MELO3C034330 (gene) Melon (DHL92) v4

Overview
NameMELO3C034330
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCOP9 signalosome complex subunit 5b-like
Locationchr10: 9063635 .. 9065118 (-)
RNA-Seq ExpressionMELO3C034330
SyntenyMELO3C034330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGTAACGTCACGTTGCTTCTTGTCACATGGGGTGTGATTCTCAGCTACTTTGTGGAAACCAAAGCTCTCAAAGTTGTTTAGAAGTAATATTTTGTGATAATTTTGACAGTTTTGGCAAATTTTCTCTACCACCAACAAGAAATTACTAACGGTAGTATTTGCATTTGAAGATAGGGATAGCTCTCTTAATCTTAAAATTAGCCAACTTATTTCGATCACAAAGCTTATAGAAGATGATGAAGGTAATGAATTGTATTTATATTATTTTCAAGTCTTCACTTGATTGACACCTCTTGGATTTACTTTGGAACAAGTACTAGGTTACGTTAATACACTTTCTTCTTCTCCTCTGTTGGGTAATGGAGATTACGTTGCTGTATAAATTTCAGATTTTAGGTATATCCTCATCTTCATTACAACGCATACTATTCAATATCTCCACCTGAATTTTATATGATTCTTTTTAGTTGTTTATTTTGTTCTTTGCAGCTGAAAAACTTGAGCAGTTGGAGAATCAGTTGGCTCACTCCCGCTTTGGGCCATTGATAGCTCCTTCTCAGAGGAAAAAGGAGGTGTGTTATGTCGTTTCTCTTATTCTTTCTTTTTTTATATATATTTTTTGGAGCATAAACAACTCTATCTGATACATGCACCTATATATTTCATAAGCTACAAAAAACAATATGTTATAATTTATATTGTAGATAGATAAGCATACTTTTTGTCCAAAGTGTTAGGCCATAAACCAGATATTATAGAAATGGAGTCCGGAAAGAAACAATTTGAGACCTTTCCATACAGATTCTGAGTGTTCATACTGGATATTTTAAAGTTTAATTTCACTTCTCATAAATTAAGCAAAGCAAATTATTGTGTTACTGGTTTGTATTGGTGATGCTAAGCATGTCCTTGTATACTTTACTGAGTTATGTTTATATTATTTTTTTTGTTGGTACTAAATTTATGTCTTGTTTCGACAGTGTCAAATTCACCTTGATATGTCCATTTGTTACGTGGTTAGCAAGAATTCTCTTCTTTGATGAATAACTCTCATAAGATTTCTCAAAAGAAAAAAATTGCATTTTTTAAGTGAGCTAGTTGCTCTAGCAATATTAATTTAGACATCCAGATGAACTCTTGTTCATATATAAGCGTAGTATTTTTTATAATTTCATCTTCCGTTTGCAGGAAGACTCCCAACTTGCTAAGATCACTCGCGACAATGCAAAGATAACAGGAGCATGTTCATGGTTTGATGTCACAAGTGAGACTCACGTTGTGGTAGCCATTTTGAAACTTTGTTAATAGGTTATTTGTTCATAGGTGAATTGTTCATATGAGGGGATGATAGGTGAATTGTTTATAAGAGTTGAATTGTTCTGAAACTCAGATGGAATCGTATATTGGTTTTGTAAATGATAGGAATATTTGTAAAGTTTTGGAAATGATATGGTGAAAGATTTTATATTTGATGAATA

