MELO3C034058 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034058
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PMD domain-containing protein
Location	chr07: 19115759 .. 19116815 (+)
RNA-Seq Expression	MELO3C034058
Synteny	MELO3C034058

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGGCGAATTATCCATTTCTTTATGGGACCTCTGGTCCTTTGGGGGTCTTCCCATTAAGGGAGATCTCTACGAGGAAAGGATCCCTTCTTTTAAGGAATTGACCTCTTCGTGAGATCTTCGACATCCTGTCAATATCTTTTCTAGGCGTATTATTCAATAGTTTATACGCAGAGGAAGAATTACATGACATCCTCTAAGAATGACTCCAAGTGACTATTAGCTCCTGAATTTTGTTTTGGTACCTTGGGTCTAGATGCTATGATAAACCAACCACACGGAAACAAAAGAAGGCGTCACGCTCCAAATCTACCCAGAACCCTGATGGTTCGAAGATCTAGGCTCGTGAATGGTCCTCTAGGGAGAACATGTTATTTGCGAAACTCGGAATCAGGAACGATCTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGCTGGTTATGCCTTTTCGTATTTCCACATAAAGGATCATTTCTTCGCCCCAGAGTATTTATGGCTGCAAGCTTAATGGCCACTGGCACTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATATCATGGGCTAGGTTTGATAACCAAAGCCTCCAATTCGATAGGATGCATGGACTTTCACTTTCCCATGCATTACGTCTATGGCTGGTTAGCACATTATTTTGGCACGCATTATTCACTTTCCATAGAAGTTCGAGGCTCCAAGATGACTAACTTTTCCAGCGAAGGTGGGTCTATTTATTTTGGCGAATATAAGGCGTGAGAACTGATCCATAATGGTGCAAGAATTCAGTGGCACGCTAACCTCTAGAACAGGAATAAACATGAACGCATGGTTGATACCCATGATTCAACATTTCTGCAGACTTCTTATTTCGTGAGCATGCATTCCTGCTACTTGTCCTCTCGCTATGGAAATACCTGGATCATAACATCATATAGTCTGTATTGATTTGGACGACAATTTGACTTTTACCAGGATATCCCTAATGATATAGAGGACATGCCACTTGCGATCACACCAGATAATATGTCACATCAGTGGAGAATATGT

mRNA sequence

ATGCTGGGCGAATTATCCATTTCTTTATGGGACCTCTGGTCCTTTGGGGGTCTTCCCATTAAGGGAGATCTCTACGAGGAAAGGATCCCTTCTTTTAAGGAATTGACCTCTTCGTGAGATCTTCGACATCCTGTCAATATCTTTTCTAGGCGTATTATTCAATAGTTTATACGCAGAGGAAGAATTACATGACATCCTCTAAGAATGACTCCAAGTGACTATTAGCTCCTGAATTTTGTTTTGGTACCTTGGGTCTAGATGCTATGATAAACCAACCACACGGAAACAAAAGAAGGCGTCACGCTCCAAATCTACCCAGAACCCTGATGGTTCGAAGATCTAGGCTCGTGAATGGTCCTCTAGGGAGAACATGTTATTTGCGAAACTCGGAATCAGGAACGATCTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGCTGGTTATGCCTTTTCGTATTTCCACATAAAGGATCATTTCTTCGCCCCAGAGTATTTATGGCTGCAAGCTTAATGGCCACTGGCACTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATATCATGGGCTAGGTTTGATAACCAAAGCCTCCAATTCGATAGGATGCATGGACTTTCACTTTCCCATGCATTACGTCTATGGCTGGTTAGCACATTATTTTGGCACGCATTATTCACTTTCCATAGAAGTTCGAGGCTCCAAGATGACTAACTTTTCCAGCGAAGGTGGGTCTATTTATTTTGGCGAATATAAGGCGTGAGAACTGATCCATAATGGTGCAAGAATTCAGTGGCACGCTAACCTCTAGAACAGGAATAAACATGAACGCATGGTTGATACCCATGATTCAACATTTCTGCAGACTTCTTATTTCGTGAGCATGCATTCCTGCTACTTGTCCTCTCGCTATGGAAATACCTGGATCATAACATCATATAGTCTGTATTGATTTGGACGACAATTTGACTTTTACCAGGATATCCCTAATGATATAGAGGACATGCCACATCAGTGGAGAATATGT

Coding sequence (CDS)

