MELO3C034020.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C034020.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	zf-RVT domain-containing protein
Location	chr10: 119597 .. 119893 (-)
RNA-Seq Expression	MELO3C034020.jh1
Synteny	MELO3C034020.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGCAAGAACAATTGTAGCTTGAGAAGCCCTTGGATTAGCATTTCAAGAGCATGGAGGAAAGTGGAAGTGCTGGCCACTTTTAATATTGGAAATGGAAGAAGAATAGGGTTTTGGGGAGACCCTTGGTTTGAAAAGGTTGCATTAAAACTGCAATTTCTGAAACTTTTTAGAATTGCTTTATCGCCGAAAGGCTCGATAGAAGATCATTGGGATTCCATCACACAATCTTGGGCTTTACTGTTCAGAAGAATGGGGAAAGTGGAAGTGCTGGCTGAAAGACTAAAATGGTAA

mRNA sequence

ATGGTTGGCAAGAACAATTGTAGCTTGAGAAGCCCTTGGATTAGCATTTCAAGAGCATGGAGGAAAGTGGAAGTGCTGGCCACTTTTAATATTGGAAATGGAAGAAGAATAGGGTTTTGGGGAGACCCTTGGTTTGAAAAGGTTGCATTAAAACTGCAATTTCTGAAACTTTTTAGAATTGCTTTATCGCCGAAAGGCTCGATAGAAGATCATTGGGATTCCATCACACAATCTTGGGCTTTACTGTTCAGAAGAATGGGGAAAGTGGAAGTGCTGGCTGAAAGACTAAAATGGTAA

Coding sequence (CDS)

ATGGTTGGCAAGAACAATTGTAGCTTGAGAAGCCCTTGGATTAGCATTTCAAGAGCATGGAGGAAAGTGGAAGTGCTGGCCACTTTTAATATTGGAAATGGAAGAAGAATAGGGTTTTGGGGAGACCCTTGGTTTGAAAAGGTTGCATTAAAACTGCAATTTCTGAAACTTTTTAGAATTGCTTTATCGCCGAAAGGCTCGATAGAAGATCATTGGGATTCCATCACACAATCTTGGGCTTTACTGTTCAGAAGAATGGGGAAAGTGGAAGTGCTGGCTGAAAGACTAAAATGGTAA

Protein sequence

MVGKNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRIALSPKGSIEDHWDSITQSWALLFRRMGKVEVLAERLKW

Homology

[Close]

BLAST of MELO3C034020.jh1 vs. NCBI nr
Match: TYK22579.1 (hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 6.08e-32
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 4   KNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRIALS 63
           K+  SLRSPW+SISR W+KVE+LA F +GNGRR+ FW D W  ++ LK Q  KLF+IAL 
Sbjct: 28  KSGNSLRSPWVSISREWKKVEILAPFKLGNGRRVAFWADSWAREIPLKTQNSKLFKIALL 87

Query: 64  PKGSIEDHWDSITQSWALLFRRMGKVEVLAE 94
           P GS+  HWDS T SWA++FRR+ K E + +
Sbjct: 88  PIGSVAAHWDSDTNSWAIVFRRLLKDEEIQD 118

[Close]

BLAST of MELO3C034020.jh1 vs. NCBI nr
Match: KAA0032570.1 (protein SAND [Cucumis melo var. makuwa] >TYK20915.1 protein SAND [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 1.58e-28
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 3   GKNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRIAL 62
           GK + SLRSPWISISR  RKVE+LA F +G G RI FW DPW   +AL ++F +L+RIAL
Sbjct: 261 GKESSSLRSPWISISRQQRKVEILAVFKVGKGDRILFWLDPWMNSIALWIKFPRLYRIAL 320

Query: 63  SPKGSIEDHWDSITQSWALLFRRMGKVEVLAE 94
            PKGS+ ++WDS + SW+++FR + K E +++
Sbjct: 321 PPKGSVTNYWDSSSSSWSIIFRCLLKEEEISD 352

[Close]

BLAST of MELO3C034020.jh1 vs. NCBI nr
Match: TYK28319.1 (uncharacterized protein E5676_scaffold600G001450 [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (291), Expect = 2.96e-28
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 3   GKNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRIAL 62
           GK N  LRS WISISR WRK+E LATF IGNG R+ FW DPW + + L  +  +L  IAL
Sbjct: 368 GKENSCLRSSWISISREWRKIEALATFRIGNGSRVYFWTDPWLDNIPLNNKSPRLSHIAL 427

Query: 63  SPKGSIEDHWDSITQSWALLFRRMGKVEVL 92
            PKGSI  HWDS T SWA+  RR+ K E L
Sbjct: 428 LPKGSISKHWDSQTSSWAVYLRRLMKEEGL 457

[Close]

BLAST of MELO3C034020.jh1 vs. NCBI nr
Match: TYJ99817.1 (uncharacterized protein E5676_scaffold446G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (281), Expect = 1.96e-26
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 1  MVGKNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRI 60
          M GK+  SLRSP +SISRAWRKVE LA F + NGRRIGFW D W     L +QF KLFRI
Sbjct: 1  MSGKSRNSLRSPRVSISRAWRKVESLALFRLSNGRRIGFWTDTWIGVSPLNVQFPKLFRI 60

Query: 61 ALSPKGSIEDHWDSITQSWALL 82
          AL P+GS+  HWDS T SW+L+
Sbjct: 61 ALLPRGSVAAHWDSSTLSWSLV 82

[Close]

BLAST of MELO3C034020.jh1 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 108 bits (269), Expect = 7.25e-26
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MVGKNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRI 60
          M GK   SL+SPW+SIS+ W KVE+LATF +GNG RI FW D W       + F  LFRI
Sbjct: 1  MTGKGGRSLKSPWVSISKTWLKVEILATFKLGNGSRIAFWLDTWEGHSPFNILFSSLFRI 60

Query: 61 ALSPKGSIEDHWDSITQSWALLFRRMGKVE 90
             P GS+ DHWD+   SW++ FRR  K E
Sbjct: 61 TTLPNGSVADHWDNNIASWSITFRRSLKDE 90

[Close]

BLAST of MELO3C034020.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DH32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold584G00340 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 2.94e-32
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 4   KNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRIALS 63
           K+  SLRSPW+SISR W+KVE+LA F +GNGRR+ FW D W  ++ LK Q  KLF+IAL 
Sbjct: 28  KSGNSLRSPWVSISREWKKVEILAPFKLGNGRRVAFWADSWAREIPLKTQNSKLFKIALL 87

Query: 64  PKGSIEDHWDSITQSWALLFRRMGKVEVLAE 94
           P GS+  HWDS T SWA++FRR+ K E + +
Sbjct: 88  PIGSVAAHWDSDTNSWAIVFRRLLKDEEIQD 118

[Close]

BLAST of MELO3C034020.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SP09 (Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00570 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 7.63e-29
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 3   GKNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRIAL 62
           GK + SLRSPWISISR  RKVE+LA F +G G RI FW DPW   +AL ++F +L+RIAL
Sbjct: 261 GKESSSLRSPWISISRQQRKVEILAVFKVGKGDRILFWLDPWMNSIALWIKFPRLYRIAL 320

Query: 63  SPKGSIEDHWDSITQSWALLFRRMGKVEVLAE 94
            PKGS+ ++WDS + SW+++FR + K E +++
Sbjct: 321 PPKGSVTNYWDSSSSSWSIIFRCLLKEEEISD 352

[Close]

BLAST of MELO3C034020.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DY86 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001450 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.43e-28
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 3   GKNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRIAL 62
           GK N  LRS WISISR WRK+E LATF IGNG R+ FW DPW + + L  +  +L  IAL
Sbjct: 368 GKENSCLRSSWISISREWRKIEALATFRIGNGSRVYFWTDPWLDNIPLNNKSPRLSHIAL 427

Query: 63  SPKGSIEDHWDSITQSWALLFRRMGKVEVL 92
            PKGSI  HWDS T SWA+  RR+ K E L
Sbjct: 428 LPKGSISKHWDSQTSSWAVYLRRLMKEEGL 457

[Close]

BLAST of MELO3C034020.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BL11 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00190 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 9.51e-27
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 1  MVGKNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRI 60
          M GK+  SLRSP +SISRAWRKVE LA F + NGRRIGFW D W     L +QF KLFRI
Sbjct: 1  MSGKSRNSLRSPRVSISRAWRKVESLALFRLSNGRRIGFWTDTWIGVSPLNVQFPKLFRI 60

Query: 61 ALSPKGSIEDHWDSITQSWALL 82
          AL P+GS+  HWDS T SW+L+
Sbjct: 61 ALLPRGSVAAHWDSSTLSWSLV 82

[Close]

BLAST of MELO3C034020.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C5F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00250 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 2.62e-25
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 2   VGKNNCSLRSPWISISRAWRKVEVLATFNIGNGRRIGFWGDPWFEKVALKLQFLKLFRIA 61
           +GK   SL+SPWI IS   RK+E L +F +GNG RI FW D W E+ + +  F  LFR++
Sbjct: 98  IGKFGNSLKSPWIGISMVRRKLETLTSFKLGNGNRIAFWSDVWVEETSFRTCFSMLFRVS 157

Query: 62  LSPKGSIEDHWDSITQSWALLFRRMGKVEVLAE 94
           L P GS+   WD+ T SW+++FRR+ K E ++E
Sbjct: 158 LMPNGSVAALWDNSTLSWSIMFRRLFKEEEISE 190

The following BLAST results are available for this feature:

BLAST of MELO3C034020.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22579.1	6.08e-32	57.14	hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa]	[more]
KAA0032570.1	1.58e-28	54.35	protein SAND [Cucumis melo var. makuwa] >TYK20915.1 protein SAND [Cucumis melo v...	[more]
TYK28319.1	2.96e-28	58.89	uncharacterized protein E5676_scaffold600G001450 [Cucumis melo var. makuwa]	[more]
TYJ99817.1	1.96e-26	63.41	uncharacterized protein E5676_scaffold446G00190 [Cucumis melo var. makuwa]	[more]
XP_038903695.1	7.25e-26	52.22	uncharacterized protein LOC120090219 [Benincasa hispida]	[more]

BLAST of MELO3C034020.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034020.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DH32	2.94e-32	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SP09	7.63e-29	54.35	Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DY86	1.43e-28	58.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BL11	9.51e-27	63.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C5F2	2.62e-25	47.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C034020.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36617	PROTEIN, PUTATIVE-RELATED	coord: 10..85
None	No IPR available	PANTHER	PTHR36617:SF4	SUBFAMILY NOT NAMED	coord: 10..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034020.jh1.t1	MELO3C034020.jh1.t1	mRNA