MELO3C034245 (gene) Melon (DHL92) v4

Overview
NameMELO3C034245
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGlial fibrillary acidic protein-like
Locationchr08: 27757509 .. 27758522 (+)
RNA-Seq ExpressionMELO3C034245
SyntenyMELO3C034245
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGAAACATTTTCAACTAGAGTCAGGGGTGAGTTGGCCAAAGAAATTAGAAGTTCTACTTTCAAAGACTTGTCAGTTGGGATTCATCAACAATTACTTGGAAGAGTTAAAAAGTTTATGAGAAAGCTTAATGCCGGAGCATAAAGCAAAGTTTACAAGCATATGGAAGCATAGGTGACCTCTTATACACTACCATTAATACATCAACATTGCGAGCTTTGTCACATTTCTAGGACCCTATGTTGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACAGAGGGAATAAGCCTTATATCTATGATCAAAAGTTGACTCTACAACGGTCACTATCAAAGTTTATGGGTGACATTCATGCATCTGAGATAAAGAAACAGATGAAGACAAAAGAAGATAGAAATTGTATTCCCATCAATTATCTCATCAATCTTGCGTGTGGTTATTTATCAGGGAAGAAAGGTTTGTCTCTCATCGCATTATGGGTGACATTATCAAAGTTTATGGGTGACATTCATGCATTTGAGATAAAGAAACAGATGAAGATAAAAGAAGATAGAAATTGTATTCCCATCAATTATCTCATCAATCTTGCGTGTGGTTATTTATCAGGGAAGAAGGGTTTGTCTATCGCATTATGTATCTATGGAACAATTATTTTTCCTAGAATTAAAGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTGTTGGGATAGAATGAGGGGTAAACCCTGTTATCCCAATCATGACAGAGACTTTCAGATCGTTAAATCATTGTCGAATCCAAGGCAGAGGAAAATTCTTCAACTGTGCTCCTATGCTTTTCATTTGGATTTCCAGTCATATAAGGTATCCTAATAATTTTGGATATCCTCAAATAAAATTCAGCAGTTCGTGGAATAATACAAGAAACACTATCTGAGAATTCAATAGTGCACACTGGGATCCAAAGGATCTAGAATTTGGAGTTTGGATGCAGTTTTTCAGCCATTTAACGACAGTAGAAGCAATTTGG

mRNA sequence

TCGAAACATTTTCAACTAGAGTCAGGGGTGAGTTGGCCAAAGAAATTAGAAGTTCTACTTTCAAAGACTTGTCAGTTGGGATTCATCAACAATTACTTGGAAGAGTTAAAAAGTTTATGAGAAAGCTTAATGCCGGAGCATAAAGCAAAGTTTACAAGCATATGGAAGCATAGGTGACCTCTTATACACTACCATTAATACATCAACATTGCGAGCTTTGTCACATTTCTAGGACCCTATGTTGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACAGAGGGAATAAGCCTTATATCTATGATCAAAAGTTGACTCTACAACGGTCACTATCAAAGTTTATGGGTGACATTCATGCATCTGAGATAAAGAAACAGATGAAGACAAAAGAAGATAGAAATTGTATTCCCATCAATTATCTCATCAATCTTGCGTGTGGTTATTTATCAGGGAAGAAAGGTTTGTCTCTCATCGCATTATGTATCTATGGAACAATTATTTTTCCTAGAATTAAAGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTGTTGGGATAGAATGAGGGGTAAACCCTGTTATCCCAATCATGACAGAGACTTTCAGATCGTTAAATCATTGTCGAATCCAAGGCAGAGGAAAATTCTTCAACTGTGCTCCTATGCTTTTCATTTGGATTTCCAGTCATATAAGGTATCCTAATAATTTTGGATATCCTCAAATAAAATTCAGCAGTTCGTGGAATAATACAAGAAACACTATCTGAGAATTCAATAGTGCACACTGGGATCCAAAGGATCTAGAATTTGGAGTTTGGATGCAGTTTTTCAGCCATTTAACGACAGTAGAAGCAATTTGG

Coding sequence (CDS)

ATGGGTGACATTCATGCATCTGAGATAAAGAAACAGATGAAGACAAAAGAAGATAGAAATTGTATTCCCATCAATTATCTCATCAATCTTGCGTGTGGTTATTTATCAGGGAAGAAAGGTTTGTCTCTCATCGCATTATGTATCTATGGAACAATTATTTTTCCTAGAATTAAAGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTGTTGGGATAGAATGA

Protein sequence

MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGYVEEEVVKIFVGIE
Homology
[Close]
BLAST of MELO3C034245 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1   MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGY 60
           MGDIHASE+KKQMKTKE RNCIPINYLINLA G L GKKGLSLIALCIYGT+IFPRIKGY
Sbjct: 156 MGDIHASELKKQMKTKEGRNCIPINYLINLARGCLLGKKGLSLIALCIYGTVIFPRIKGY 215

Query: 61  VEEEVVKIFVGIE 74
           VEEEVVKIFVGIE
Sbjct: 216 VEEEVVKIFVGIE 228

[Close]
BLAST of MELO3C034245 vs. NCBI nr
Match: KAA0065295.1 (uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 3.9e-28
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 1   MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGY 60
           MGDIHASE+KK MKTKE RNCIPINYLINLA G L GKKGLSLIALCIYGT+IFPRIKGY
Sbjct: 156 MGDIHASELKKHMKTKEGRNCIPINYLINLARGCLLGKKGLSLIALCIYGTVIFPRIKGY 215

