MELO3C034082 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034082
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Girdin-like
Location	chr09: 4827270 .. 4827984 (-)
RNA-Seq Expression	MELO3C034082
Synteny	MELO3C034082

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCTGACTTTTCATACGATCCTGAAGATTGTTAAAGGAAAAAACGTCGAGCAGTATGTGCATGGAGATCTGTAAGGAAGATAAAAGACAAAGAACATTACGAAGGAGTTATTAGTGGATACGAGGCATGACAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAGAGTATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAACGAACTCAAAAAGACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGAATCTTGTGACGTTAAATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACTAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAACAAAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAGCCTACATCTGAAGATGGCCAAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTGCTTACACTATCAACTTACTGCATTTCA

mRNA sequence

AGTCTGACTTTTCATACGATCCTGAAGATTGTTAAAGGAAAAAACGTCGAGCAGTATGTGCATGGAGATCTGTAAGGAAGATAAAAGACAAAGAACATTACGAAGGAGTTATTAGTGGATACGAGGCATGACAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAGAGTATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAACGAACTCAAAAAGACTAAGAGTTTCTTAAAAAATCAAGATAAGTTTGAAAAATGAAAAGACAACATTACTAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAACAAAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAGCCTACATCTGAAGATGGCCAAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTGCTTACACTATCAACTTACTGCATTTCA

Coding sequence (CDS)

ATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAGCCTACATCTGAAGATGGCCAAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTGCTTACACTATCAACTTACTGCATTT

Protein sequence

MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTAF

Homology

[Close]

BLAST of MELO3C034082 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 6.3e-13
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTA 45
           MDLEA NHSLRQTVD+LHLKMA+RSEEYEILKNYVD LHYQLTA
Sbjct: 234 MDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTA 277

[Close]

BLAST of MELO3C034082 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTA 45
           MDLEA NHSL QTVDSLHLKMA+RSEEYEILKNYVD LHYQLTA
Sbjct: 186 MDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTA 229

[Close]

BLAST of MELO3C034082 vs. NCBI nr
Match: KAA0034022.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTAF 46
          M+LEAHNHSL QTVDSLHLKMA+R EEYEILKNYVD LHYQLT F
Sbjct: 1  MNLEAHNHSLHQTVDSLHLKMAERFEEYEILKNYVDSLHYQLTTF 45

[Close]

BLAST of MELO3C034082 vs. NCBI nr
Match: TYK23955.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 2.4e-12
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTAF 46
           MDLEAHNHSLRQ VDSLHLKM +RSEEYEILKNY D LHYQL AF
Sbjct: 317 MDLEAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAF 361

[Close]

BLAST of MELO3C034082 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 2.4e-12
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTAF 46
           MDLEAHNHSLRQ VDSLHLKM +RSEEYEILKNY D LHYQL AF
Sbjct: 243 MDLEAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAF 287

[Close]

BLAST of MELO3C034082 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-13
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTA 45
           MDLEA NHSLRQTVD+LHLKMA+RSEEYEILKNYVD LHYQLTA
Sbjct: 234 MDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTA 277

[Close]

BLAST of MELO3C034082 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-13
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTA 45
           MDLEA NHSL QTVDSLHLKMA+RSEEYEILKNYVD LHYQLTA
Sbjct: 186 MDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTA 229

[Close]

BLAST of MELO3C034082 vs. ExPASy TrEMBL
Match: A0A5A7SS95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00050 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.8e-13
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTAF 46
          M+LEAHNHSL QTVDSLHLKMA+R EEYEILKNYVD LHYQLT F
Sbjct: 1  MNLEAHNHSLHQTVDSLHLKMAERFEEYEILKNYVDSLHYQLTTF 45

[Close]

BLAST of MELO3C034082 vs. ExPASy TrEMBL
Match: A0A5D3DK34 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTAF 46
           MDLEAHNHSLRQ VDSLHLKM +RSEEYEILKNY D LHYQL AF
Sbjct: 317 MDLEAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAF 361

[Close]

BLAST of MELO3C034082 vs. ExPASy TrEMBL
Match: A0A1S4DX26 (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   MDLEAHNHSLRQTVDSLHLKMAKRSEEYEILKNYVDCLHYQLTAF 46
           MDLEAHNHSLRQ VDSLHLKM +RSEEYEILKNY D LHYQL AF
Sbjct: 243 MDLEAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAF 287

The following BLAST results are available for this feature:

BLAST of MELO3C034082 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18656.1	6.3e-13	90.91	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23632.1	1.1e-12	90.91	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0034022.1	1.4e-12	86.67	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23955.1	2.4e-12	86.67	girdin-like [Cucumis melo var. makuwa]	[more]
XP_016900531.1	2.4e-12	86.67	PREDICTED: girdin-like [Cucumis melo]	[more]

BLAST of MELO3C034082 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D533	3.1e-13	90.91	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE...	[more]
A0A5D3DJ95	5.2e-13	90.91	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]
A0A5A7SS95	6.8e-13	86.67	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00050 PE=...	[more]
A0A5D3DK34	1.2e-12	86.67	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE...	[more]
A0A1S4DX26	1.2e-12	86.67	girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1	[more]

BLAST of MELO3C034082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034082.1	MELO3C034082.1	mRNA