MELO3C034086.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C034086.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGirdin-like
Locationchr10: 7110171 .. 7111374 (+)
RNA-Seq ExpressionMELO3C034086.jh1
SyntenyMELO3C034086.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAACATATCCAAGGAAGGAGGAGGTTTGGGTGTCTTTTTTTTTTTTTTTTTGCAAAAATGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCTTTTGAAGGTGATGATATATAGATGTGGAGATTTTCATAGTTTGCTTTTGTTGGGACCATGATGAGGTATTAACTATACACCATTATTAGTTTTGCATTAGGTATGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGAGTCTAACTTTTCAACGATCCTGAAGATTTTCAAAGAAAAAACGTCGAGCAGTATGTGCATGAAAATCTGTGAGGAAGATAAAAGACAAAGGACACTACGAAGGAGTTACTAGTGGGTACGAGGCATGATAGGCAAACAGAAGAAAGAATATAATAGTTACCTCAAGGGAGGTAGTTGAAAGGGTAAAAGAGACAAGCTTCGAACAACCAAATCAATAGGTTAAGAAGAGCATAGAACTAGAAGAGAAAAATCGATTGTTAGAACAAGAGAACGAGAAACTTCATAAAGAGACAAGTCAATGGATGGATCATGCGTCTTATTTGCAGAAAGAATTTGAAAAAACCAAGAGTTTCTTAAGAAATCAAGATAAGTTTGAAAAATAAAAAGACAACATTACAAGCAACAATGGAGTCACAAGATGAATATATTAAAGATTTAGAAGGTGGGAAAGAATATTTTCTCGAGTTGTGAATGATTTGAATACATCAATTGGAAAACGGGAAACACAAATATTGGATTTAGAAGCACATAATCATTCTCAAAGTCAAACTGTTGATAACCTACATTTGAAGATGGCCAAGTGCTCTAAAGAGTATAAGATACCGAAAAATTATGCTGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAGGAATATGAGTCATTGAAGATGGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAATGAGAGATTTCCAGGTGCTAGTGGAACGTGTAGATTAGACGATTGAATTTCTCATAATAGTGTCTAAAAGAGCAAATGGTTTTGCATAATGGGCAACTGATTTGTGGGTTAATGTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAAATTCTTGAAAATGATATGCAAAGAACTCGGGCATTTTGGTCATTTTCATTAATTGTTAATTTTGCTATTGACAAT

mRNA sequence

ATCCAACATATCCAAGGAAGGAGGAGGTTTGGGTGTCTTTTTTTTTTTTTTTTTGCAAAAATGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCTTTTGAAGGTGATGATATATAGATGTGGAGATTTTCATAGTTTGCTTTTGTTGGGACCATGATGAGGTATTAACTATACACCATTATTAGTTTTGCATTAGGTATGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGAGTCTAACTTTTCAACGATCCTGAAGATTTTCAAAGAAAAAACGTCGAGCAGTATGTGCATGAAAATCTGTGAGGAAGATAAAAGACAAAGGACACTACGAAGGAGTTACTAGTGGGTACGAGGCATGATAGGCAAACAGAAGAAAGAATATAATAGTTACCTCAAGGGAGGTAGTTGAAAGGGTAAAAGAGACAAGCTTCGAACAACCAAATCAATAGGTTAAGAAGAGCATAGAACTAGAAGAGAAAAATCGATTGTTAGAACAAGAGAACGAGAAACTTCATAAAGAGACAAGTCAATGGATGGATCATGCGTCTTATTTGCAGAAAGAATTTGAAAAAACCAAGAGTTTCTTAAGAAATCAAGATAAGTTTGAAAAATAAAAAGACAACATTACAAGCAACAATGGAGTCACAAGATGAATATATTAAAGATTTAGAAGGTGGGAAAGAATATTTTCTCGAGTTGTGAATGATTTGAATACATCAATTGGAAAACGGGAAACACAAATATTGGATTTAGAAGCACATAATCATTCTCAAAGTCAAACTGTTGATAACCTACATTTGAAGATGGCCAAGTGCTCTAAAGAGTATAAGATACCGAAAAATTATGCTGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAGGAATATGAGTCATTGAAGATGGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAATGAGAGATTTCCAGGTGCTAGTGGAACGTGTAGATTAGACGATTGAATTTCTCATAATAGTGTCTAAAAGAGCAAATGGTTTTGCATAATGGGCAACTGATTTGTGGGTTAATGTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAAATTCTTGAAAATGATATGCAAAGAACTCGGGCATTTTGGTCATTTTCATTAATTGTTAATTTTGCTATTGACAAT

Coding sequence (CDS)

ATGGCCAAGTGCTCTAAAGAGTATAAGATACCGAAAAATTATGCTGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAGGAATATGAGTCATTGAAGATGGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAATGAGAGATTTCCAGGTGCTAGTGGAACGTGTAGATTAG

Protein sequence

MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVLVERVD
Homology
[Close]
BLAST of MELO3C034086.jh1 vs. NCBI nr
Match: TYK04062.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 1.27e-29
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 1  MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVL 60
          MA+CS+EY+I KNYADSLHYQLTA QNSS RI QEYESL  DYVQMKVDYDLQ RDFQVL
Sbjct: 21 MAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVL 80