Query: 61  VEEEVVKIFVGIE 74
           VEEEVVKIFVGIE
Sbjct: 216 VEEEVVKIFVGIE 228

[Close]
BLAST of MELO3C034245 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 1   MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGY 60
           MGDIHASE+KKQ+K KE RNCIPINYLINLA G LS KKGLSLIALCIYGTIIFPRIKGY
Sbjct: 42  MGDIHASELKKQIKAKEGRNCIPINYLINLARGCLSRKKGLSLIALCIYGTIIFPRIKGY 101

Query: 61  VEEEVVKIFVGIE 74
           VEEEVVKIFVGIE
Sbjct: 102 VEEEVVKIFVGIE 114

[Close]
BLAST of MELO3C034245 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 1   MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGY 60
           MGDIHASE+KKQ+K KE RNCIPINYLINLA G LS KKGLSLIALCIYGTIIFPRIKGY
Sbjct: 42  MGDIHASELKKQIKAKEGRNCIPINYLINLARGCLSRKKGLSLIALCIYGTIIFPRIKGY 101

Query: 61  VEEEVVKIFVGIE 74
           VEEEVVKIFVGIE
Sbjct: 102 VEEEVVKIFVGIE 114

[Close]
BLAST of MELO3C034245 vs. NCBI nr
Match: KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 3.3e-27
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1   MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGY 60
           MGDIHASE+KKQMKTKE RNCIPINYLINLA G L  K GLSLIALCIYGT+IFPRIKGY
Sbjct: 156 MGDIHASELKKQMKTKEGRNCIPINYLINLARGCLLRKNGLSLIALCIYGTVIFPRIKGY 215

Query: 61  VEEEVVKIFVGIE 74
           VEEEVVKIFVGIE
Sbjct: 216 VEEEVVKIFVGIE 228

[Close]
BLAST of MELO3C034245 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.0e-29
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1   MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGY 60
           MGDIHASE+KKQMKTKE RNCIPINYLINLA G L GKKGLSLIALCIYGT+IFPRIKGY
Sbjct: 156 MGDIHASELKKQMKTKEGRNCIPINYLINLARGCLLGKKGLSLIALCIYGTVIFPRIKGY 215

Query: 61  VEEEVVKIFVGIE 74
           VEEEVVKIFVGIE
Sbjct: 216 VEEEVVKIFVGIE 228

[Close]
BLAST of MELO3C034245 vs. ExPASy TrEMBL
Match: A0A5A7VHI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00080 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 1   MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGY 60
           MGDIHASE+KK MKTKE RNCIPINYLINLA G L GKKGLSLIALCIYGT+IFPRIKGY
Sbjct: 156 MGDIHASELKKHMKTKEGRNCIPINYLINLARGCLLGKKGLSLIALCIYGTVIFPRIKGY 215

Query: 61  VEEEVVKIFVGIE 74
           VEEEVVKIFVGIE
Sbjct: 216 VEEEVVKIFVGIE 228

[Close]
BLAST of MELO3C034245 vs. ExPASy TrEMBL
Match: A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.2e-28
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 1   MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGY 60
           MGDIHASE+KKQ+K KE RNCIPINYLINLA G LS KKGLSLIALCIYGTIIFPRIKGY
Sbjct: 42  MGDIHASELKKQIKAKEGRNCIPINYLINLARGCLSRKKGLSLIALCIYGTIIFPRIKGY 101

Query: 61  VEEEVVKIFVGIE 74
           VEEEVVKIFVGIE
Sbjct: 102 VEEEVVKIFVGIE 114

[Close]
BLAST of MELO3C034245 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.2e-28
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 1   MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGY 60
           MGDIHASE+KKQ+K KE RNCIPINYLINLA G LS KKGLSLIALCIYGTIIFPRIKGY
Sbjct: 42  MGDIHASELKKQIKAKEGRNCIPINYLINLARGCLSRKKGLSLIALCIYGTIIFPRIKGY 101

Query: 61  VEEEVVKIFVGIE 74
           VEEEVVKIFVGIE
Sbjct: 102 VEEEVVKIFVGIE 114

[Close]
BLAST of MELO3C034245 vs. ExPASy TrEMBL
Match: A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1   MGDIHASEIKKQMKTKEDRNCIPINYLINLACGYLSGKKGLSLIALCIYGTIIFPRIKGY 60
           MGDIHASE+KKQMKTKE RNCIPINYLINLA G L  K GLSLIALCIYGT+IFPRIKGY
Sbjct: 156 MGDIHASELKKQMKTKEGRNCIPINYLINLARGCLLRKNGLSLIALCIYGTVIFPRIKGY 215

Query: 61  VEEEVVKIFVGIE 74
           VEEEVVKIFVGIE
Sbjct: 216 VEEEVVKIFVGIE 228

The following BLAST results are available for this feature:
BLAST of MELO3C034245 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033221.11.0e-2891.78uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa][more]
KAA0065295.13.9e-2890.41uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa][more]
TYK16834.11.5e-2790.41glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0032013.11.5e-2790.41glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0046606.13.3e-2789.04glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C034245 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034245 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SUT05.0e-2991.78Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... [more]
A0A5A7VHI31.9e-2890.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SNY07.2e-2890.41Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3D0S27.2e-2890.41Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TXA11.6e-2789.04Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of MELO3C034245 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034245.1MELO3C034245.1mRNA