGAAATTAGGAGAGTGTACCGGTGGAGTTAGAATCTTTATTTGGTATGGTTGGAAATTTTATTCAATTTACTACAACTTTCATGAAGAAATTGGACAAGTTAAAGAGGTCGTGTGCGCGCGATTCTGGAAGTGGTTCTATTTTGAGGGTTATCTGAGTTTATGCACGGGGAATCAGATTTATATGTCTTCAGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGACCCCATTACATCGTAGTGCTTGTAAACGTTGTTGTACTGGGTGTACCCTACACAACGTGTCTTTAGGTTTACTCGTGAAATCGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCAGGAGGGGGTGTGACAAGCAAGGAGCTTGCATATTTAAAAGCCTCATCAGTCTTCGAAATCTTCTTATTAAAAAGATATAAATAA

Protein sequence

MNNVGANSDIHLVLFDEENRAIGFHSKLGECTGGVRIFIWYGWKFYSIYYNFHEEIGQVKEVVCARFWKWFYFEGYLSLCTGNQIYMSSGGPHYDKDDGSAGRTPLHRSACKRCCTGCTLHNVSLGLLVKSSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVTSKELAYLKASSVFEIFLLKRYK
Homology
[Close]
BLAST of MELO3C034345 vs. NCBI nr
Match: KAA0035470.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 7.3e-07
Identity = 39/93 (41.94%), Postives = 49/93 (52.69%), Query Frame = 0 

Query: 13  VLFDEENRAIGFHSKLGECTGGVRIFIWYGWKFYSIYYNFHEEIGQVKEVVCARFWKWFY 72
           ++F    +  GF S + ECT  VRI IW                 ++K    + FWK FY
Sbjct: 176 LVFTRNQKVSGF-SCISECTDRVRISIW----------------DKLKGSCASEFWKLFY 235

Query: 73  FEGYLSLCTGNQIYMSSGGPHYDK--DDGSAGR 104
           FEGYLSL TGNQIYMSSG    ++  D GS+ R
Sbjct: 236 FEGYLSLFTGNQIYMSSGREELNELIDQGSSPR 251

[Close]
BLAST of MELO3C034345 vs. ExPASy TrEMBL
Match: A0A5A7STG0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold500G00030 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 0 

Query: 77  LSLCTGNQIYMSSGGPHYDKDDGSAGRTPLHRSA---CKRCCTGCTLHNVSLGLLVKSSR 136
           LS+   N   ++   PHYDKDDGS GR PLHR +   C+      TLH          SR
Sbjct: 527 LSVLHNNDAVVNVRRPHYDKDDGSIGRVPLHRVSKFTCEISYFQATLH----------SR 586

Query: 137 QIQVQKSVVRRLHAIFRSKVAGSPGGGVTSKELAYLK 171
           QI +++S V RLHA+FRSK+ GS G  VT+  ++++K
Sbjct: 587 QISIKESDVDRLHAVFRSKLVGSSGVVVTACNVSFIK 613

[Close]
BLAST of MELO3C034345 vs. ExPASy TrEMBL
Match: A0A5A7TLX3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00470 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.8e-09
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 123 VSLGLLVKS----SRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT 163
           VSLGLLVKS    SRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT
Sbjct: 255 VSLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT 298

[Close]
BLAST of MELO3C034345 vs. ExPASy TrEMBL
Match: A0A5A7TFC5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006220 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-08
Identity = 57/149 (38.26%), Postives = 68/149 (45.64%), Query Frame = 0 

Query: 19  NRAIGFHSKLGECTGGVRIFIWYGWKFYSIYYNFHEEIGQVKEVVCARFWKWFYFEGYLS 78
           N+ +   S + EC GGVRI IW   K    +       G V  V+C       Y  G   
Sbjct: 12  NQEVSGSSCISECIGGVRISIWDKLKRSCAH---DSGSGSVLRVICV------YARGIRF 71

Query: 79  LCTGNQIYMSSGGPHYDKDDGSAGRTPLHRSACKRCCTGCTLHN----VSLGLLVKSSRQ 138
           +C                      + PL         T   L N    VSLG LVKS   
Sbjct: 72  ICL---------------------QIPL--------LTLSVLRNNDAVVSLGFLVKSV-N 121

Query: 139 IQVQKSVVRRLHAIFRSKVAGSPGGGVTS 164
           ++VQKSVVR+LHAIFRSKVAGSPGGGVT+
Sbjct: 132 LEVQKSVVRQLHAIFRSKVAGSPGGGVTT 121

[Close]
BLAST of MELO3C034345 vs. ExPASy TrEMBL
Match: A0A5A7SWQ7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001170 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 121 HNVSLGLLVKS----SRQIQVQKSVVRRLHAIFRSKVAGSPGGGVTSKEL 167
           H VSLGLLVKS    SRQIQVQKSVV  LHAIFRSKVAGSP GGVT  ++
Sbjct: 467 HKVSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVAGSPEGGVTKTQV 516

[Close]
BLAST of MELO3C034345 vs. ExPASy TrEMBL
Match: A0A5A7SWQ7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001170 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 39/93 (41.94%), Postives = 49/93 (52.69%), Query Frame = 0 

Query: 13  VLFDEENRAIGFHSKLGECTGGVRIFIWYGWKFYSIYYNFHEEIGQVKEVVCARFWKWFY 72
           ++F    +  GF S + ECT  VRI IW                 ++K    + FWK FY
Sbjct: 176 LVFTRNQKVSGF-SCISECTDRVRISIW----------------DKLKGSCASEFWKLFY 235

Query: 73  FEGYLSLCTGNQIYMSSGGPHYDK--DDGSAGR 104
           FEGYLSL TGNQIYMSSG    ++  D GS+ R
Sbjct: 236 FEGYLSLFTGNQIYMSSGREELNELIDQGSSPR 251


HSP 2 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 121 HNVSLGLLVKS----SRQIQVQKSVVRRLHAIFRSKVAGSPGGGVTSKEL 167
           H VSLGLLVKS    SRQIQVQKSVV  LHAIFRSKVAGSP GGVT  ++
Sbjct: 90  HKVSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVAGSPEGGVTKTQV 139

The following BLAST results are available for this feature:
BLAST of MELO3C034345 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035470.17.3e-0741.94gag/pol protein [Cucumis melo var. makuwa][more]

Pages

BLAST of MELO3C034345 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034345 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7STG02.9e-0943.30DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7TLX33.8e-0990.91Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TFC54.2e-0838.26Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5A7SWQ75.5e-0876.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G0011... [more]
A0A5A7SWQ73.5e-0741.94Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G0011... [more]
BLAST of MELO3C034345 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034345.1MELO3C034345.1mRNA