mRNA sequence

ATGAATTGTAACGTCACGTTGCTTCTTGTCACATGGGGTGTGATTCTCAGCTACTTTGTGGAAACCAAAGCTCTCAAATTTTGGCAAATTTTCTCTACCACCAACAAGAAATTACTAACGGTAGTATTTGCATTTGAAGATAGGGATAGCTCTCTTAATCTTAAAATTAGCCAACTTATTTCGATCACAAAGCTTATAGAAGATGATGAAGCTGAAAAACTTGAGCAGTTGGAGAATCAGTTGGCTCACTCCCGCTTTGGGCCATTGATAGCTCCTTCTCAGAGGAAAAAGGAGTGTCAAATTCACCTTGATATGTCCATTTGTTACGTGGAAGACTCCCAACTTGCTAAGATCACTCGCGACAATGCAAAGATAACAGGAGCATGTTCATGGTTTGATGTCACAAGTGAGACTCACGTTGTGGTAGCCATTTTGAAACTTTGTTAATAGGTTATTTGTTCATAGGTGAATTGTTCATATGAGGGGATGATAGGTGAATTGTTTATAAGAGTTGAATTGTTCTGAAACTCAGATGGAATCGTATATTGGTTTTGTAAATGATAGGAATATTTGTAAAGTTTTGGAAATGATATGGTGAAAGATTTTATATTTGATGAATA

Coding sequence (CDS)

ATGAATTGTAACGTCACGTTGCTTCTTGTCACATGGGGTGTGATTCTCAGCTACTTTGTGGAAACCAAAGCTCTCAAATTTTGGCAAATTTTCTCTACCACCAACAAGAAATTACTAACGGTAGTATTTGCATTTGAAGATAGGGATAGCTCTCTTAATCTTAAAATTAGCCAACTTATTTCGATCACAAAGCTTATAGAAGATGATGAAGCTGAAAAACTTGAGCAGTTGGAGAATCAGTTGGCTCACTCCCGCTTTGGGCCATTGATAGCTCCTTCTCAGAGGAAAAAGGAGTGTCAAATTCACCTTGATATGTCCATTTGTTACGTGGAAGACTCCCAACTTGCTAAGATCACTCGCGACAATGCAAAGATAACAGGAGCATGTTCATGGTTTGATGTCACAAGTGAGACTCACGTTGTGGTAGCCATTTTGAAACTTTGTTAA

Protein sequence

MNCNVTLLLVTWGVILSYFVETKALKFWQIFSTTNKKLLTVVFAFEDRDSSLNLKISQLISITKLIEDDEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKITGACSWFDVTSETHVVVAILKLC
Homology
[Close]
BLAST of MELO3C034330 vs. NCBI nr
Match: XP_008463225.1 (PREDICTED: COP9 signalosome complex subunit 5b-like [Cucumis melo] >KAA0037403.1 COP9 signalosome complex subunit 5b-like [Cucumis melo var. makuwa] >TYJ97508.1 COP9 signalosome complex subunit 5b-like [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 6.3e-25
Identity = 66/78 (84.62%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 71  AEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKITGACS 130
           AEKLEQLENQLAHSRFGPLIAPSQRKKE            EDSQLAKITRDNAKITGACS
Sbjct: 13  AEKLEQLENQLAHSRFGPLIAPSQRKKE------------EDSQLAKITRDNAKITGACS 72

Query: 131 WFDVTSETHVVVAILKLC 149
           WFDVTSETHVVVAILKLC
Sbjct: 73  WFDVTSETHVVVAILKLC 78

[Close]
BLAST of MELO3C034330 vs. NCBI nr
Match: KAG6585421.1 (COP9 signalosome complex subunit 5b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-11
Identity = 44/58 (75.86%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQLENQLAHSRFGPLIAPSQRKKE            EDSQLAKITRD+AKIT
Sbjct: 254 DLAEKLEQLENQLAHSRFGPLIAPSQRKKE------------EDSQLAKITRDSAKIT 299

[Close]
BLAST of MELO3C034330 vs. NCBI nr
Match: XP_023538610.1 (COP9 signalosome complex subunit 5b-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-11
Identity = 44/58 (75.86%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQLENQLAHSRFGPLIAPSQRKKE            EDSQLAKITRD+AKIT
Sbjct: 281 DLAEKLEQLENQLAHSRFGPLIAPSQRKKE------------EDSQLAKITRDSAKIT 326

[Close]
BLAST of MELO3C034330 vs. NCBI nr
Match: KAG7020342.1 (COP9 signalosome complex subunit 5b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-11
Identity = 44/58 (75.86%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQLENQLAHSRFGPLIAPSQRKKE            EDSQLAKITRD+AKIT
Sbjct: 281 DLAEKLEQLENQLAHSRFGPLIAPSQRKKE------------EDSQLAKITRDSAKIT 326

