MELO3C034128 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034128
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase subunit 10-like protein
Location	chr10: 3421588 .. 3422456 (+)
RNA-Seq Expression	MELO3C034128
Synteny	MELO3C034128

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGGAGAACCAAACACAAATTCAAGAAGATGATAATTCCGGTGCGGTGCTTCACTTGCGGCAAGGTCCTCTATTAATTCCATTTTTTCTTTTGTGATCTTCAAATATACTTATATATCTTGTTTTTTCATTGATTTGATTTTGATTCAACTTCAGGTGATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACTATCCAGAAGGGTAACACTAACAAACACCTTCATAATTATAATAGTTTTTGCTTCTCAAATCGAGAAACCCTAATCTCAGTGAGAACCAAAAAAGGGATGCATTTGGATAGGAATGAATGAAGGAATGAGATATATGTATGTAATTTTAAATGGGTTTTAGTAGAGGAAGGTATTTAGATGAGTAATAATGAATATATATGCAGGGAGGCATTGGATACGTTAGGGTTAGTACGCTACTGTTGCAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACAGTATAATACTTATATATATATACTCTCTCTTTCTCTAATTTATTCATTATGTATTACTATATATATGTATGTATGAATATGTGATTATGATTGTTGTACTGATATTTTGCAGCCATGGATAAGTCTGAAATCGTCTAAAGCCTAATTACGGGGAATTGCTTTGCCAACACAGTGAATTCTACAATGCATTGTTTGGATTTTGTGAAGATTGGTTTTACCTTTTCTTTTTAGAGCTAATAAAGTCTGGTAGCAAAATTAATTTAGCTTTCACAAATGTTTCCAAAATTCATTTATAGTAGAAAGATGAAAATTGAGATACGAATAGCCTAAGATGAAAATTTAAAGTACCATATGTTGTTTT

mRNA sequence

ATGAAATTGGAGAACCAAACACAAATTCAAGAAGATGATAATTCCGGTGCGGTGATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACTATCCAGAAGGGGAGGCATTGGATACGTTAGGGTTAGTACGCTACTGTTGCAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACACCATGGATAAGTCTGAAATCGTCTAAAGCCTAATTACGGGGAATTGCTTTGCCAACACAGTGAATTCTACAATGCATTGTTTGGATTTTGTGAAGATTGGTTTTACCTTTTCTTTTTAGAGCTAATAAAGTCTGGTAGCAAAATTAATTTAGCTTTCACAAATGTTTCCAAAATTCATTTATAGTAGAAAGATGAAAATTGAGATACGAATAGCCTAAGATGAAAATTTAAAGTACCATATGTTGTTTT

Coding sequence (CDS)

ATGAAATTGGAGAACCAAACACAAATTCAAGAAGATGATAATTCCGGTGCGGTGATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACTATCCAGAAGGGGAGGCATTGGATACGTTAGGGTTAGTACGCTACTGTTGCAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACACCATGGATAAGTCTGAAATCGTCTAA

Protein sequence

MKLENQTQIQEDDNSGAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

Homology

[Close]

BLAST of MELO3C034128 vs. NCBI nr
Match: XP_008446194.1 (PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo] >KAA0034305.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 75
          G VIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI
Sbjct: 11 GKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 70

Query: 76 V 77
          V
Sbjct: 71 V 71

[Close]

BLAST of MELO3C034128 vs. NCBI nr
Match: XP_004135479.1 (DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus] >KGN51793.1 hypothetical protein Csa_009052 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 75
          G VIGNKWDTYLDLLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI
Sbjct: 11 GKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 70

Query: 76 V 77
          +
Sbjct: 71 I 71

[Close]

BLAST of MELO3C034128 vs. NCBI nr
Match: XP_038893151.1 (DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 3.2e-25
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 75
          G VIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI
Sbjct: 11 GKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 70

Query: 76 V 77
          +
Sbjct: 71 I 71

[Close]

BLAST of MELO3C034128 vs. NCBI nr
Match: XP_022151052.1 (DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 7.2e-25
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 75
          G VIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI
Sbjct: 11 GKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 70

Query: 76 V 77
          V
Sbjct: 71 V 71

[Close]

BLAST of MELO3C034128 vs. NCBI nr
Match: PON41415.1 (DNA-directed RNA polymerase, subunit N/Rpb [Parasponia andersonii])

HSP 1 Score: 121.3 bits (303), Expect = 3.6e-24
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 7  TQIQEDDNSGAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLN 66
          +++Q ++  G VIGNKWDTYLDLLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLN
Sbjct: 2  SKVQGEEALGEVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 67 YNTMDKSE 75
          YNT+DKSE
Sbjct: 62 YNTLDKSE 69

[Close]

BLAST of MELO3C034128 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE 75
          G VIGNKWDTYL+LLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Sbjct: 11 GKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKSD 69

[Close]

