MELO3C033968 (gene) Melon (DHL92) v4

Overview
NameMELO3C033968
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein FAR1-RELATED SEQUENCE 3-like
Locationchr09: 17569822 .. 17572566 (+)
RNA-Seq ExpressionMELO3C033968
SyntenyMELO3C033968
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAGAGCTTCATCGCAGGAAATTAATTCAATTTCTTCAACAATTCCATCCGCCTTCATGTACATCCGGTTAGTTCTCTTCCTCAATTCCTTATATGTTTTGTACTCCATTAAATCATAGTATTCCTAGAACGTCTAACGTTATATTTCCGAAGATATATTTTAGACATATAAGTTGAGATACAGTAGTTATTTATCTTATCTGATTTTGTAAATATATACCCCTTCATATTTCTAATAATATACATAAATTGTCATACATTTATTGACAAATATGATCGGTTTATTATCTTCTTATTTAGATATATACCCCTTCTTATTTACCATGATACATACATTTGGACATCCAGCGATAGTCACATATATTTGTAATATATTTATCAGGATGACAAGAATTGCAATCTACTTCGATGGTTTTTTCGATGAATCACACAATTAAATTAGTTTTAGTGTTTTCGAGATTACAGCTAATGAACATATGTGTTATAAAGAATTGTATACTAGCCTTATATCCAAGTTAGATAGTATTATTGATATGAACGATATTGATATATACCTTTGCCTAGGTCTTATAGAATGTGTTAAGAAGGATTTGGCTATAACGAATGATAATGATGTTAAATGAGTTTACCATATAATAACATCGAATGTTGAGCGTCATATTGCCCTTATTGTTCATTATGTTGGCCCTTTATCTATTTGTTTGGATTCATCGTCATCGAGTTTTTTTCAAACTTAAATCCATGATGATGTGGGTCATTTTTTTTGAAAACATAGATATGTCTAAGGTAGATTCCAACTTTGCACTAAAAGTGCAGAATATGTTTTCAACCAAATCTTTGTTCAAACAGTGCGTACAAGTCATTGATTTTAGAGACAATTTTCAATACGTTATTGTAAAATCAAACAACGAAGTTATGATTTTGCAATGCGCCATTGAAAATTGCAAATGGTCCTTGCATGCTTCTTGTTGTATTCATGGGGATAGGACATTATAAGTTCTTGCTAGGTTTGATTCTGAACATACATGTTCAGTAAATGTTCTATTAACAGATCATAGACAGGTCACCTTTACTGTTATCAAGAACTTAATTAAGAACAAAATATCTTTAGCTGATTCTGAATTGTTAACTCCCAAAGATATAGTTCATTACATTCATACTGAACATGGTTTAAGTATATCTTACCAAAAAGCATGGCGTGCTCGTGAGGCTGCATTGGATGATATATGCGGATCTCTTGAGGACTCCTATAAGATGCTACCCCAATTTGCATACATATTGGATCTCACCAATCCAGGTATATTAGAAATATACTTAGTCATTTATTTCATAAATTTTATGTCATAACATGTTTTCATCATATGTATAAACTTTTTTATGTTGATAGGTTATGTTGCTGAATACAAAATTAATGTCGATGGTAGATTTCTTTACTTTTTCATGGCATTATTTGCTTCCATTTCTGGTTGGCAACATTGTCGTCCAGTCATTTCTATTGATGGAACAAGTATGAAGAATAAGTATGATGGTACTCTGTTATCTGCTTCAACACTTGATGCCAATGATCAGATTTTTCCACTAGCCTTTTATGTTGTGGATTCTGAGAATGATTCCTCGTAGACCTGGTTTTGCAACCAATTGAAGATAATTATAAGTGGCTGGAATGGGGTTGTCATAGTATCTGATAGGCATAAAAGTAAATACAAAGCCATAGAGGTAGTATTTCCTAACATTTTATATTGCATGTGTCTTGTTCATTTACTTAGGAACCTGAAGTTGAAATATAAAAGAATAGTCGATACCGTATTTCATGCATGTGGGAAGGCTTTTAATATTGTAGACTTCGAACACGAAATGGGTTTGATGGAATCTTTTACCCCTGGTATACGTGAGGAGCTTGAATCCATTGGTTTTGTTAAGTGGTTTTTGCCTACTCACCACGTAGGAGATATAATGTCATGACCACTAATATATCTGAGAGTTTGAATTCTGCTATGTTGAAGGCTAGAGAGTTATCAATATGTTCAATGTTTGAGGTTTTGCGAATGATGTTGCAAAGATGGATTTTTGAACGAAGAAATGAAGCTGATTATCAAGTGACTGATTTTACCAAAACCATTGAAGGTATATTAAAGGAATAGAATGAACGTAGTCGATCAATGAAGATATGTTCAATTTATTTATACTTATGTATGCTTAATATATATCACCATATTTCATATATACATTATATATAATTCTTTTATATATTTGCAATGTAGATTGATCCGGTTAATAAAATGAAATACCAGGTCATAGATGGAACCTCCCAATATGTGATTTACTTATCTATGAAGGTTTGTAGTTGCAGGATGTAGGATATATTGGAAATACCTTATGTGCATGCATGTGTTGTTTTCACCATAAAACATTTACCAATTAAGTCATATGTCTCACTTCTTTACTTGAATAGCACTTTGAGTTCAATATATAGAAGTGTAATAAATCCCTTATGCGATCATCATCAATGACAAATACATGATGATATTATGTCCATTGTCATCCTTCCACCTAATGTAAAACGTGCAATTGGTCTACCGAAAAAGATTAGAATTCCTTCAAAAATAGAGTTTAAGAGACGTGTTAAATGTGGCCGTTGTGGATGTGTTGATCATAACTATGCATTGCATTGCATATACGTAATAATATTATTTTCCTTCGTTTTCTAGTTCAAACTTTGCATTGCAAAATCATATACGTAA