Query: 61 VERVD 65
          VERVD
Sbjct: 81 VERVD 85

[Close]
BLAST of MELO3C034086.jh1 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 3.91e-28
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 0 

Query: 1   MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVL 60
           MA+CS+EY+I KNYADSLHYQLTA QNSS RI QEYESL +DYVQMKVDYD++ RDFQVL
Sbjct: 112 MAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLNIDYVQMKVDYDMETRDFQVL 171

Query: 61  VERVD 65
           VERVD
Sbjct: 172 VERVD 176

[Close]
BLAST of MELO3C034086.jh1 vs. NCBI nr
Match: KAA0037619.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 1.71e-27
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 1  MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVL 60
          MA+CS+EY+I KNYADSLHYQLTA QNSS RI QEYESL  D VQMK+DYDL+ RDFQVL
Sbjct: 21 MAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLNTDNVQMKIDYDLRTRDFQVL 80

Query: 61 VERVD 65
          VERVD
Sbjct: 81 VERVD 85

[Close]
BLAST of MELO3C034086.jh1 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 2.05e-26
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 1   MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVL 60
           MA+CS+EY+I KNY +SLHYQLTA QNSS RI QEYESL  DYVQMKVDYDLQ RDFQVL
Sbjct: 229 MAECSEEYEILKNYVESLHYQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVL 288

Query: 61  VERVD 65
           VERVD
Sbjct: 289 VERVD 293

[Close]
BLAST of MELO3C034086.jh1 vs. NCBI nr
Match: KAA0036956.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 2.80e-26
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 1  MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVL 60
          MA+ S+EY+I KNYAD LHYQLTA QNSS+RI QEYESL  DYVQMKVDYDL  RDFQVL
Sbjct: 21 MAERSEEYEILKNYADFLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLHTRDFQVL 80

Query: 61 VERVD 65
          VERVD
Sbjct: 81 VERVD 85

[Close]
BLAST of MELO3C034086.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BYW3 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 6.17e-30
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 1  MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVL 60
          MA+CS+EY+I KNYADSLHYQLTA QNSS RI QEYESL  DYVQMKVDYDLQ RDFQVL
Sbjct: 21 MAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVL 80

Query: 61 VERVD 65
          VERVD
Sbjct: 81 VERVD 85

[Close]
BLAST of MELO3C034086.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UX37 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 1.89e-28
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 0 

Query: 1   MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVL 60
           MA+CS+EY+I KNYADSLHYQLTA QNSS RI QEYESL +DYVQMKVDYD++ RDFQVL
Sbjct: 112 MAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLNIDYVQMKVDYDMETRDFQVL 171

Query: 61  VERVD 65
           VERVD
Sbjct: 172 VERVD 176

[Close]
BLAST of MELO3C034086.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T8J1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002800 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 8.26e-28
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 1  MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVL 60
          MA+CS+EY+I KNYADSLHYQLTA QNSS RI QEYESL  D VQMK+DYDL+ RDFQVL
Sbjct: 21 MAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLNTDNVQMKIDYDLRTRDFQVL 80

Query: 61 VERVD 65
          VERVD
Sbjct: 81 VERVD 85

[Close]
BLAST of MELO3C034086.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V9X6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 PE=4 SV=1)

HSP 1 Score: 108 bits (270), Expect = 9.91e-27
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 1   MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVL 60
           MA+CS+EY+I KNY +SLHYQLTA QNSS RI QEYESL  DYVQMKVDYDLQ RDFQVL
Sbjct: 229 MAECSEEYEILKNYVESLHYQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVL 288

Query: 61  VERVD 65
           VERVD
Sbjct: 289 VERVD 293

[Close]
BLAST of MELO3C034086.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T4A6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00360 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 1.35e-26
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 1  MAKCSKEYKIPKNYADSLHYQLTAFQNSSERIVQEYESLKMDYVQMKVDYDLQMRDFQVL 60
          MA+ S+EY+I KNYAD LHYQLTA QNSS+RI QEYESL  DYVQMKVDYDL  RDFQVL
Sbjct: 21 MAERSEEYEILKNYADFLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLHTRDFQVL 80

Query: 61 VERVD 65
          VERVD
Sbjct: 81 VERVD 85

The following BLAST results are available for this feature:
BLAST of MELO3C034086.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK04062.11.27e-2984.62girdin-like [Cucumis melo var. makuwa][more]
KAA0060422.13.91e-2881.54girdin-like [Cucumis melo var. makuwa][more]
KAA0037619.11.71e-2780.00girdin-like [Cucumis melo var. makuwa][more]
KAA0062685.12.05e-2681.54girdin-like [Cucumis melo var. makuwa][more]
KAA0036956.12.80e-2680.00girdin-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C034086.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034086.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BYW36.17e-3084.62Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 P... [more]
A0A5A7UX371.89e-2881.54Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE... [more]
A0A5A7T8J18.26e-2880.00Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002800 P... [more]
A0A5A7V9X69.91e-2781.54Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 P... [more]
A0A5A7T4A61.35e-2680.00Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00360 PE=... [more]
BLAST of MELO3C034086.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034086.jh1.t1MELO3C034086.jh1.t1mRNA