MELO3C034254 (gene) Melon (DHL92) v4

Overview
NameMELO3C034254
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon gag protein
Locationchr05: 22409751 .. 22410614 (-)
RNA-Seq ExpressionMELO3C034254
SyntenyMELO3C034254
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGAGAAGATCGTCGTCTCAAATATGTTACAACCAAGAAGATCATCGTCTCAAATATGTTGCAGCTGAGAAGATTATCGTTCTTAAATATGTTGTAGCAGAGAAGATCATCGTCTCAAATATATTACAACCGAGAAGATCGTCGTCTCAAATACGTTGCAGCCAAAAAGGTCGTCATCTCATATATGTTGCAGCCGAGGATGTCGTCGTCTCAAATATATTATCGTCGAGAAGGTCGTCCCCTAAAATATGTTGCAGCTCAGAAGATTGCCGTTCTTAAATATGTTGAAGCAGAAAAGATCATCGTCTCAAATATGTTACAATCGAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAATATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCTGAGGATGTCGTCGTCTCAAATATGTTGCCGTCGAGAAGGTCGTCCCTTCAAATATGTTGCAGCTGAGAAGATTGTCGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGCCTTAAATATGTTACAACTGAGAAGATCATCGTCTCAAATATGTTGCAGCTAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAGGATGTCGTCGTCTCTAATATGTCGCCGCCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAATAAGATCGTCGTTCTTAAATATGTTGCAGTAGAGAAGATCATCGTCTCAAATATGTTATAGCTAAGAATGTCGTCGTCTAATATATGTTGTAACCGAAAATGTCATCGTCTGAAATATGTTGCAGTCGAGAAGGTCGTCGTCTCAAATATGTT

mRNA sequence

CTGAGAAGATCGTCGTCTCAAATATGTTACAACCAAGAAGATCATCGTCTCAAATATGTTGTAGCAGAGAAGATCATCGTCTCAAATATATTACAACCGAGAAGATCGTCGTCTCAAATACGTTGCAGCCAAAAAAATGTCGTCGTCTAATATATGTTGTAACCGAAAATGTCATCGTCTGAAATATGTTGCAGTCGAGAAGGTCGTCGTCTCAAATATGTT

Coding sequence (CDS)

ATGTTACAACCAAGAAGATCATCGTCTCAAATATGTTGTAGCAGAGAAGATCATCGTCTCAAATATATTACAACCGAGAAGATCGTCGTCTCAAATACGTTGCAGCCAAAAAAATGTCGTCGTCTAATATATGTTGTAACCGAAAATGTCATCGTCTGA

Protein sequence

MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQPKKCRRLIYVVTENVIV
Homology
BLAST of MELO3C034254 vs. NCBI nr
Match: KAA0032176.1 (hypothetical protein E6C27_scaffold452G00990 [Cucumis melo var. makuwa] >TYK14421.1 hypothetical protein E5676_scaffold186G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQPKK----------CRRLIYVVTENV 52
           MLQPRRSSSQICCS++D RLKYI    +VVS+ LQP+K          CRRL YVV E V
Sbjct: 231 MLQPRRSSSQICCSQKDLRLKYIVATNVVVSDMLQPRKSSSHICCSRGCRRLTYVVAEKV 290

BLAST of MELO3C034254 vs. NCBI nr
Match: KAA0048558.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK28360.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 9.3e-08
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQPKKCRRLIYVVTENVIV 53
           MLQ RRSSS+ICC+RE  RLKY+TT+KIVVSN    +KC R  YV  + ++V
Sbjct: 582 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVV 633

BLAST of MELO3C034254 vs. NCBI nr
Match: KAA0060518.1 (hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa] >TYK00758.1 hypothetical protein E5676_scaffold420G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQP-KKCRRLIYVVTENVIV 53
           MLQ RRSSSQICCSRE  RLKY+  EK+VVSN LQP ++ R L YV+ E V V
Sbjct: 152 MLQSRRSSSQICCSREGRRLKYVAVEKVVVSNMLQPSQEGRHLKYVIAEKVAV 204

BLAST of MELO3C034254 vs. NCBI nr
Match: KAA0031630.1 (hypothetical protein E6C27_scaffold139G003990 [Cucumis melo var. makuwa] >TYK04478.1 hypothetical protein E5676_scaffold409G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-07
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQPKKCRRLIYVVTENVIV 53
           MLQPRRSSSQICC+RED  LKY+T EKI++SN LQ  + R L  +V + V +
Sbjct: 88  MLQPRRSSSQICCNREDRHLKYVTVEKIIISNMLQSIEGRHLKNIVAKKVAI 139

BLAST of MELO3C034254 vs. NCBI nr
Match: KAA0066592.1 (hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 4.6e-07
Identity = 37/62 (59.68%), Postives = 40/62 (64.52%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQPK----------KCRRLIYVVTENV 53
           MLQ RRSS QICCSRE  RLKY+  EKIVVSN LQ +          +CRRL YV  E V
Sbjct: 55  MLQLRRSSFQICCSREGRRLKYVVVEKIVVSNMLQSRMSSSHICCSQECRRLKYVAIEKV 114

BLAST of MELO3C034254 vs. ExPASy TrEMBL
Match: A0A5A7SQ83 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00740 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQPKK----------CRRLIYVVTENV 52
           MLQPRRSSSQICCS++D RLKYI    +VVS+ LQP+K          CRRL YVV E V
Sbjct: 231 MLQPRRSSSQICCSQKDLRLKYIVATNVVVSDMLQPRKSSSHICCSRGCRRLTYVVAEKV 290

BLAST of MELO3C034254 vs. ExPASy TrEMBL
Match: A0A5D3DYN4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001990 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQPKKCRRLIYVVTENVIV 53
           MLQ RRSSS+ICC+RE  RLKY+TT+KIVVSN    +KC R  YV  + ++V
Sbjct: 582 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVV 633

BLAST of MELO3C034254 vs. ExPASy TrEMBL
Match: A0A5D3BNW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00180 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.9e-08
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQP-KKCRRLIYVVTENVIV 53
           MLQ RRSSSQICCSRE  RLKY+  EK+VVSN LQP ++ R L YV+ E V V
Sbjct: 152 MLQSRRSSSQICCSREGRRLKYVAVEKVVVSNMLQPSQEGRHLKYVIAEKVAV 204

BLAST of MELO3C034254 vs. ExPASy TrEMBL
Match: A0A5D3BZN7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00880 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-07
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQPKKCRRLIYVVTENVIV 53
           MLQPRRSSSQICC+RED  LKY+T EKI++SN LQ  + R L  +V + V +
Sbjct: 88  MLQPRRSSSQICCNREDRHLKYVTVEKIIISNMLQSIEGRHLKNIVAKKVAI 139

BLAST of MELO3C034254 vs. ExPASy TrEMBL
Match: A0A5A7VE10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001670 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 37/62 (59.68%), Postives = 40/62 (64.52%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSREDHRLKYITTEKIVVSNTLQPK----------KCRRLIYVVTENV 53
           MLQ RRSS QICCSRE  RLKY+  EKIVVSN LQ +          +CRRL YV  E V
Sbjct: 55  MLQLRRSSFQICCSREGRRLKYVVVEKIVVSNMLQSRMSSSHICCSQECRRLKYVAIEKV 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0032176.12.4e-0859.02hypothetical protein E6C27_scaffold452G00990 [Cucumis melo var. makuwa] >TYK1442... [more]
KAA0048558.19.3e-0859.62retrotransposon gag protein [Cucumis melo var. makuwa] >TYK28360.1 retrotranspos... [more]
KAA0060518.11.2e-0766.04hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa] >TYK0075... [more]
KAA0031630.12.7e-0759.62hypothetical protein E6C27_scaffold139G003990 [Cucumis melo var. makuwa] >TYK044... [more]
KAA0066592.14.6e-0759.68hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SQ831.2e-0859.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DYN44.5e-0859.62Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3BNW35.9e-0866.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BZN71.3e-0759.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VE102.2e-0759.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034254.1MELO3C034254.1mRNA