MELO3C034326 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034326
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr10: 8654223 .. 8654714 (-)
RNA-Seq Expression	MELO3C034326
Synteny	MELO3C034326

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATCACCCCTAGAGCAGAGAAACCTATTTCCCTATATGCCATTCGATTCAGCCAGGCGATAAGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGCCTTAAGTGACAGACATTGGCAGAGAATATATTGAGGTCGTCAAGGGCGACCTCCAGGTAATTATGTCCACTACATATTTATGATTTCATTTGAAATATATCTAAGTTAACCAATCTAATGTGTTATTTTTGTAATGTGTAGCGGTTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATTAAATGCTTACCACCTTCAAGGAGTTTTCGGATGACTGTTACAGATACTTTAAAAAGTACAGCGACCCTGAGGAGGCTCATGCTAACCCATCAAACATATTGGTTGGACGTCATGAGGATTGACACTTCCTCTGCGACCACTACATGAGCCGTGCATTCTAGGTATTTGTCATGCTTAATTATGATTTCAACTTT

mRNA sequence

ATGACGATCACCCCTAGAGCAGAGAAACCTATTTCCCTATATGCCATTCGATTCAGCCAGGCGATAAGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGCCTTAACCAATCTAATGTGTTATTTTTGTAATGTGTAGCGGTTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATTAAATGCTTACCACCTTCAAGGAGTTTTCGGATGACTGTTACAGATACTTTAAAAAGTACAGCGACCCTGAGGAGGCTCATGCTAACCCATCAAACATATTGGTTGGACGTCATGAGGATTGACACTTCCTCTGCGACCACTACATGAGCCGTGCATTCTAGGTATTTGTCATGCTTAATTATGATTTCAACTTT

Coding sequence (CDS)

ATGACGATCACCCCTAGAGCAGAGAAACCTATTTCCCTATATGCCATTCGATTCAGCCAGGCGATAAGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGCCTTAACCAATCTAATGTGTTATTTTTGTAA

Protein sequence

MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNVLFL

Homology

[Close]

BLAST of MELO3C034326 vs. NCBI nr
Match: KAA0032062.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 7.7e-08
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1  MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNV 41
          MTI PRAEKPIS +A+RFSQAI VCVRKTFPVRCL  ++V
Sbjct: 40 MTIAPRAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWADV 79

[Close]

BLAST of MELO3C034326 vs. NCBI nr
Match: KAA0048673.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK18171.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNV 41
           MTI PRAEKPIS +A+RFSQAI VCVRKTFPVRCL  +++
Sbjct: 64  MTIAPRAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWADI 103

[Close]

BLAST of MELO3C034326 vs. NCBI nr
Match: KAA0049620.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNV 41
           MTI P AEKPIS +A+RFSQAI VCVRKTFPVRCLN ++V
Sbjct: 63  MTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLNWTDV 102

[Close]

BLAST of MELO3C034326 vs. NCBI nr
Match: KAA0046834.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNV 41
           MTI P AEKPIS +A+RFSQAI VCVRKTFPVRCL  +NV
Sbjct: 324 MTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTNV 363

[Close]

BLAST of MELO3C034326 vs. NCBI nr
Match: TYK11883.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNV 41
          MTI P AEKPIS +A+RFSQAI VCVRKTFPVRCL  +NV
Sbjct: 1  MTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWANV 40

[Close]

BLAST of MELO3C034326 vs. ExPASy TrEMBL
Match: A0A5A7SM06 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold223G00260 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-08
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1  MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNV 41
          MTI PRAEKPIS +A+RFSQAI VCVRKTFPVRCL  ++V
Sbjct: 40 MTIAPRAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWADV 79

[Close]

BLAST of MELO3C034326 vs. ExPASy TrEMBL
Match: A0A5D3D1Q1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001030 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-08
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNV 41
           MTI PRAEKPIS +A+RFSQAI VCVRKTFPVRCL  +++
Sbjct: 64  MTIAPRAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWADI 103

[Close]

BLAST of MELO3C034326 vs. ExPASy TrEMBL
Match: A0A5A7U2R1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00800 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-08
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNV 41
           MTI P AEKPIS +A+RFSQAI VCVRKTFPVRCLN ++V
Sbjct: 63  MTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLNWTDV 102

[Close]

BLAST of MELO3C034326 vs. ExPASy TrEMBL
Match: A0A5D3CIY4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00380 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNV 41
          MTI P AEKPIS +A+RFSQAI VCVRKTFPVRCL  +NV
Sbjct: 1  MTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWANV 40

[Close]

BLAST of MELO3C034326 vs. ExPASy TrEMBL
Match: A0A5A7TUT1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001310 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   MTITPRAEKPISLYAIRFSQAISVCVRKTFPVRCLNQSNV 41
           MTI P AEKPIS +A+RFSQAI VCVRKTFPVRCL  +NV
Sbjct: 324 MTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTNV 363

The following BLAST results are available for this feature:

BLAST of MELO3C034326 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032062.1	7.7e-08	77.50	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0048673.1	1.0e-07	75.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK18171.1 CACTA en-...	[more]
KAA0049620.1	1.0e-07	77.50	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0046834.1	1.3e-07	77.50	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK11883.1	1.3e-07	77.50	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034326 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034326 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SM06	3.7e-08	77.50	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3D1Q1	4.9e-08	75.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7U2R1	4.9e-08	77.50	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CIY4	6.3e-08	77.50	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TUT1	6.3e-08	77.50	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MELO3C034326 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034326.1	MELO3C034326.1	mRNA