[Close]
BLAST of MELO3C034330 vs. NCBI nr
Match: XP_023002395.1 (COP9 signalosome complex subunit 5b-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-11
Identity = 44/58 (75.86%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQLENQLAHSRFGPLIAPSQRKKE            EDSQLAKITRD+AKIT
Sbjct: 281 DLAEKLEQLENQLAHSRFGPLIAPSQRKKE------------EDSQLAKITRDSAKIT 326

[Close]
BLAST of MELO3C034330 vs. ExPASy Swiss-Prot
Match: Q8H936 (COP9 signalosome complex subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=CSN5 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.1e-07
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D A+KLEQ E QLAHSR+G ++ PSQRKKE            E+S LAK+TRD++KIT
Sbjct: 273 DLADKLEQAEGQLAHSRYG-MLMPSQRKKE-----------QEESPLAKVTRDSSKIT 318

[Close]
BLAST of MELO3C034330 vs. ExPASy Swiss-Prot
Match: Q8LAZ7 (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana OX=3702 GN=CSN5A PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 4.4e-05
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPS--QRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQ E+QLA+SR+G  IAP+  QR+KE            ++ QLAKITRD+AKIT
Sbjct: 272 DLAEKLEQAESQLANSRYGG-IAPAGHQRRKE------------DEPQLAKITRDSAKIT 318

[Close]
BLAST of MELO3C034330 vs. ExPASy Swiss-Prot
Match: Q9FVU9 (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana OX=3702 GN=CSN5B PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-04
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQ E+ L  SRFG ++  S  KK+            ++SQL KITRD+AKIT
Sbjct: 272 DLAEKLEQAESHLVQSRFGGVVPSSLHKKK-----------EDESQLTKITRDSAKIT 318

[Close]
BLAST of MELO3C034330 vs. ExPASy TrEMBL
Match: A0A5D3BH63 (COP9 signalosome complex subunit 5b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00150 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 66/78 (84.62%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 71  AEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKITGACS 130
           AEKLEQLENQLAHSRFGPLIAPSQRKKE            EDSQLAKITRDNAKITGACS
Sbjct: 13  AEKLEQLENQLAHSRFGPLIAPSQRKKE------------EDSQLAKITRDNAKITGACS 72

Query: 131 WFDVTSETHVVVAILKLC 149
           WFDVTSETHVVVAILKLC
Sbjct: 73  WFDVTSETHVVVAILKLC 78

[Close]
BLAST of MELO3C034330 vs. ExPASy TrEMBL
Match: A0A1S3CIP8 (COP9 signalosome complex subunit 5b-like OS=Cucumis melo OX=3656 GN=LOC103501431 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 66/78 (84.62%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 71  AEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKITGACS 130
           AEKLEQLENQLAHSRFGPLIAPSQRKKE            EDSQLAKITRDNAKITGACS
Sbjct: 13  AEKLEQLENQLAHSRFGPLIAPSQRKKE------------EDSQLAKITRDNAKITGACS 72

Query: 131 WFDVTSETHVVVAILKLC 149
           WFDVTSETHVVVAILKLC
Sbjct: 73  WFDVTSETHVVVAILKLC 78

[Close]
BLAST of MELO3C034330 vs. ExPASy TrEMBL
Match: A0A6J1KNT9 (COP9 signalosome complex subunit 5b-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496251 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 44/58 (75.86%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQLENQLAHSRFGPLIAPSQRKKE            EDSQLAKITRD+AKIT
Sbjct: 281 DLAEKLEQLENQLAHSRFGPLIAPSQRKKE------------EDSQLAKITRDSAKIT 326