BLAST of MELO3C034128 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE 75
          G VIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Sbjct: 11 GKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLEKSD 69

[Close]

BLAST of MELO3C034128 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-23
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE 75
          G VIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Sbjct: 11 GKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLLNYNTLEKSD 69

[Close]

BLAST of MELO3C034128 vs. ExPASy Swiss-Prot
Match: Q9VC49 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Drosophila melanogaster OX=7227 GN=Rpb10 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-19
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK 73
          G VIGNKW++YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Sbjct: 11 GKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLEK 67

[Close]

BLAST of MELO3C034128 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.1e-19
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK 73
          G ++GNKW+ YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Sbjct: 11 GKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67

[Close]

BLAST of MELO3C034128 vs. ExPASy TrEMBL
Match: A0A5A7SYN0 (DNA-directed RNA polymerase subunit 10-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003050 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.2e-27
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 75
          G VIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI
Sbjct: 11 GKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 70

Query: 76 V 77
          V
Sbjct: 71 V 71

[Close]

BLAST of MELO3C034128 vs. ExPASy TrEMBL
Match: A0A1S3BEG8 (DNA-directed RNA polymerase subunit 10-like protein OS=Cucumis melo OX=3656 GN=LOC103488997 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.2e-27
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 75
          G VIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI
Sbjct: 11 GKVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 70

Query: 76 V 77
          V
Sbjct: 71 V 71

[Close]

BLAST of MELO3C034128 vs. ExPASy TrEMBL
Match: A0A0A0KQ80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600940 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.3e-26
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 75
          G VIGNKWDTYLDLLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI
Sbjct: 11 GKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 70

Query: 76 V 77
          +
Sbjct: 71 I 71

[Close]

BLAST of MELO3C034128 vs. ExPASy TrEMBL
Match: A0A6J1DCG7 (DNA-directed RNA polymerase subunit 10-like protein OS=Momordica charantia OX=3673 GN=LOC111019076 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-25
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 75
          G VIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI
Sbjct: 11 GKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI 70

Query: 76 V 77
          V
Sbjct: 71 V 71

[Close]

BLAST of MELO3C034128 vs. ExPASy TrEMBL
Match: A0A2P5AY08 (DNA-directed RNA polymerase, subunit N/Rpb OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290090 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 7  TQIQEDDNSGAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLN 66
          +++Q ++  G VIGNKWDTYLDLLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLN
Sbjct: 2  SKVQGEEALGEVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 67 YNTMDKSE 75
          YNT+DKSE
Sbjct: 62 YNTLDKSE 69

[Close]

BLAST of MELO3C034128 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-26
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE 75
          G VIGNKWDTYL+LLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Sbjct: 11 GKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKSD 69

[Close]

BLAST of MELO3C034128 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-24
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 16 GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE 75
          G VIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Sbjct: 11 GKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLLNYNTLEKSD 69

The following BLAST results are available for this feature:

BLAST of MELO3C034128 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446194.1	1.7e-26	98.36	PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo] >K...	[more]
XP_004135479.1	1.1e-25	95.08	DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus] >KGN51793....	[more]
XP_038893151.1	3.2e-25	93.44	DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]	[more]
XP_022151052.1	7.2e-25	93.44	DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia]	[more]
PON41415.1	3.6e-24	80.88	DNA-directed RNA polymerase, subunit N/Rpb [Parasponia andersonii]	[more]

BLAST of MELO3C034128 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYA6	2.6e-25	88.14	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3...	[more]
Q39290	1.4e-23	83.05	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=...	[more]
Q8LFJ6	3.1e-23	83.05	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=...	[more]
Q9VC49	4.7e-19	73.68	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Drosophila melanog...	[more]
Q32P78	6.1e-19	70.18	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913...	[more]

BLAST of MELO3C034128 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYN0	8.2e-27	98.36	DNA-directed RNA polymerase subunit 10-like protein OS=Cucumis melo var. makuwa ...	[more]
A0A1S3BEG8	8.2e-27	98.36	DNA-directed RNA polymerase subunit 10-like protein OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0KQ80	5.3e-26	95.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600940 PE=3 SV=1	[more]
A0A6J1DCG7	3.5e-25	93.44	DNA-directed RNA polymerase subunit 10-like protein OS=Momordica charantia OX=36...	[more]
A0A2P5AY08	1.7e-24	80.88	DNA-directed RNA polymerase, subunit N/Rpb OS=Parasponia andersonii OX=3476 GN=P...	[more]

BLAST of MELO3C034128 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61700.1	1.8e-26	88.14	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	2.2e-24	83.05	RNA polymerases N / 8 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 14..72 e-value: 3.8E-28 score: 99.4
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 15..74
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 16..64 e-value: 3.3E-19 score: 68.9
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 15..74
IPR023580	RNA polymerase subunit RPB10	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 16..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034128.1	MELO3C034128.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity