MELO3C034331 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034331
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag-protease polyprotein
Location	chr10: 9099587 .. 9101860 (+)
RNA-Seq Expression	MELO3C034331
Synteny	MELO3C034331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAATATAAGCATTGTTTGGATGACACTACTCATTCCATATAACAATATAAATTCACCTAACTAGAAAGAATTAAATTAGATCATCAAGTCCCATCTAATATTCCTTCCTTTTTCTTTAATTTGAATTTTTATGATCTTATCAGGCTACAAGGTATTTGTAACGCCCCAAATTTTTAAGGTATGTTCTCAACATATTTATCTTATGTTATGGAAATTTTATTTATTTTGTTAAGTGTTAAATTCTTTTGGGTTGGTGAGAACAAGGAAAAGAAAAGGCAAAAGAAAATATTTTGGGATAAAATGAAATAATATAATTATATTAATATTATTTAAAAAAACCGTTGCATGTGCAGCCCTCTATCGCCTTCTTCTTCTTCTTCATCGTGCGTAACCAGCCGCCAGCGTTCTCTCTCACGCCAACAGCCTCTTTCGTCTCCGTTCAACACCAACGTCACCGTATCTCTTCCTAGGTTGTCACCGTCAGCTTCACAACTCCGTCGGGCACCCTTTCGCAACCGCCGCCCGAACCCCTTTCTCCTTCTTATTGTTCCGTCGACCGCCATCGTCTCTATCCTCCTCCGTTCATCGATTTCAAGGCCCGACCGCTCGCTGTCATGACACATCCTCCATCCATCGAAGATGTCAAGATAGGAAGTCGTGGTTTCATCCTTTGCCCGAGCTGAGATCCTTCTTCGTTAGAGCCACCCGGTTGCCTCCCTTAGCCTGTGCGCCGAGCTGTCGTCCAAGCCAAGCCGCCAACCAACTTCCCCTTTCTTGCAGCCACTCGAGCCAGTTTGTGGTAAGATTGAAATTATGAGTTTTATAGTGTTTTCCCTAGTTCATTTAAGTATAGTAGTTGAAATAAAATATCGGATTAATTGGGTTCATTATCATGGTTTTCTTGAAGGTTTGGAAGTCGAATTCGTGGATTCTACGACGAACTTGTTTGGAGTTTGATTTTCCATTAGCTTGGGTAAGTGGTGGATCTTGTGAATTGGGAAATTTGATTGGACAACTTGCTTGATGTAGTATTGAAATTCCTTATGTTATGTTTAGGTTGGTTCATTGGATCTTAGTTTGGTTAAGGAGCATAGCCAAATCTAAGGTAAGGGTTCCTACTACAGGACTCAAATTCGAGATTTAAACATAATAAATTAAGCAAAAGTATATTTTTGAGGTTGCAATAAATTGATGTTTGTGTGCTCACATAAAAGTAGTATTGATACATTCTTGACTGGTTTTGAACGACACAATTGCTAAGTGTAGTTTGATTTACATCGATGGGTCGTGTTGTTGGCTTATTATTGATGACGAGGAATTGACTGTTATTCATGACTTGGGTTATAGTTGGTCTGTGCTGTCATTGGCTGGTGTTATCTGGGTCCTCTTTGTAATCTATGCATACTGTTGAGCTGTGTTGTTCATGGGTGATGGATTTCAGAACCGCCATGCGTAGTTTGTATATTTACTGATGGGTTGTACTCTAAACTAAATTAGACGTTATGTTTAGTATAGGTTACTTGTAGTTTGTGTTAGTGTTTGGGCTGAGGCAATGTGATTGCCAGTGTAACTACACGATGATGAGTTGACTTACTGATTGAACTTAAATTGCCTGACTGATTATACTTAGAGACTGGACTGTTAATTGAGATTGTTACGTTTTCATTGTTGTAGGCTGTTTAGACTGGATTGAGGAATAACTGTTAGCTTTATCTATGGGGTAATGTACCTTGCAGGCACGGTGTCCTATAGGATCACCACATGTTGTGCATCCTTCGGGATCACTAGACTAATGTGTATATCCAACGGGAACACTAGACTGATATGTATATCCGACGGGATTACTAGATTGATATGTGTGTCCTTCGAGATTACTAGACTGATTGATGTGTGCGTCTTACGATACCACAAGACTGTTCTGTGCAGGGTACCCATTAATAAGAAGCTAATGGCTATTGCCTTATCGAGGCCAGTAGTGAGTCTCTTACTGAGTATATTTCATACTCACCCTTTTATGTTTAACTTTTTTTTTTTTTTCAGATAAAGGTAATGTACGAGGCTGACCGACGAGGGGCAAGAAGGATACGTGAAGGCCATATGGAGATGTTTAGGTTAATGCTTCCGCTCAATGTCTTTATTGTTCCGTTTGAGGATTTTTGTCTTGAGTTTTGGTTAGAAACTTTGTTCATTTATTTTATTTGAAATTCTATAAACGGCGTTTGAAACTTTTAAAATTTATTTGAAATAGGGCCCGAAGAAAATTTTATTACA