[Close]
BLAST of MELO3C034330 vs. ExPASy TrEMBL
Match: A0A5A7V9Z7 (COP9 signalosome complex subunit 5b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003160 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.5e-11
Identity = 43/58 (74.14%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQ+ENQLAHSRFGPLIAPSQRKKE            EDSQLAKITRD+AKIT
Sbjct: 281 DLAEKLEQVENQLAHSRFGPLIAPSQRKKE------------EDSQLAKITRDSAKIT 326

[Close]
BLAST of MELO3C034330 vs. ExPASy TrEMBL
Match: A0A0A0LPC3 (MPN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G378560 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.5e-11
Identity = 43/58 (74.14%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQ+ENQLAHSRFGPLIAPSQRKKE            EDSQLAKITRD+AKIT
Sbjct: 281 DLAEKLEQVENQLAHSRFGPLIAPSQRKKE------------EDSQLAKITRDSAKIT 326

[Close]
BLAST of MELO3C034330 vs. TAIR 10
Match: AT1G22920.1 (COP9 signalosome 5A )

HSP 1 Score: 49.3 bits (116), Expect = 3.1e-06
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPS--QRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQ E+QLA+SR+G  IAP+  QR+KE            ++ QLAKITRD+AKIT
Sbjct: 272 DLAEKLEQAESQLANSRYGG-IAPAGHQRRKE------------DEPQLAKITRDSAKIT 318

[Close]
BLAST of MELO3C034330 vs. TAIR 10
Match: AT1G22920.2 (COP9 signalosome 5A )

HSP 1 Score: 49.3 bits (116), Expect = 3.1e-06
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPS--QRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQ E+QLA+SR+G  IAP+  QR+KE            ++ QLAKITRD+AKIT
Sbjct: 272 DLAEKLEQAESQLANSRYGG-IAPAGHQRRKE------------DEPQLAKITRDSAKIT 318

[Close]
BLAST of MELO3C034330 vs. TAIR 10
Match: AT1G71230.1 (COP9-signalosome 5B )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 69  DEAEKLEQLENQLAHSRFGPLIAPSQRKKECQIHLDMSICYVEDSQLAKITRDNAKIT 127
           D AEKLEQ E+ L  SRFG ++  S  KK+            ++SQL KITRD+AKIT
Sbjct: 272 DLAEKLEQAESHLVQSRFGGVVPSSLHKKK-----------EDESQLTKITRDSAKIT 318

The following BLAST results are available for this feature:
BLAST of MELO3C034330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008463225.16.3e-2584.62PREDICTED: COP9 signalosome complex subunit 5b-like [Cucumis melo] >KAA0037403.1... [more]
KAG6585421.15.1e-1175.86COP9 signalosome complex subunit 5b, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_023538610.15.1e-1175.86COP9 signalosome complex subunit 5b-like isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG7020342.15.1e-1175.86COP9 signalosome complex subunit 5b [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023002395.15.1e-1175.86COP9 signalosome complex subunit 5b-like isoform X1 [Cucurbita maxima][more]
BLAST of MELO3C034330 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8H9366.1e-0755.17COP9 signalosome complex subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=C... [more]
Q8LAZ74.4e-0555.00COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana OX=3702 GN=CSN5A PE=... [more]
Q9FVU91.7e-0448.28COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana OX=3702 GN=CSN5B PE=... [more]
BLAST of MELO3C034330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BH633.0e-2584.62COP9 signalosome complex subunit 5b-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3CIP83.0e-2584.62COP9 signalosome complex subunit 5b-like OS=Cucumis melo OX=3656 GN=LOC103501431... [more]
A0A6J1KNT92.5e-1175.86COP9 signalosome complex subunit 5b-like isoform X1 OS=Cucurbita maxima OX=3661 ... [more]
A0A5A7V9Z75.5e-1174.14COP9 signalosome complex subunit 5b-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A0A0LPC35.5e-1174.14MPN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G378560 PE=3 SV... [more]
BLAST of MELO3C034330 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G22920.13.1e-0655.00COP9 signalosome 5A [more]
AT1G22920.23.1e-0655.00COP9 signalosome 5A [more]
AT1G71230.11.2e-0548.28COP9-signalosome 5B [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034330.1MELO3C034330.1mRNA