MELO3C034125.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C034125.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	PMD domain-containing protein
Location	chr10: 9474373 .. 9475772 (+)
RNA-Seq Expression	MELO3C034125.jh1
Synteny	MELO3C034125.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACGAGTTATCTATTTCTTTGTGGGACTTATGGTCTATTGGGGGTCTTCCCATTAAGGGAGATTTCTATGAGGAAAGGATCCCTTCTTTGAAAGAATTAACCTCCACATCACGGGATAAGACGAAGTGTCTTCCAACGACCTGCCAATATCTTTTCCAGGCGTATTACTCAATAGTTTGTACGCAGAGGAATGATCGCTCGGCATCTTCTAAGAATGACTCCCAAGTAACTATTGGCTCCTAGATTTCGTTATGGTATCTTGGATCTAGGAGCTATGATAAGCCAACAACGCAAAAACAAAAGAAGGCGTCGCGCTCCAAATCTACTCAAAACCCTGATGGTTCGAAGATCCAAGCTCATGAGTGGTCTTCTAAGGAAAGCATGTTATTTGCAGAACTTGGAATCATGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTACTGGTTGTGCCTTTTCGTATTTTCTCACAAAGGATCGTTTCTTCGTCCTGGAGTATTTAGGGCTGCAAGCCTAATGGCCGCTGGCACTATTTATAATCTTGCAGTTCCAGTTTTGGCGAACATATACCATGGGCTAGGTTTGATAACCAAAGCCTCTAATCTGATAGGACGCATGGACTTTCGCTTTCCCATGCCTTACGTCCATGGCTGGTTAGCCCATTATTTTGGCACGCATTATCCACTTCCCACAGAAGTTCGAGGTCCCAAGATGACTAACATTTCAGGCGAAGGCGGGTCTATTTATTTTGGCGAATATGAGGCAGAGAATTGATCCATAATGGTGCGAGAATTCAGTGGCACGCTAACCTCCAGAACAGGAATAAACATGAACGCATGGTTGATACCTATGATTCATCGTTTCTGCAAACGTCATATTTCGTAAGCATGCGTTCCTGCTACTTGTCCTCTCGTTGCGAAAATACCTGGATCATAACATCATACAGTTCGTATCGATTTGGACGACAATTTGGCTTTTACCAGGATATCCCTAATGATATAGGGGGCATGCCACCTGCGATCACGCTGGATAATATATTACATCACTAGAGAATATGTACGAGGCGCAACACTTTATCTGAGTTATACTTGCCCGCCCGTTTGTTAGGGCCTTGCAAGCATGTAACTCAGCGATTTACAGACTGGTGGACCATGAGGCACATGACCTAGTTTGAGGATAACAGACACCATTTGGTGAGTAGTGCCATTCCTCCCCCTTCACAGCCTAGACTACCCAAGAACCGAGGGAGCAACCTAGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGGCTCCTAATCTTGAGGAGGAGGTAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAG

mRNA sequence

ATGGCGGACGAGTTATCTATTTCTTTGTGGGACTTATGGTCTATTGGGGGTCTTCCCATTAAGGGAGATTTCTATGAGGAAAGGATCCCTTCTTTGAAAGAATTAACCTCCACATCACGGGATAAGACGAAGTGTCTTCCAACGACCTGCCAATATCTTTTCCAGGCGTATTACTCAATAGTTTGTACGCAGAGGAATGATCGCTCGGCATCTTCTAAGAATGACTCCCAAGTAACTATTGGCTCCTAGATTTCGTTATGGTATCTTGGATCTAGGAGCTATGATAAGCCAACAACGCAAAAACAAAAGAAGGCGTCGCGCTCCAAATCTACTCAAAACCCTGATGGTTCGAAGATCCAAGCTCATGAGTGGTCTTCTAAGGAAAGCATGTTATTTGCAGAACTTGGAATCATGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTACTGGTTGTGCCTTTTCGTATTTTCTCACAAAGGATCGTTTCTTCGTCCTGGAGTATTTAGGGCTGCAAGCCTAATGGCCGCTGGCACTATTTATAATCTTGCAGTTCCAGTTTTGGCGAACATATACCATGGGCTAGGCGAAGGCGGGTCTATTTATTTTGGCGAATATGAGGCAGAGAATTGATCCATAATGGTGCGAGAATTCAGTGGCACGCTAACCTCCAGAACAGGAATAAACATGAACGCATGGTTGATACCTATGATTCATCGTTTCTGCAAACGTCATATTTCGATATCCCTAATGATATAGGGGGCATGCCACCTGCGATCACGCTGGATAATATATTACATCACTAGAGAATATGTACGAGGCGCAACACTTTATCTGAGTTATACTTGCCCGCCCGTTTGTTAGGGCCTTGCAAGCATGTAACTCAGCGATTTACAGACTGGTGGACCATGAGGCACATGACCTAGTTTGAGGATAACAGACACCATTTGGTGAGTAGTGCCATTCCTCCCCCTTCACAGCCTAGACTACCCAAGAACCGAGGGAGCAACCTAGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGGCTCCTAATCTTGAGGAGGAGGTAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAG

Coding sequence (CDS)

ATGTTATTTGCAGAACTTGGAATCATGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTACTGGTTGTGCCTTTTCGTATTTTCTCACAAAGGATCGTTTCTTCGTCCTGGAGTATTTAGGGCTGCAAGCCTAATGGCCGCTGGCACTATTTATAATCTTGCAGTTCCAGTTTTGGCGAACATATACCATGGGCTAGGCGAAGGCGGGTCTATTTATTTTGGCGAATATGAGGCAGAGAATTGA

Protein sequence

MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVPVLANIYHGLGEGGSIYFGEYEAEN

Homology

[Close]

BLAST of MELO3C034125.jh1 vs. NCBI nr
Match: KAA0057699.1 (hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa] >TYK27485.1 hypothetical protein E5676_scaffold970G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 1.84e-38
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1   MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVP 60
           MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLA+P
Sbjct: 94  MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIP 153

Query: 61  VLANIYHGLG 70
           VLANIYHGLG
Sbjct: 154 VLANIYHGLG 163

[Close]

BLAST of MELO3C034125.jh1 vs. NCBI nr
Match: KAA0046555.1 (hypothetical protein E6C27_scaffold114G00780 [Cucumis melo var. makuwa] >TYK28704.1 hypothetical protein E5676_scaffold403G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 2.40e-36
Identity = 76/105 (72.38%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 1   MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVP 60
           MLFAELGI DDLKDETYLAAFLS WLCLFVFS KGSFL PGVFRAASLMAAGTIY+ AVP
Sbjct: 207 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLCPGVFRAASLMAAGTIYSFAVP 266

Query: 61  VLANIYHGL-----------------------GEGGSIYFGEYEA 82
           VLANIYHGL                       GEGGSIYFGEYEA
Sbjct: 267 VLANIYHGLAYYFDTHYPLPTEVRGPKMTNFSGEGGSIYFGEYEA 311

[Close]

BLAST of MELO3C034125.jh1 vs. NCBI nr
Match: TYK20969.1 (hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (326), Expect = 7.46e-34
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVP 60
           MLFAELGI DDLKDETYLAAFLS WLCLFVF  KGSFLRPGVFR ASLMAAGTIY+LAVP
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHGLG 70
           VLANIYHGLG
Sbjct: 327 VLANIYHGLG 336

[Close]

BLAST of MELO3C034125.jh1 vs. NCBI nr
Match: TYK03767.1 (hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 2.01e-33
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVP 60
          MLF ELGI DDLKDETYLAAFLS WLCLFVFS KGSF RPGVFRAASLMAAGTIY+LAVP
Sbjct: 1  MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFFRPGVFRAASLMAAGTIYSLAVP 60

Query: 61 VLANIYHGLG 70
          VLANIYHGLG
Sbjct: 61 VLANIYHGLG 70

[Close]

BLAST of MELO3C034125.jh1 vs. NCBI nr
Match: KAA0061097.1 (hypothetical protein E6C27_scaffold348G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 2.01e-33
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVP 60
          MLF ELGI DDLKDETYLAAFLS WLCLFVFS KGSF RPGVFRAASLMAAGTIY+LAVP
Sbjct: 1  MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFFRPGVFRAASLMAAGTIYSLAVP 60

Query: 61 VLANIYHGLG 70
          VLANIYHGLG
Sbjct: 61 VLANIYHGLG 70

[Close]

BLAST of MELO3C034125.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UVX0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00390 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 8.93e-39
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1   MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVP 60
           MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLA+P
Sbjct: 94  MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAIP 153

Query: 61  VLANIYHGLG 70
           VLANIYHGLG
Sbjct: 154 VLANIYHGLG 163

[Close]

BLAST of MELO3C034125.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TYW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00180 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 1.16e-36
Identity = 76/105 (72.38%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 1   MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVP 60
           MLFAELGI DDLKDETYLAAFLS WLCLFVFS KGSFL PGVFRAASLMAAGTIY+ AVP
Sbjct: 207 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLCPGVFRAASLMAAGTIYSFAVP 266

Query: 61  VLANIYHGL-----------------------GEGGSIYFGEYEA 82
           VLANIYHGL                       GEGGSIYFGEYEA
Sbjct: 267 VLANIYHGLAYYFDTHYPLPTEVRGPKMTNFSGEGGSIYFGEYEA 311

[Close]

BLAST of MELO3C034125.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DCE5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18270G00010 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 3.61e-34
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVP 60
           MLFAELGI DDLKDETYLAAFLS WLCLFVF  KGSFLRPGVFR ASLMAAGTIY+LAVP
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHGLG 70
           VLANIYHGLG
Sbjct: 327 VLANIYHGLG 336

[Close]

BLAST of MELO3C034125.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BW91 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001500 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 9.75e-34
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVP 60
          MLF ELGI DDLKDETYLAAFLS WLCLFVFS KGSF RPGVFRAASLMAAGTIY+LAVP
Sbjct: 1  MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFFRPGVFRAASLMAAGTIYSLAVP 60

Query: 61 VLANIYHGLG 70
          VLANIYHGLG
Sbjct: 61 VLANIYHGLG 70

[Close]

BLAST of MELO3C034125.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V2J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00060 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 9.75e-34
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MLFAELGIMDDLKDETYLAAFLSYWLCLFVFSHKGSFLRPGVFRAASLMAAGTIYNLAVP 60
          MLF ELGI DDLKDETYLAAFLS WLCLFVFS KGSF RPGVFRAASLMAAGTIY+LAVP
Sbjct: 1  MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFFRPGVFRAASLMAAGTIYSLAVP 60

Query: 61 VLANIYHGLG 70
          VLANIYHGLG
Sbjct: 61 VLANIYHGLG 70

The following BLAST results are available for this feature:

BLAST of MELO3C034125.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057699.1	1.84e-38	98.57	hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa] >TYK2748...	[more]
KAA0046555.1	2.40e-36	72.38	hypothetical protein E6C27_scaffold114G00780 [Cucumis melo var. makuwa] >TYK2870...	[more]
TYK20969.1	7.46e-34	91.43	hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]	[more]
TYK03767.1	2.01e-33	91.43	hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa]	[more]
KAA0061097.1	2.01e-33	91.43	hypothetical protein E6C27_scaffold348G00060 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034125.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034125.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVX0	8.93e-39	98.57	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TYW3	1.16e-36	72.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DCE5	3.61e-34	91.43	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3BW91	9.75e-34	91.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V2J6	9.75e-34	91.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C034125.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 15..69
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 15..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034125.jh1.t1	MELO3C034125.jh1.t1	mRNA