mRNA sequence

ATGCTCAGAGCTTCATCGCAGGAAATTAATTCAATTTCTTCAACAATTCCATCCGCCTTCATGTACATCCGGATGACAAGAATTGCAATCTACTTCGATGGTTATGTTGCTGAATACAAAATTAATGTCGATGACTTCGAACACGAAATGGGTTTGATGGAATCTTTTACCCCTGGTATACGTGAGGAGCTTGAATCCATTGGTTTTGTTAAGTGGTTTTTGCCTACTCACCACATTGATCCGGTTAATAAAATGAAATACCAGGTCATAGATGGAACCTCCCAATATGTGATTTACTTATCTATGAAGTTCAAACTTTGCATTGCAAAATCATATACGTAA

Coding sequence (CDS)

ATGCTCAGAGCTTCATCGCAGGAAATTAATTCAATTTCTTCAACAATTCCATCCGCCTTCATGTACATCCGGATGACAAGAATTGCAATCTACTTCGATGGTTATGTTGCTGAATACAAAATTAATGTCGATGACTTCGAACACGAAATGGGTTTGATGGAATCTTTTACCCCTGGTATACGTGAGGAGCTTGAATCCATTGGTTTTGTTAAGTGGTTTTTGCCTACTCACCACATTGATCCGGTTAATAAAATGAAATACCAGGTCATAGATGGAACCTCCCAATATGTGATTTACTTATCTATGAAGTTCAAACTTTGCATTGCAAAATCATATACGTAA

Protein sequence

MLRASSQEINSISSTIPSAFMYIRMTRIAIYFDGYVAEYKINVDDFEHEMGLMESFTPGIREELESIGFVKWFLPTHHIDPVNKMKYQVIDGTSQYVIYLSMKFKLCIAKSYT
Homology
[Close]
BLAST of MELO3C033968 vs. NCBI nr
Match: KAA0046937.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 42/109 (38.53%), Postives = 48/109 (44.04%), Query Frame = 0 

