MELO3C034208 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034208
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	low temperature-induced protein lt101.2
Location	chr10: 5337015 .. 5338826 (+)
RNA-Seq Expression	MELO3C034208
Synteny	MELO3C034208

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAATCCATCTCCCACGTGTAATTCCCAAAAGCTTAAGCAATTGCCACCTCCCTACTAGCTTTGGTTCTCCTCACTCTCTTCAAACAAAAGGAAAAAATAAACCATTTCTGTTTTGGCCCAAAATTCTTCAAGTTTTGGTACTGAGAAAGAAAAGGAAGAAAATATTGAAATGGGTTCAGAAACTTTTGTAGAAATCATATTAGCAATTCTCCTTCCACCTCTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTCTGATACCTTCAAACTCTGTTTCCTTTTCTCATTCATTTTACAAGAAAAGAAAACCTTGTGTTTGATCTTTTTTTTCTTTTCCTTTTTGTGGTCTTTTGATTTGCAAGTGCAGGTGGAGTTTTGGATTTGTTTGTTGCTGACCATTTTGGGATATATACCTGGAATTATATATGCAATTTATGTTATTGTTGGGTAAAAAGGAAAAGGAAGAAGAATGTTTTGAATGTGTACTTTTGTAAACGTCTGTTTTTTGTTTCGTTTTGTTCATGTAAGGTTGTGGTAAATCAATGAAGAATGGACATTTTGTGATTTTATTGATGAAGTTTTGGTTTTTGTTTTACTTTTCTCTTTATTCTCTCCCTCCCTAACTAGAAAGTAACGGTATGAAAATTGTTCTAAATTCATTTAGGAGAGTTCTGTTTGGTTTTGTTTTTTCAAGAAGGGATAGAAAAACAGAGCTCTCTTTCTTTGTTGTAGCAAATAAAATTCATAAATAGTTATAGTAGAATATTGTAGTATCTTTATTGAATATTTTCTGTATCCTTTTTCATGGAAAGCTAAATTGTGAGTTGATGTAAAAGAAAATAATATATTTGATAACACACTCTCTCTCAAAGGTAGTAAAGTAAAGATCAATTCGTCTTTGACAAGTAAACAAGTGAAGCGAGTAGTGGAAAGCAGTGGATAAAGCTTTTTTTGTGAAGACGGGCAGTGTCGTTGGGGAAATGATGATGAACAAAGTGAGTCATTTTTAATGTGTTTCGTGAGTTCTTGGAGTACATTATTGCGAGAGATTTAAATTTGAATAAGATTGCGGTTGTTATGTAGTAGTAGTGTTGAAAGACACCCATATCAGCCAGGTAGAAAGAATCGTGCACAACCATTATATCACTATAATGCATTTACTACTATGTATTATTAACTATTATGATCTAGGGGACGCGTGCCTGCTAGCTCCTATGTAGAATTAAAATGTAAGTAATTTGAGGGGCATGTGTTCCGGATGCATATAATAGTAGTCATTCTAGTTAACACTAAAGATGCGTAAGAAGAAAATTGGAGTCCAATCACAGAAAGTGCCTTGATGTAAGGAAGAATGTGAGACAATAGCAAAGTGTATAGTTCGAGCTACGAATATAGGCAGCATTCGAATCTAGTGATGGTGGTGATGGGGCAGAATCAACAGTATCAAATCAATCCAGAAGATCAGATACCCAGATACATTTTGTTTGAGATAATTAACACAGCAAGAAGAAACCATTAAGATCAAGGAGAAAACTAAAGTGGTCTCAAGTTGTTCATCTCAAAGCATTTCCTACGGTAGCATCGCATATCAGATACCGGTGTGAAGATCATCAGCATAGGAGTAAATAATGTTAATGTTGTATTATATGGATTGGACGCAAGTTCCAAACATGGGAGGTCCATGGTGCTTATTCACACCATACGAGGCCTGTCAAGGTGTGCGGTTGCTTTATATAAACTTCTCACATTTTTAACGTCCTCCATTTGAATAAGGGGAAGCAGCTGCAGCTGCAACACCTAATAGACGACTGA