mRNA sequence

TAATAATATAAGCATTGTTTGGATGACACTACTCATTCCATATAACAATATAAATTCACCTAACTAGAAAGAATTAAATTAGATCATCAAGTCCCATCTAATATTCCTTCCTTTTTCTTTAATTTGAATTTTTATGATCTTATCAGGCTACAAGGTATTTGTAACGCCCCAAATTTTTAAGCCCTCTATCGCCTTCTTCTTCTTCTTCATCGTGCGTAACCAGCCGCCAGCGTTCTCTCTCACGCCAACAGCCTCTTTCGTCTCCGTTCAACACCAACGTCACCGTATCTCTTCCTAGGTTGTCACCGTCAGCTTCACAACTCCGTCGGGCACCCTTTCGCAACCGCCGCCCGAACCCCTTTCTCCTTCTTATTGTTCCGTCGACCGCCATCGTCTCTATCCTCCTCCGTTCATCGATTTCAAGGCCCGACCGCTCGCTGTCATGACACATCCTCCATCCATCGAAGATGTCAAGATAGGAAGTCGTGGTTTCATCCTTTGCCCGAGCTGAGATCCTTCTTCGTTAGAGCCACCCGGTTGCCTCCCTTAGCCTGTGCGCCGAGCTGTCGTCCAAGCCAAGCCGCCAACCAACTTCCCCTTTCTTGCAGCCACTCGAGCCAGTTTGTGGTTTGGAAGTCGAATTCGTGGATTCTACGACGAACTTGTTTGGAGTTTGATTTTCCATTAGCTTGGGTTGGTTCATTGGATCTTAGTTTGGTTAAGGAGCATAGCCAAATCTAAGATAAAGGTAATGTACGAGGCTGACCGACGAGGGGCAAGAAGGATACGTGAAGGCCATATGGAGATGTTTAGGTTAATGCTTCCGCTCAATGTCTTTATTGTTCCGTTTGAGGATTTTTGTCTTGAGTTTTGGTTAGAAACTTTGTTCATTTATTTTATTTGAAATTCTATAAACGGCGTTTGAAACTTTTAAAATTTATTTGAAATAGGGCCCGAAGAAAATTTTATTACA

Coding sequence (CDS)

ATGATCTTATCAGGCTACAAGGTATTTGTAACGCCCCAAATTTTTAAGCCCTCTATCGCCTTCTTCTTCTTCTTCATCGTGCGTAACCAGCCGCCAGCGTTCTCTCTCACGCCAACAGCCTCTTTCGTCTCCGTTCAACACCAACGTCACCGTATCTCTTCCTAG

Protein sequence

MILSGYKVFVTPQIFKPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQRHRISS

Homology

[Close]

BLAST of MELO3C034331 vs. NCBI nr
Match: KAA0037406.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 39/48 (81.25%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MILSGYKVFVTPQIFKPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ 49
          MILSGY         KPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ
Sbjct: 1  MILSGY---------KPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ 39

[Close]

BLAST of MELO3C034331 vs. NCBI nr
Match: TYJ97506.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 39/48 (81.25%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MILSGYKVFVTPQIFKPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ 49
          MILSGY         KPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ
Sbjct: 1  MILSGY---------KPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ 39

[Close]

BLAST of MELO3C034331 vs. ExPASy TrEMBL
Match: A0A5A7T5I3 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G001180 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.5e-10
Identity = 39/48 (81.25%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MILSGYKVFVTPQIFKPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ 49
          MILSGY         KPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ
Sbjct: 1  MILSGY---------KPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ 39

[Close]

BLAST of MELO3C034331 vs. ExPASy TrEMBL
Match: A0A5D3BEN2 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00110 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.5e-10
Identity = 39/48 (81.25%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MILSGYKVFVTPQIFKPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ 49
          MILSGY         KPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ
Sbjct: 1  MILSGY---------KPSIAFFFFFIVRNQPPAFSLTPTASFVSVQHQ 39

The following BLAST results are available for this feature:

BLAST of MELO3C034331 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037406.1	1.8e-09	81.25	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]
TYJ97506.1	1.8e-09	81.25	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034331 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5I3	8.5e-10	81.25	Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BEN2	8.5e-10	81.25	Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of MELO3C034331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034331.1	MELO3C034331.1	mRNA