Query: 27  RIAIYFDGYVAEYKINVDDFEHEMGLMESFTPGIREELESIGFVKW-------------- 86
           R  I  DG   + K    DFEHEM L+ES   GIR+E ESI F KW              
Sbjct: 174 RPVISIDGISLKNKYG--DFEHEMRLLESSASGIRKEFESISFAKWSRAYSPRRRYNVMT 233

Query: 87  ------------------FLPTHHIDPVNKMKYQVIDGTSQYVIYLSMK 104
                               P   ++P+N MKYQV D TSQYVIYL  K
Sbjct: 234 TNIFESLNSTMLKARELSICPMLKVNPINNMKYQVRDVTSQYVIYLPTK 280

[Close]
BLAST of MELO3C033968 vs. NCBI nr
Match: KAA0062727.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 7.2e-05
Identity = 43/139 (30.94%), Postives = 51/139 (36.69%), Query Frame = 0 

Query: 42  NVDDFEHEMGLMESFTPGIREELESIGFVK------------------------------ 101
           N+ DFEHEM L+ES   GIRE++ESIGF K                              
Sbjct: 276 NIVDFEHEMHLLESSATGIREKIESIGFAKSSRTYSSRRRYNAMTTNISKSLNSDMLKAR 335

Query: 102 -----------------WFLPTHH----------------------------IDPVNKMK 106
                            WF    +                            ++PVNKMK
Sbjct: 336 ELPICSMLEILRMMLQRWFFERRNEADYQVTDFTKTIEGILREHIELSRSMKVNPVNKMK 395

[Close]
BLAST of MELO3C033968 vs. NCBI nr
Match: KAA0047452.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYJ98646.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 32  FDGYVAEYKINVDDFEHEMGLMESFTPGIREELESIGFVKWFLPTHHIDPVNKMKYQVI 91
           F  Y      N+ +FEHEM L+ES TPGIREELESI F KW   +H   P    KY V+
Sbjct: 123 FHAYACGKAFNIVNFEHEMRLLESSTPGIREELESISFAKW---SHAYSP--HKKYNVV 176

[Close]
BLAST of MELO3C033968 vs. NCBI nr
Match: XP_008465839.1 (PREDICTED: uncharacterized protein LOC103503433 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 32  FDGYVAEYKINVDDFEHEMGLMESFTPGIREELESIGFVKWFLPTHHIDPVNKMKYQVI 91
           F  Y      N+ +FEHEM L+ES TPGIREELESI F KW   +H   P    KY V+
Sbjct: 123 FHAYACGKAFNIVNFEHEMRLLESSTPGIREELESISFAKW---SHAYSP--HKKYNVV 176

[Close]
BLAST of MELO3C033968 vs. NCBI nr
Match: XP_008449188.1 (PREDICTED: uncharacterized protein LOC103491139 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-04
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 35  YVAEYKINVDDFEHEMGLMESFTPGIREELESIGFVKWF 74
           +V E   N+ DFEHEM  +ESF  GIRE+LESIGF KWF
Sbjct: 273 HVCEKAFNIIDFEHEMHWLESFAFGIREKLESIGFAKWF 311

[Close]
BLAST of MELO3C033968 vs. ExPASy TrEMBL
Match: A0A5A7TYE6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001070 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.3e-07
Identity = 42/109 (38.53%), Postives = 48/109 (44.04%), Query Frame = 0 

Query: 27  RIAIYFDGYVAEYKINVDDFEHEMGLMESFTPGIREELESIGFVKW-------------- 86
           R  I  DG   + K    DFEHEM L+ES   GIR+E ESI F KW              
Sbjct: 174 RPVISIDGISLKNKYG--DFEHEMRLLESSASGIRKEFESISFAKWSRAYSPRRRYNVMT 233

