MELO3C034214.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034214.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr10: 16146217 .. 16146523 (+)
RNA-Seq ExpressionMELO3C034214.jh1
SyntenyMELO3C034214.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCATGAGGATGTACGCGCATTACAACCTTCTCATGTGTGAGAGGGTAGGGCCAGGTCGAGTAGATCGAAAAGGAAGAGGGGAAGCCAACGAGAGGCGGAAATTAAAGTCATACATATGGCGCTGGAGTGTACGAACGACTAACTCAGGACGATTGCAGAGGGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGTGCCAGGAATTCTTCTGCATATTGCGTGAGATGCTAGAACTAACCAGTTTGGATAGGGCGTTGTTGCAAAGGAACCTCTTGTCTCGACATGCGGGGTTTTGTACAG

mRNA sequence

ATGTCCCATGAGGATGTACGCGCATTACAACCTTCTCATGTGTGAGAGGGTAGGGCCAGGTCGAGTAGATCGAAAAGGAAGAGGGGAAGCCAACGAGAGGCGGAAATTAAAGTCATACATATGGCGCTGGAGTGTACGAACGACTAACTCAGGACGATTGCAGAGGGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGTGCCAGGAATTCTTCTGCATATTGCGTGAGATGCTAGAACTAACCAGTTTGGATAGGGCGTTGTTGCAAAGGAACCTCTTGTCTCGACATGCGGGGTTTTGTACAG

Coding sequence (CDS)

ATGAGGATGTACGCGCATTACAACCTTCTCATGTGTGAGAGGGTAGGGCCAGGTCGAGTAGATCGAAAAGGAAGAGGGGAAGCCAACGAGAGGCGGAAATTAAAGTCATACATATGGCGCTGGAGTGTACGAACGACTAACTCAGGACGATTGCAGAGGGGCCTGCACGCGCCCTTGCCAATGACAACCATGTGTGCCAGGAATTCTTCTGCATATTGCGTGAGATGCTAG

Protein sequence

MRMYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPMTTMCARNSSAYCVRC
Homology
BLAST of MELO3C034214.jh1 vs. NCBI nr
Match: TYK23166.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 3.82e-29
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 0

Query: 2   RMYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPM 61
           RMY H++LL  +RVG  RVDR+GRGEA+ER   KS+IW  SVRTTNSGRL+ GLHAPL M
Sbjct: 140 RMYTHHDLLAHQRVGSDRVDRRGRGEASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLM 199

Query: 62  TTMCARNSSAYCVRC 76
           TTMC+RNS AYCVRC
Sbjct: 200 TTMCSRNSYAYCVRC 214

BLAST of MELO3C034214.jh1 vs. NCBI nr
Match: TYK27431.1 (hypothetical protein E5676_scaffold325G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.82e-23
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 3   MYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPMT 62
           MY H +LL  +RVGP +VDR+GRGE +E   LK YIWR + +T+NSGRL+ G HA L MT
Sbjct: 54  MYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMT 113

Query: 63  TMCARNSSAYCVRC 76
           T CARN  AYCVRC
Sbjct: 114 TTCARNFFAYCVRC 127

BLAST of MELO3C034214.jh1 vs. NCBI nr
Match: KAA0056563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 2.35e-23
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 0

Query: 3   MYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPMT 62
           MY H +LL  +RVGP +VDR+GRGE +E   LK YIWR + +T+NSGRL+ G HA L MT
Sbjct: 160 MYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMT 219

Query: 63  TMCARNSSAYCVRC 76
           T CARN SAYCVRC
Sbjct: 220 TTCARNFSAYCVRC 233

BLAST of MELO3C034214.jh1 vs. NCBI nr
Match: KAA0057258.1 (hypothetical protein E6C27_scaffold280G00930 [Cucumis melo var. makuwa] >TYK18705.1 hypothetical protein E5676_scaffold257G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 7.21e-23
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 3  MYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPMT 62
          MY H +LL  +RVGP  VDR+GRGE +E   LK Y WR + +T+NSGRL+ G HA L MT
Sbjct: 1  MYVHPDLLALQRVGPDEVDRRGRGEVSETSMLKRYNWRSTKQTSNSGRLRSGQHATLQMT 60