mRNA sequence

GTTAATCCATCTCCCACGTGTAATTCCCAAAAGCTTAAGCAATTGCCACCTCCCTACTAGCTTTGGTTCTCCTCACTCTCTTCAAACAAAAGGAAAAAATAAACCATTTCTGTTTTGGCCCAAAATTCTTCAAGTTTTGGTACTGAGAAAGAAAAGGAAGAAAATATTGAAATGGGTTCAGAAACTTTTGTAGAAATCATATTAGCAATTCTCCTTCCACCTCTTGGAGTTTTCCTTCGCTATGGCTGTGGGCAAGAAGAAACCATTAAGATCAAGGAGAAAACTAAAGTGGTCTCAAGTTGTTCATCTCAAAGCATTTCCTACGGTAGCATCGCATATCAGATACCGGGGAAGCAGCTGCAGCTGCAACACCTAATAGACGACTGA

Coding sequence (CDS)

ATGGGTTCAGAAACTTTTGTAGAAATCATATTAGCAATTCTCCTTCCACCTCTTGGAGTTTTCCTTCGCTATGGCTGTGGGCAAGAAGAAACCATTAAGATCAAGGAGAAAACTAAAGTGGTCTCAAGTTGTTCATCTCAAAGCATTTCCTACGGTAGCATCGCATATCAGATACCGGGGAAGCAGCTGCAGCTGCAACACCTAATAGACGACTGA

Protein sequence

MGSETFVEIILAILLPPLGVFLRYGCGQEETIKIKEKTKVVSSCSSQSISYGSIAYQIPGKQLQLQHLIDD

Homology

[Close]

BLAST of MELO3C034208 vs. NCBI nr
Match: KAD7480046.1 (hypothetical protein E3N88_03182 [Mikania micrantha])

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-06
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1   MGSETFVEIILAILLPPLGVFLRYGCGQEETIKIKEKT 39
           MG+ETFVEIILAI+LPP+GVFLRYGCG+ +   +K+K+
Sbjct: 279 MGTETFVEIILAIILPPVGVFLRYGCGETQKAGLKKKS 316

[Close]

BLAST of MELO3C034208 vs. NCBI nr
Match: XP_022941664.1 (low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022999688.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_022999696.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_023554157.1 low temperature-induced protein lt101.2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.1 bits (144), Expect = 9.1e-06
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGSETFVEIILAILLPPLGVFLRYGCG E
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVE 29

[Close]

BLAST of MELO3C034208 vs. NCBI nr
Match: KAG7030774.1 (Hydrophobic protein RCI2A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.1 bits (144), Expect = 9.1e-06
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGSETFVEIILAILLPPLGVFLRYGCG E
Sbjct: 59 MGSETFVEIILAILLPPLGVFLRYGCGVE 87

[Close]

BLAST of MELO3C034208 vs. NCBI nr
Match: XP_004143609.2 (uncharacterized protein LOC101203086 [Cucumis sativus] >KAE8647966.1 hypothetical protein Csa_000540 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 9.1e-06
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGSETFVEIILAILLPPLGVFLRYGCG E
Sbjct: 64 MGSETFVEIILAILLPPLGVFLRYGCGVE 92

[Close]

BLAST of MELO3C034208 vs. NCBI nr
Match: XP_008445856.1 (PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 9.1e-06
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGSETFVEIILAILLPPLGVFLRYGCG E
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVE 29

[Close]

BLAST of MELO3C034208 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-06
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          M + TFV+II+AILLPPLGVFLR+GCG E
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVE 29

[Close]

BLAST of MELO3C034208 vs. ExPASy Swiss-Prot
Match: Q9ZNS6 (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.1e-05
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          M + TFVEIILAI+LPPLGVFL++GC  E
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVE 29

[Close]

BLAST of MELO3C034208 vs. ExPASy Swiss-Prot
Match: Q9ARD5 (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-04
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          M S TF+E+ILAI+LPP+GVFLRYG   E
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVE 29

[Close]

BLAST of MELO3C034208 vs. ExPASy Swiss-Prot
Match: P68178 (Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.2e-04
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGS T +E+ILAI+LPP+GVFLRY  G E
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVE 29

