MELO3C034295.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034295.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionU4/U6 small nuclear ribonucleoprotein Prp3
Locationchr09: 2111067 .. 2111807 (-)
RNA-Seq ExpressionMELO3C034295.jh1
SyntenyMELO3C034295.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAAAGAATTAGTCGAGAAGTTGAAGAAAATTCCCCTAGTAAGTTAGGCAACAGAGATACTTCGATCCATGTTAGCTATTTTCCCCGCACTTTGATGTTGGTTTTACATATACAACTAGTTATACAAAATATTGTTGCCGACATCAAAACTGCAGTTGAAAATGCATGTCCAAACATTGTCTCCTGTGCTGACATTAGCCATTGCATCTAATTCAGCCATCGTCTTGGTAAAGTCGTTATTTGTCACTTTCTTAATTTATGGTGAATTCGTTTTGGGAAAAATGTCTAATATGTGAACGAAAAGCTCTAAATTCGTTTTCTTCAATGCATATATAAGTTTATATTTGACTTTGAATTTTATTGACATATGCAAGTGGTACTGCTAGGATTTATCTTTTTGAACTTTATGATTATTATTATTATTTCCAATTTGTGAAAAATCTTTTGTTATAATATTTTGCATCATTTTGGCCAATTTCACTTCTTCTGCAAATGGAGTTGGCGTCTATGTTTGAGTACGATCTGAAGTAGTGGAGAAATAAGATCTAACAATTTCCATTTAAACTTGACACATCACTCAAGCGCATAAGATCTAGAAAGGTCTGCCTTAATCAATTCACTAATTTGCAGAACCAACTAATGCAAATGATTTTGGGGTTACTTTGTTGCAGAACCAACTAATGCAAGAATCTATTTCAATATTGCACAAAAAGGTGAATAACTTAGTTTTAGAGTAA

mRNA sequence

ATGCAGAAAGAATTAGTCGAGAAGTTGAAGAAAATTCCCCTATTGAAAATGCATGTCCAAACATTGTCTCCTGTGCTGACATTAGCCATTGCATCTAATTCAGCCATCGTCTTGAACCAACTAATGCAAGAATCTATTTCAATATTGCACAAAAAGGTGAATAACTTAGTTTTAGAGTAA

Coding sequence (CDS)

ATGCAGAAAGAATTAGTCGAGAAGTTGAAGAAAATTCCCCTATTGAAAATGCATGTCCAAACATTGTCTCCTGTGCTGACATTAGCCATTGCATCTAATTCAGCCATCGTCTTGAACCAACTAATGCAAGAATCTATTTCAATATTGCACAAAAAGGTGAATAACTTAGTTTTAGAGTAA

Protein sequence

MQKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLNQLMQESISILHKKVNNLVLE
Homology
[Close]
BLAST of MELO3C034295.jh1 vs. NCBI nr
Match: KAA0051592.1 (hypothetical protein E6C27_scaffold174G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 2.85e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1  MQKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLNQL 41
          MQKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVL +L
Sbjct: 1  MQKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLMEL 41

[Close]
BLAST of MELO3C034295.jh1 vs. NCBI nr
Match: KAA0025904.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 7.70e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 2   QKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLNQL 41
           QKEL EKLKKIPLLKMHVQTLSPVLTLAIASNSAIVL +L
Sbjct: 125 QKELAEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLMEL 164

[Close]
BLAST of MELO3C034295.jh1 vs. NCBI nr
Match: KAA0032487.1 (70-Kd heat shock protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 7.85e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 1   MQKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLNQL 41
           MQKELVEKLKKIPLLKMHVQTLSPVLT+ IASNSAIVL +L
Sbjct: 169 MQKELVEKLKKIPLLKMHVQTLSPVLTIVIASNSAIVLMEL 209

[Close]
BLAST of MELO3C034295.jh1 vs. NCBI nr
Match: KAA0047405.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 2.56e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 2   QKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLN 39
           QKEL EKLKKIPLLKMHVQTLSPVLTLAIASNSAIVL+
Sbjct: 144 QKELAEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLS 181

[Close]
BLAST of MELO3C034295.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U769 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001360 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.38e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1  MQKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLNQL 41
          MQKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVL +L
Sbjct: 1  MQKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLMEL 41

[Close]
BLAST of MELO3C034295.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SJN6 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001930 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.73e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 2   QKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLNQL 41
           QKEL EKLKKIPLLKMHVQTLSPVLTLAIASNSAIVL +L
Sbjct: 125 QKELAEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLMEL 164

[Close]
BLAST of MELO3C034295.jh1 vs. ExPASy TrEMBL
Match: A0A5A7ST05 (70-Kd heat shock protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold500G00120 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.80e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 1   MQKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLNQL 41
           MQKELVEKLKKIPLLKMHVQTLSPVLT+ IASNSAIVL +L
Sbjct: 169 MQKELVEKLKKIPLLKMHVQTLSPVLTIVIASNSAIVLMEL 209

[Close]
BLAST of MELO3C034295.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U191 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00620 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.24e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 2   QKELVEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLN 39
           QKEL EKLKKIPLLKMHVQTLSPVLTLAIASNSAIVL+
Sbjct: 144 QKELAEKLKKIPLLKMHVQTLSPVLTLAIASNSAIVLS 181

The following BLAST results are available for this feature:
BLAST of MELO3C034295.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051592.12.85e-1395.12hypothetical protein E6C27_scaffold174G001360 [Cucumis melo var. makuwa][more]
KAA0025904.17.70e-1192.50U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa][more]
KAA0032487.17.85e-1190.2470-Kd heat shock protein [Cucumis melo var. makuwa][more]
KAA0047405.12.56e-1094.74U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa][more]
BLAST of MELO3C034295.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034295.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U7691.38e-1395.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SJN63.73e-1192.50U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5A7ST053.80e-1190.2470-Kd heat shock protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5A7U1911.24e-1094.74U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469... [more]
BLAST of MELO3C034295.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034295.jh1.t1MELO3C034295.jh1.t1mRNA