Query: 63 TMCARNSSAYCVR 75
          T CARN SAYCVR
Sbjct: 61 TTCARNFSAYCVR 73

BLAST of MELO3C034214.jh1 vs. NCBI nr
Match: TYK08719.1 (hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 2.08e-22
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 0

Query: 3   MYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPMT 62
           MY H +LL  +RVG  +VDR+GRGE +E   LK YIW  + +T+NSGRL+ G HA L MT
Sbjct: 27  MYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWGSTKQTSNSGRLRSGQHATLQMT 86

Query: 63  TMCARNSSAYCVRC 76
           T CARN SAYCVRC
Sbjct: 87  TTCARNFSAYCVRC 100

BLAST of MELO3C034214.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DHQ9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001910 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 1.85e-29
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 0

Query: 2   RMYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPM 61
           RMY H++LL  +RVG  RVDR+GRGEA+ER   KS+IW  SVRTTNSGRL+ GLHAPL M
Sbjct: 140 RMYTHHDLLAHQRVGSDRVDRRGRGEASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLM 199

Query: 62  TTMCARNSSAYCVRC 76
           TTMC+RNS AYCVRC
Sbjct: 200 TTMCSRNSYAYCVRC 214

BLAST of MELO3C034214.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DUQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001260 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.83e-24
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 3   MYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPMT 62
           MY H +LL  +RVGP +VDR+GRGE +E   LK YIWR + +T+NSGRL+ G HA L MT
Sbjct: 54  MYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMT 113

Query: 63  TMCARNSSAYCVRC 76
           T CARN  AYCVRC
Sbjct: 114 TTCARNFFAYCVRC 127

BLAST of MELO3C034214.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UL03 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00680 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.14e-23
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 0

Query: 3   MYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPMT 62
           MY H +LL  +RVGP +VDR+GRGE +E   LK YIWR + +T+NSGRL+ G HA L MT
Sbjct: 160 MYVHPDLLALQRVGPDQVDRRGRGEVSETSSLKRYIWRSTKQTSNSGRLRSGQHATLQMT 219

Query: 63  TMCARNSSAYCVRC 76
           T CARN SAYCVRC
Sbjct: 220 TTCARNFSAYCVRC 233

BLAST of MELO3C034214.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D580 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00050 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.49e-23
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 3  MYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPMT 62
          MY H +LL  +RVGP  VDR+GRGE +E   LK Y WR + +T+NSGRL+ G HA L MT
Sbjct: 1  MYVHPDLLALQRVGPDEVDRRGRGEVSETSMLKRYNWRSTKQTSNSGRLRSGQHATLQMT 60

Query: 63 TMCARNSSAYCVR 75
          T CARN SAYCVR
Sbjct: 61 TTCARNFSAYCVR 73

BLAST of MELO3C034214.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CED6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00220 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.01e-22
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 0

Query: 3   MYAHYNLLMCERVGPGRVDRKGRGEANERRKLKSYIWRWSVRTTNSGRLQRGLHAPLPMT 62
           MY H +LL  +RVG  +VDR+GRGE +E   LK YIW  + +T+NSGRL+ G HA L MT
Sbjct: 27  MYVHPDLLALQRVGSDQVDRRGRGEVSETSSLKRYIWGSTKQTSNSGRLRSGQHATLQMT 86

Query: 63  TMCARNSSAYCVRC 76
           T CARN SAYCVRC
Sbjct: 87  TTCARNFSAYCVRC 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK23166.13.82e-2972.00retrotransposon protein [Cucumis melo var. makuwa][more]
TYK27431.11.82e-2362.16hypothetical protein E5676_scaffold325G001260 [Cucumis melo var. makuwa][more]
KAA0056563.12.35e-2363.51retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0057258.17.21e-2361.64hypothetical protein E6C27_scaffold280G00930 [Cucumis melo var. makuwa] >TYK1870... [more]
TYK08719.12.08e-2260.81hypothetical protein E5676_scaffold76G00220 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DHQ91.85e-2972.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DUQ68.83e-2462.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UL031.14e-2363.51Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D5803.49e-2361.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CED61.01e-2260.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034214.jh1.t1MELO3C034214.jh1.t1mRNA