Query: 87  ------------------FLPTHHIDPVNKMKYQVIDGTSQYVIYLSMK 104
                               P   ++P+N MKYQV D TSQYVIYL  K
Sbjct: 234 TNIFESLNSTMLKARELSICPMLKVNPINNMKYQVRDVTSQYVIYLPTK 280

[Close]
BLAST of MELO3C033968 vs. ExPASy TrEMBL
Match: A0A5A7V6U1 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00560 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.5e-05
Identity = 43/139 (30.94%), Postives = 51/139 (36.69%), Query Frame = 0 

Query: 42  NVDDFEHEMGLMESFTPGIREELESIGFVK------------------------------ 101
           N+ DFEHEM L+ES   GIRE++ESIGF K                              
Sbjct: 276 NIVDFEHEMHLLESSATGIREKIESIGFAKSSRTYSSRRRYNAMTTNISKSLNSDMLKAR 335

Query: 102 -----------------WFLPTHH----------------------------IDPVNKMK 106
                            WF    +                            ++PVNKMK
Sbjct: 336 ELPICSMLEILRMMLQRWFFERRNEADYQVTDFTKTIEGILREHIELSRSMKVNPVNKMK 395

[Close]
BLAST of MELO3C033968 vs. ExPASy TrEMBL
Match: A0A5A7TVG0 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00310 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.9e-05
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 32  FDGYVAEYKINVDDFEHEMGLMESFTPGIREELESIGFVKWFLPTHHIDPVNKMKYQVI 91
           F  Y      N+ +FEHEM L+ES TPGIREELESI F KW   +H   P    KY V+
Sbjct: 123 FHAYACGKAFNIVNFEHEMRLLESSTPGIREELESISFAKW---SHAYSP--HKKYNVV 176

[Close]
BLAST of MELO3C033968 vs. ExPASy TrEMBL
Match: A0A1S3CPS6 (uncharacterized protein LOC103503433 OS=Cucumis melo OX=3656 GN=LOC103503433 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.9e-05
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 32  FDGYVAEYKINVDDFEHEMGLMESFTPGIREELESIGFVKWFLPTHHIDPVNKMKYQVI 91
           F  Y      N+ +FEHEM L+ES TPGIREELESI F KW   +H   P    KY V+
Sbjct: 123 FHAYACGKAFNIVNFEHEMRLLESSTPGIREELESISFAKW---SHAYSP--HKKYNVV 176

[Close]
BLAST of MELO3C033968 vs. ExPASy TrEMBL
Match: A0A1S3BFU6 (protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo OX=3656 GN=LOC103489535 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 42  NVDDFEHEMGLMESFTPGIREELESIGFVKW 73
           N+ DFEHEM L+ES  PGIREELESIGF KW
Sbjct: 163 NIVDFEHEMRLLESSAPGIREELESIGFAKW 193

The following BLAST results are available for this feature:
BLAST of MELO3C033968 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046937.11.3e-0638.53ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062727.17.2e-0530.94protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa][more]
KAA0047452.11.2e-0450.85protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYJ98646.1 prot... [more]
XP_008465839.11.2e-0450.85PREDICTED: uncharacterized protein LOC103503433 [Cucumis melo][more]
XP_008449188.13.6e-0464.10PREDICTED: uncharacterized protein LOC103491139 [Cucumis melo][more]
BLAST of MELO3C033968 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033968 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TYE66.3e-0738.53Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7V6U13.5e-0530.94Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TVG05.9e-0550.85Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3CPS65.9e-0550.85uncharacterized protein LOC103503433 OS=Cucumis melo OX=3656 GN=LOC103503433 PE=... [more]
A0A1S3BFU61.7e-0477.42protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo OX=3656 GN=LOC103489535 PE=... [more]
BLAST of MELO3C033968 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033968.1MELO3C033968.1mRNA