[Close]

BLAST of MELO3C034208 vs. ExPASy Swiss-Prot
Match: P68179 (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.2e-04
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGS T +E+ILAI+LPP+GVFLRY  G E
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVE 29

[Close]

BLAST of MELO3C034208 vs. ExPASy TrEMBL
Match: A0A5N6Q7N4 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_03182 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1   MGSETFVEIILAILLPPLGVFLRYGCGQEETIKIKEKT 39
           MG+ETFVEIILAI+LPP+GVFLRYGCG+ +   +K+K+
Sbjct: 279 MGTETFVEIILAIILPPVGVFLRYGCGETQKAGLKKKS 316

[Close]

BLAST of MELO3C034208 vs. ExPASy TrEMBL
Match: A0A6J1KKG3 (low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493964 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGSETFVEIILAILLPPLGVFLRYGCG E
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVE 29

[Close]

BLAST of MELO3C034208 vs. ExPASy TrEMBL
Match: A0A6J1FUC5 (low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC111446956 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGSETFVEIILAILLPPLGVFLRYGCG E
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVE 29

[Close]

BLAST of MELO3C034208 vs. ExPASy TrEMBL
Match: A0A0A0KRZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175890 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGSETFVEIILAILLPPLGVFLRYGCG E
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVE 29

[Close]

BLAST of MELO3C034208 vs. ExPASy TrEMBL
Match: A0A1S3BED1 (low temperature-induced protein lt101.2 OS=Cucumis melo OX=3656 GN=LOC103488748 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGSETFVEIILAILLPPLGVFLRYGCG E
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVE 29

[Close]

BLAST of MELO3C034208 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-09
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          MGSETF+EIILAILLPP+GVFLRYGCG E
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVE 29

[Close]

BLAST of MELO3C034208 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 50.8 bits (120), Expect = 5.1e-07
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          M + TFV+II+AILLPPLGVFLR+GCG E
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVE 29

[Close]

BLAST of MELO3C034208 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 47.8 bits (112), Expect = 4.3e-06
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGQE 30
          M + TFVEIILAI+LPPLGVFL++GC  E
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVE 29

The following BLAST results are available for this feature:

BLAST of MELO3C034208 vs. NCBI nr


Match Name	E-value	Identity	Description
KAD7480046.1	4.1e-06	68.42	hypothetical protein E3N88_03182 [Mikania micrantha]	[more]
XP_022941664.1	9.1e-06	96.55	low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low...	[more]
KAG7030774.1	9.1e-06	96.55	Hydrophobic protein RCI2A, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004143609.2	9.1e-06	96.55	uncharacterized protein LOC101203086 [Cucumis sativus] >KAE8647966.1 hypothetica...	[more]
XP_008445856.1	9.1e-06	96.55	PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo]	[more]

BLAST of MELO3C034208 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNQ7	7.2e-06	75.86	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]
Q9ZNS6	6.1e-05	72.41	Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1	[more]
Q9ARD5	1.4e-04	68.97	Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE...	[more]
P68178	5.2e-04	68.97	Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=...	[more]
P68179	5.2e-04	68.97	Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE...	[more]

BLAST of MELO3C034208 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6Q7N4	2.0e-06	68.42	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_03182 PE=3 SV=1	[more]
A0A6J1KKG3	4.4e-06	96.55	low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493...	[more]
A0A6J1FUC5	4.4e-06	96.55	low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0KRZ2	4.4e-06	96.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175890 PE=3 SV=1	[more]
A0A1S3BED1	4.4e-06	96.55	low temperature-induced protein lt101.2 OS=Cucumis melo OX=3656 GN=LOC103488748 ...	[more]

BLAST of MELO3C034208 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38905.1	4.2e-09	89.66	Low temperature and salt responsive protein family	[more]
AT3G05880.1	5.1e-07	75.86	Low temperature and salt responsive protein family	[more]
AT3G05890.1	4.3e-06	72.41	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 6..30 e-value: 1.6E-7 score: 31.4
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..30
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 10..25
None	No IPR available	PANTHER	PTHR21659:SF96	BNAA04G22250D PROTEIN	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034208.1	MELO3C034208.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane