MELO3C034177 (gene) Melon (DHL92) v4

Overview
NameMELO3C034177
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr10: 12508639 .. 12508847 (-)
RNA-Seq ExpressionMELO3C034177
SyntenyMELO3C034177
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATACTTCAAATATCGAACCCTAGATTTTGCACAAAAGGATACTGCACGACGGCGACGGAGCGACTTTGATCAAGCTGAAGAACAACAACACTCGGCGACGGAGCGACGTTCGACGGATGACGTTTGGAAGATGGAGCGACACCGACAAGTTCACAACGACACACGCGAAGAAAGAGAAGAAAAAATTGGGGGAGGCGGTGAGAA

mRNA sequence

ATGAAATACTTCAAATATCGAACCCTAGATTTTGCACAAAAGGATACTGCACGACGGCGACGGAGCGACTTTGATCAAGCTGAAGAACAACAACACTCGGCGACGGAGCGACGTTCGACGGATGACGTTTGGAAGATGGAGCGACACCGACAAGTTCACAACGACACACGCGAAGAAAGAGAAGAAAAAATTGGGGGAGGCGGTGAGAA

Coding sequence (CDS)

ATGAAATACTTCAAATATCGAACCCTAGATTTTGCACAAAAGGATACTGCACGACGGCGACGGAGCGACTTTGATCAAGCTGAAGAACAACAACACTCGGCGACGGAGCGACGTTCGACGGATGACGTTTGGAAGATGGAGCGACACCGACAAGTTCACAACGACACACGCGAAGAAAGAGAAGAAAAAATTGGGGGAGGCGGTGAG

Protein sequence

MKYFKYRTLDFAQKDTARRRRSDFDQAEEQQHSATERRSTDDVWKMERHRQVHNDTREEREEKIGGGGE
Homology
[Close]
BLAST of MELO3C034177 vs. NCBI nr
Match: KAA0051559.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK21263.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 15 DTARRRRSDFDQAEEQQHSATERRSTDDVWKMERHRQVHNDTREE 60
          D+ RRR SD DQAEE+Q S TER STDDVWKMER R+VH+D REE
Sbjct: 5  DSKRRRWSDLDQAEEEQRSVTERHSTDDVWKMERRRRVHSDRREE 49

[Close]
BLAST of MELO3C034177 vs. ExPASy TrEMBL
Match: A0A5D3DCG1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00140 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.6e-07
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 15 DTARRRRSDFDQAEEQQHSATERRSTDDVWKMERHRQVHNDTREE 60
          D+ RRR SD DQAEE+Q S TER STDDVWKMER R+VH+D REE
Sbjct: 5  DSKRRRWSDLDQAEEEQRSVTERHSTDDVWKMERRRRVHSDRREE 49

The following BLAST results are available for this feature:
BLAST of MELO3C034177 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051559.11.4e-0673.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of MELO3C034177 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034177 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DCG16.6e-0773.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of MELO3C034177 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034177.1MELO3C034177.1mRNA