MELO3C034255.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C034255.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	CACTA en-spm transposon protein
Location	chr10: 18973347 .. 18974033 (-)
RNA-Seq Expression	MELO3C034255.jh1
Synteny	MELO3C034255.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTGTTGGCTATCCTTCAGTTATGGTAGCCTCTATAGTTTGAAGTTAGTTATTGAAAAATAGTGAAAATTCAAGGGAGTAAGTTATGGATGTGAGAGAGTGAGAGAGATATGTTTCTAATCAAACCTATTTATGTTTTAGGGACTTAAACGATGGATAAGGGCTGGATGAAACTTAGAAATAAGTTCTCCCTTGATTATAGACATGAAGTGACCTAATTTTTAGAATTTTCCAAGTTTCACGTTGATGCCTGCGGACGATTAAGGTGTCCATGCAAGAGATGTTTGAATTTAAATTGGAGCTCATTAGAGGGTGTCGAACGACATCTACTGACTATTGGAATATCCCCTATTACATAGAATGGGTGTATCATGGAGAGTCATTAAGCTCTAGAGGTACAGAAAACTTTGAGGAATGAACTAGTAGTAATTCTTTTGATGAAGGAACTAGTAGTAGACAATTTAATGAAGAAGGTGATATGTTTGGTATGCTAAATGATTTACAAGCCCCTATTGAACATGAAGAGGAAACAGAGGAATTTCGTTTGGAAGATGAAATGTCGATGAATGTTGGGGTAGATATAGATGAAGATAGAACAAATAATATATTTCAGAACTTATTGAATGAAGCACGTAATGAGTTGTACCCCAGTTGTTCTGACTTTTCGTCGTTGAATTTTTTGGTTA

mRNA sequence

GTTGTGTTGGCTATCCTTCAGTTATGGGACTTAAACGATGGATAAGGGCTGGATGAAACTTAGAAATAAGTTCTCCCTTGATTATAGACATGAAGTGACCTAATTTTTAGAATTTTCCAAGTTTCACGTTGATGCCTGCGGACGATTAAGGTGTCCATGCAAGAGATGTTTGAATTTAAATTGGAGCTCATTAGAGGGTGTCGAACGACATCTACTGACTATTGGAATATCCCCTATTACATAGAATGGGTGTATCATGGAGAGTCATTAAGCTCTAGAGGTACAGAAAACTTTGAGGAATGAACTAGTAGTAATTCTTTTGATGAAGGAACTAGTAGTAGACAATTTAATGAAGAAGGTGATATGTTTGGTATGCTAAATGATTTACAAGCCCCTATTGAACATGAAGAGGAAACAGAGGAATTTCGTTTGGAAGATGAAATGTCGATGAATGTTGGGGTAGATATAGATGAAGATAGAACAAATAATATATTTCAGAACTTATTGAATGAAGCACGTAATGAGTTGTACCCCAGTTGTTCTGACTTTTCGTCGTTGAATTTTTTGGTTA

Coding sequence (CDS)

ATGTTTGGTATGCTAAATGATTTACAAGCCCCTATTGAACATGAAGAGGAAACAGAGGAATTTCGTTTGGAAGATGAAATGTCGATGAATGTTGGGGTAGATATAGATGAAGATAGAACAAATAATATATTTCAGAACTTATTGAATGAAGCACGTAATGAGTTGTACCCCAGTTGTTCTGACTTTTCGTCGTTGAATTTTTTGGTT

Protein sequence

MFGMLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCSDFSSLNFLV

Homology

[Close]

BLAST of MELO3C034255.jh1 vs. NCBI nr
Match: TYK18968.1 (uncharacterized protein E5676_scaffold418G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 3.33e-30
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1   MFGMLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCS 60
           +FGMLNDLQAPIEHEEE EEFRLEDEM+MNVGV+IDED TNNIFQ+LLN+ARNELYP CS
Sbjct: 184 IFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCS 243

Query: 61  DFSSLNFLV 69
           +FSSLNFLV
Sbjct: 244 EFSSLNFLV 252

[Close]

BLAST of MELO3C034255.jh1 vs. NCBI nr
Match: KAA0056368.1 (uncharacterized protein E6C27_scaffold186G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 3.35e-30
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1   MFGMLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCS 60
           +FGMLNDLQAPIEHEEE EEFRLEDEM+MNVGV+IDED TNNIFQ+LLN+ARNELYP CS
Sbjct: 110 IFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCS 169

Query: 61  DFSSLNFLV 69
           +FSSLNFLV
Sbjct: 170 EFSSLNFLV 178

[Close]

BLAST of MELO3C034255.jh1 vs. NCBI nr
Match: KAA0032327.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 1.20e-29
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MFGMLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCS 60
          MFGMLNDL APIEHEEE EE RLEDEM MNVGV+ID DRTNNIFQ+LLNEARNELYP CS
Sbjct: 1  MFGMLNDLPAPIEHEEEIEELRLEDEMPMNVGVEIDGDRTNNIFQDLLNEARNELYPGCS 60

Query: 61 DFSSLNFLV 69
          +F SLNFLV
Sbjct: 61 EFLSLNFLV 69

[Close]

BLAST of MELO3C034255.jh1 vs. NCBI nr
Match: KAA0064176.1 (CACTA transposable element [Cucumis melo var. makuwa] >TYK02853.1 CACTA transposable element [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 2.74e-29
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 4  MLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCSDFS 63
          MLNDLQAPIEHEEETEE RLEDEM MNVGVDIDEDRTNNIF +LLNE RNELYP CS+FS
Sbjct: 1  MLNDLQAPIEHEEETEELRLEDEMPMNVGVDIDEDRTNNIFYDLLNEERNELYPGCSEFS 60

Query: 64 SLNFLV 69
          SLNFLV
Sbjct: 61 SLNFLV 66

[Close]

BLAST of MELO3C034255.jh1 vs. NCBI nr
Match: TYK11771.1 (uncharacterized protein E5676_scaffold304G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 2.78e-29
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1   MFGMLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCS 60
           MFGMLNDLQAP+EHEEE E  RLEDEM+MNVGVDIDEDRTNNI+Q+LLNEARNELYP CS
Sbjct: 273 MFGMLNDLQAPVEHEEEIELCRLEDEMAMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 332

Query: 61  DFSSLNFLV 69
           +FSSLN LV
Sbjct: 333 EFSSLNLLV 341

[Close]

BLAST of MELO3C034255.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D5X7 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00580 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.61e-30
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1   MFGMLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCS 60
           +FGMLNDLQAPIEHEEE EEFRLEDEM+MNVGV+IDED TNNIFQ+LLN+ARNELYP CS
Sbjct: 184 IFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCS 243

Query: 61  DFSSLNFLV 69
           +FSSLNFLV
Sbjct: 244 EFSSLNFLV 252

[Close]

BLAST of MELO3C034255.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UMP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001050 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.62e-30
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1   MFGMLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCS 60
           +FGMLNDLQAPIEHEEE EEFRLEDEM+MNVGV+IDED TNNIFQ+LLN+ARNELYP CS
Sbjct: 110 IFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCS 169

Query: 61  DFSSLNFLV 69
           +FSSLNFLV
Sbjct: 170 EFSSLNFLV 178

[Close]

BLAST of MELO3C034255.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SSE5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001860 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 5.81e-30
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MFGMLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCS 60
          MFGMLNDL APIEHEEE EE RLEDEM MNVGV+ID DRTNNIFQ+LLNEARNELYP CS
Sbjct: 1  MFGMLNDLPAPIEHEEEIEELRLEDEMPMNVGVEIDGDRTNNIFQDLLNEARNELYPGCS 60

Query: 61 DFSSLNFLV 69
          +F SLNFLV
Sbjct: 61 EFLSLNFLV 69

[Close]

BLAST of MELO3C034255.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BT53 (CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00550 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 1.32e-29
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 4  MLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCSDFS 63
          MLNDLQAPIEHEEETEE RLEDEM MNVGVDIDEDRTNNIF +LLNE RNELYP CS+FS
Sbjct: 1  MLNDLQAPIEHEEETEELRLEDEMPMNVGVDIDEDRTNNIFYDLLNEERNELYPGCSEFS 60

Query: 64 SLNFLV 69
          SLNFLV
Sbjct: 61 SLNFLV 66

[Close]

BLAST of MELO3C034255.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CIW6 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00980 PE=4 SV=1)

HSP 1 Score: 119 bits (297), Expect = 1.35e-29
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1   MFGMLNDLQAPIEHEEETEEFRLEDEMSMNVGVDIDEDRTNNIFQNLLNEARNELYPSCS 60
           MFGMLNDLQAP+EHEEE E  RLEDEM+MNVGVDIDEDRTNNI+Q+LLNEARNELYP CS
Sbjct: 273 MFGMLNDLQAPVEHEEEIELCRLEDEMAMNVGVDIDEDRTNNIYQDLLNEARNELYPGCS 332

Query: 61  DFSSLNFLV 69
           +FSSLN LV
Sbjct: 333 EFSSLNLLV 341

The following BLAST results are available for this feature:

BLAST of MELO3C034255.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18968.1	3.33e-30	86.96	uncharacterized protein E5676_scaffold418G00580 [Cucumis melo var. makuwa]	[more]
KAA0056368.1	3.35e-30	86.96	uncharacterized protein E6C27_scaffold186G001050 [Cucumis melo var. makuwa]	[more]
KAA0032327.1	1.20e-29	85.51	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0064176.1	2.74e-29	89.39	CACTA transposable element [Cucumis melo var. makuwa] >TYK02853.1 CACTA transpos...	[more]
TYK11771.1	2.78e-29	85.51	uncharacterized protein E5676_scaffold304G00980 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034255.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034255.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5X7	1.61e-30	86.96	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UMP4	1.62e-30	86.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SSE5	5.81e-30	85.51	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BT53	1.32e-29	89.39	CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3CIW6	1.35e-29	85.51	DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of MELO3C034255.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034255.jh1.t1	MELO3C034255.jh1.t1	mRNA