ATGTTATTTGCGAAACTCGGAATCAGGAACGATCTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGCTGGTTATGCCTTTTCGTATTTCCACATAAAGGATCATTTCTTCGCCCCAGAGTATTTATGGCTGCAAGCTTAATGGCCACTGGCACTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATATCATGGGCTAGGTTTGATAACCAAAGCCTCCAATTCGATAGGATGCATGGACTTTCACTTTCCCATGCATTACGTCTATGGCTGGTTAGCACATTATTTTGGCACGCATTATTCACTTTCCATAGAAGTTCGAGGCTCCAAGATGACTAACTTTTCCAGCGAAGGTGGGTCTATTTATTTTGGCGAATATAAGGCGTGA

Protein sequence

MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVPVLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSEGGSIYFGEYKA

Homology

[Close]

BLAST of MELO3C034058 vs. NCBI nr
Match: TYK06278.1 (hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 114/131 (87.02%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVP 60
           MLFA+LGI++DLKDETYLAAFLSCWLCLFVFP KGSFLRP VF AASLMA  TIYSLAVP
Sbjct: 255 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVP 314

Query: 61  VLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSE 120
           VLANIYHGLGLITKASN IG MDFHFPMHYV+GWLAHYFGTHY L  EVRG KMTNFS E
Sbjct: 315 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 374

Query: 121 GGSIYFGEYKA 132
           GGSIYFGEY+A
Sbjct: 375 GGSIYFGEYEA 385

[Close]

BLAST of MELO3C034058 vs. NCBI nr
Match: KAA0047546.1 (hypothetical protein E6C27_scaffold2963G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 114/131 (87.02%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVP 60
           MLFA+LGI++DLKDETYLAAFLSCWLCLFVFP KGSFLRP VF AASLMA  TIYSLAVP
Sbjct: 225 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVP 284

Query: 61  VLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSE 120
           VLANIYHGLGLITKASN IG MDFHFPMHYV+GWLAHYFGTHY L  EVRG KMTNFS E
Sbjct: 285 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 344

Query: 121 GGSIYFGEYKA 132
           GGSIYFGEY+A
Sbjct: 345 GGSIYFGEYEA 355

[Close]

BLAST of MELO3C034058 vs. NCBI nr
Match: KAA0050333.1 (hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 2.9e-58
Identity = 114/131 (87.02%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVP 60
           MLFA+LG+R+DLKDETYLAAFLS WL LFVFPHKGSFLRP VF  ASLMATGTIYSLAVP
Sbjct: 154 MLFAELGVRDDLKDETYLAAFLSYWLFLFVFPHKGSFLRPEVFRVASLMATGTIYSLAVP 213

Query: 61  VLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSE 120
           VLANIYHGLGLITKASN IG MDFHFPMHYV+GWLAHYFGTHY L  EVRG KMTNFS E
Sbjct: 214 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 273

Query: 121 GGSIYFGEYKA 132
           GGSIYFGEY+A
Sbjct: 274 GGSIYFGEYEA 284

[Close]

BLAST of MELO3C034058 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 2.9e-58
Identity = 113/131 (86.26%), Postives = 118/131 (90.08%), Query Frame = 0


Query: 1   MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVP 60
           MLFA+LGI++DLKDETYLAAFLSCWLCLFVFP KGSFLRP VF AASLM  GTIYSLAVP
Sbjct: 300 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMTAGTIYSLAVP 359

Query: 61  VLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSE 120
           VLANIYHGLGLITKASN  G MDFHFPMHYV+GWLAHYFGTHY L  EVRG KMTNFS E
Sbjct: 360 VLANIYHGLGLITKASNPTGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 419

Query: 121 GGSIYFGEYKA 132
           GGSIYFGEY+A
Sbjct: 420 GGSIYFGEYEA 430

[Close]

BLAST of MELO3C034058 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 3.8e-58
Identity = 113/131 (86.26%), Postives = 118/131 (90.08%), Query Frame = 0


Query: 1   MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVP 60
           MLFA+LGIR+DLKDETYLAAFLSCWLCLFVFP KGSFLRP VF  ASLM  GTIYSLAVP
Sbjct: 130 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPKKGSFLRPEVFRVASLMVAGTIYSLAVP 189

Query: 61  VLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSE 120
           VLANIYHGLGLITKASN IG MDFHFPMHYV+GWLAHYFGTHY L  EVRG KMTNFS E
Sbjct: 190 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPREVRGPKMTNFSGE 249

Query: 121 GGSIYFGEYKA 132
           GGSIYFG+Y+A
Sbjct: 250 GGSIYFGKYEA 260

[Close]

BLAST of MELO3C034058 vs. ExPASy TrEMBL
Match: A0A5A7TZZ9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2963G00230 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.3e-59
Identity = 114/131 (87.02%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVP 60
           MLFA+LGI++DLKDETYLAAFLSCWLCLFVFP KGSFLRP VF AASLMA  TIYSLAVP
Sbjct: 225 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVP 284

Query: 61  VLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSE 120
           VLANIYHGLGLITKASN IG MDFHFPMHYV+GWLAHYFGTHY L  EVRG KMTNFS E
Sbjct: 285 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 344

Query: 121 GGSIYFGEYKA 132
           GGSIYFGEY+A
Sbjct: 345 GGSIYFGEYEA 355

[Close]

BLAST of MELO3C034058 vs. ExPASy TrEMBL
Match: A0A5D3C543 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00620 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.3e-59
Identity = 114/131 (87.02%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVP 60
           MLFA+LGI++DLKDETYLAAFLSCWLCLFVFP KGSFLRP VF AASLMA  TIYSLAVP
Sbjct: 255 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVP 314

Query: 61  VLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSE 120
           VLANIYHGLGLITKASN IG MDFHFPMHYV+GWLAHYFGTHY L  EVRG KMTNFS E
Sbjct: 315 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 374

Query: 121 GGSIYFGEYKA 132
           GGSIYFGEY+A
Sbjct: 375 GGSIYFGEYEA 385

[Close]

BLAST of MELO3C034058 vs. ExPASy TrEMBL
Match: A0A5A7U349 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00590 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 114/131 (87.02%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVP 60
           MLFA+LG+R+DLKDETYLAAFLS WL LFVFPHKGSFLRP VF  ASLMATGTIYSLAVP
Sbjct: 154 MLFAELGVRDDLKDETYLAAFLSYWLFLFVFPHKGSFLRPEVFRVASLMATGTIYSLAVP 213

Query: 61  VLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSE 120
           VLANIYHGLGLITKASN IG MDFHFPMHYV+GWLAHYFGTHY L  EVRG KMTNFS E
Sbjct: 214 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 273

Query: 121 GGSIYFGEYKA 132
           GGSIYFGEY+A
Sbjct: 274 GGSIYFGEYEA 284

[Close]

BLAST of MELO3C034058 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 113/131 (86.26%), Postives = 118/131 (90.08%), Query Frame = 0


Query: 1   MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVP 60
           MLFA+LGI++DLKDETYLAAFLSCWLCLFVFP KGSFLRP VF AASLM  GTIYSLAVP
Sbjct: 300 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMTAGTIYSLAVP 359

Query: 61  VLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSE 120
           VLANIYHGLGLITKASN  G MDFHFPMHYV+GWLAHYFGTHY L  EVRG KMTNFS E
Sbjct: 360 VLANIYHGLGLITKASNPTGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 419

Query: 121 GGSIYFGEYKA 132
           GGSIYFGEY+A
Sbjct: 420 GGSIYFGEYEA 430

[Close]

BLAST of MELO3C034058 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58
Identity = 113/131 (86.26%), Postives = 118/131 (90.08%), Query Frame = 0


Query: 1   MLFAKLGIRNDLKDETYLAAFLSCWLCLFVFPHKGSFLRPRVFMAASLMATGTIYSLAVP 60
           MLFA+LGIR+DLKDETYLAAFLSCWLCLFVFP KGSFLRP VF  ASLM  GTIYSLAVP
Sbjct: 130 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPKKGSFLRPEVFRVASLMVAGTIYSLAVP 189

Query: 61  VLANIYHGLGLITKASNSIGCMDFHFPMHYVYGWLAHYFGTHYSLSIEVRGSKMTNFSSE 120
           VLANIYHGLGLITKASN IG MDFHFPMHYV+GWLAHYFGTHY L  EVRG KMTNFS E
Sbjct: 190 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPREVRGPKMTNFSGE 249

Query: 121 GGSIYFGEYKA 132
           GGSIYFG+Y+A
Sbjct: 250 GGSIYFGKYEA 260

The following BLAST results are available for this feature:

BLAST of MELO3C034058 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06278.1	1.7e-58	87.02	hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa]	[more]
KAA0047546.1	1.7e-58	87.02	hypothetical protein E6C27_scaffold2963G00230 [Cucumis melo var. makuwa]	[more]
KAA0050333.1	2.9e-58	87.02	hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa]	[more]
KAA0065375.1	2.9e-58	86.26	hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	3.8e-58	86.26	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034058 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZZ9	8.3e-59	87.02	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3C543	8.3e-59	87.02	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U349	1.4e-58	87.02	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7VHW8	1.4e-58	86.26	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVI5	1.8e-58	86.26	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of MELO3C034058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019557	Aminotransferase-like, plant mobile domain	PFAM	PF10536	PMD	coord: 14..99 e-value: 1.3E-10 score: 41.0
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 9..128
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 9..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034058.1	MELO3C034058.1	mRNA