Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAATCACGGACAAACAAGGTTGCTAGACAGAAGCAACCTTACAATTATAGTAGCGGGTCGAAGTCGTTTCTACAACGACAGCACAAGCTCAACAAAGAGGAAAGTTGGTCGATCGTGTGGAGTTGTTCCGATAAATACACGTTTGAGATGGGACGTTCGTGTTATAGACCGTGGAGAATGCGCATGTAAGTTATCCAAGCAACACTCCTGCCCTTATTTGTCTTCTTTAGTAATGTATTTTTTACTTATTAAGTTTCTAAATTTTTTGCAGAATCAAATACTGGAACTCCATTCTCAGCTTGCCCCAGATGGTACTCAGCCACTCTTTGGGAACGAGATATGCGGGATGGTGTTCGGTAGACGATCGTGCTACTTAAAAGGCCTTGGTTGGGGACTCAAGCCCAAGGCTCGTAAGACAGCCAGTGCGAGCAGTTCCACGACCTCATGTTCACAGTCCACAGTAGAGCTCCAATTACGTGCTGCACTTTATCAAGCTATGAAATGCATTGAAAAATGTCTAAAAAATCATGATGTATTAGCTTCAGAAGTGGAACGAATGCGGAAGCTCATAGAAGACACGAGTCCGGCACAACAAGGACCACCACATGATCCCTAGCTTTGCGATACGTATATATGTTTCCATTATTCTTAAGTTCTTGAAATGACAATATTCAGTGATGATATGCATATATATGTACTAAACTTAGCCACTTTTGTATCATTGTAAGACTCGCGGTGTAGAATGGCATACGAGGCTCGTTAGGAGACGTACGACTTTCTTTGAACCTTTTTTTAACGAGGAA
mRNA sequence
AGCAATCACGGACAAACAAGGTTGCTAGACAGAAGCAACCTTACAATTATAGTAGCGGGTCGAAGTCGTTTCTACAACGACAGCACAAGCTCAACAAAGAGGAAAGTTGGTCGATCGTGTGGAGTTGTTCCGATAAATACACGTTTGAGATGGGACGTTCGTGTTATAGACCGTGGAGAATGCGCATGTAAGTTATCCAAGCAACACTCCTGCCCTTATTTGTCTTCTTTAAATCAAATACTGGAACTCCATTCTCAGCTTGCCCCAGATGGTACTCAGCCACTCTTTGGGAACGAGATATGCGGGATGGTGTTCGGTAGACGATCGTGCTACTTAAAAGGCCTTGGTTGGGGACTCAAGCCCAAGGCTCGTAAGACAGCCAGTGCGAGCAGTTCCACGACCTCATGTTCACAGTCCACAGTAGAGCTCCAATTACGTGCTGCACTTTATCAAGCTATGAAATGCATTGAAAAATGTCTAAAAAATCATGATGTATTAGCTTCAGAAGTGGAACGAATGCGGAAGCTCATAGAAGACACGAGTCCGGCACAACAAGGACCACCACATGATCCCTAGCTTTGCGATACGTATATATGTTTCCATTATTCTTAAGTTCTTGAAATGACAATATTCAGTGATGATATGCATATATATGTACTAAACTTAGCCACTTTTGTATCATTGTAAGACTCGCGGTGTAGAATGGCATACGAGGCTCGTTAGGAGACGTACGACTTTCTTTGAACCTTTTTTTAACGAGGAA
Coding sequence (CDS)
AGCAATCACGGACAAACAAGGTTGCTAGACAGAAGCAACCTTACAATTATAGTAGCGGGTCGAAGTCGTTTCTACAACGACAGCACAAGCTCAACAAAGAGGAAAGTTGGTCGATCGTGTGGAGTTGTTCCGATAAATACACGTTTGAGATGGGACGTTCGTGTTATAGACCGTGGAGAATGCGCATGTAAGTTATCCAAGCAACACTCCTGCCCTTATTTGTCTTCTTTAAATCAAATACTGGAACTCCATTCTCAGCTTGCCCCAGATGGTACTCAGCCACTCTTTGGGAACGAGATATGCGGGATGGTGTTCGGTAGACGATCGTGCTACTTAAAAGGCCTTGGTTGGGGACTCAAGCCCAAGGCTCGTAAGACAGCCAGTGCGAGCAGTTCCACGACCTCATGTTCACAGTCCACAGTAGAGCTCCAATTACGTGCTGCACTTTATCAAGCTATGAAATGCATTGAAAAATGTCTAAAAAATCATGATGTATTAGCTTCAGAAGTGGAACGAATGCGGAAGCTCATAGAAGACACGAGTCCGGCACAACAAGGACCACCACATGATCCCTAG
Protein sequence
SNHGQTRLLDRSNLTIIVAGRSRFYNDSTSSTKRKVGRSCGVVPINTRLRWDVRVIDRGECACKLSKQHSCPYLSSLNQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLGWGLKPKARKTASASSSTTSCSQSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP
Homology
BLAST of MELO3C033944 vs. NCBI nr
Match:
KAA0066064.1 (gamma-aminobutyrate transaminase POP2 [Cucumis melo var. makuwa])
HSP 1 Score: 229.2 bits (583), Expect = 3.0e-56
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0
Query: 78 NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLGWGLKPKARKTASASSSTTSCS 137
NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGL WGLKPKARKTASASSSTTSCS
Sbjct: 165 NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLDWGLKPKARKTASASSSTTSCS 224
Query: 138 QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP 192
QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP
Sbjct: 225 QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP 278
BLAST of MELO3C033944 vs. NCBI nr
Match:
TYJ99833.1 (gamma-aminobutyrate transaminase POP2 [Cucumis melo var. makuwa])
HSP 1 Score: 229.2 bits (583), Expect = 3.0e-56
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0
Query: 78 NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLGWGLKPKARKTASASSSTTSCS 137
NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGL WGLKPKARKTASASSSTTSCS
Sbjct: 150 NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLDWGLKPKARKTASASSSTTSCS 209
Query: 138 QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP 192
QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP
Sbjct: 210 QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP 263
BLAST of MELO3C033944 vs. NCBI nr
Match:
KAA0039175.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 178.3 bits (451), Expect = 6.2e-41
Identity = 105/196 (53.57%), Postives = 130/196 (66.33%), Query Frame = 0
Query: 1 SNHGQTRLLDRSNLTIIVAGRSRFYNDSTSSTKRK----VGRSCGVVPINTRLRWDVRVI 60
SNH +TRLLDRS+LTI+VAG S FYNDSTSS + K +G SC NTR WDVRV
Sbjct: 166 SNHRRTRLLDRSSLTIVVAGSSYFYNDSTSSLREKGSRPIGWSCSE---NTRSSWDVRVA 225
Query: 61 DRGECACKLSKQHSCPYLSSLNQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLG 120
R C NQ+L+L SQ +G+QPL +EIC V GRR Y KGLG
Sbjct: 226 GRRGC----------------NQMLKLQSQPTLEGSQPLSEDEICDQVLGRRPGYSKGLG 285
Query: 121 WGLKPKARKTASASSSTTSCSQST-VELQLRAALYQAMKCIEKCLKNHDVLASEVERMRK 180
WG KPK +T SASSS+TSCSQST E++L+A L++A++ IE +NH LAS+VE M+K
Sbjct: 286 WGPKPKTCRTMSASSSSTSCSQSTEKEIELQAKLHEALEWIEVQDRNHQALASQVETMKK 342
Query: 181 LIEDTSPAQQGPPHDP 192
+IE+ + AQQGP HDP
Sbjct: 346 MIEELTRAQQGPLHDP 342
BLAST of MELO3C033944 vs. NCBI nr
Match:
KAA0038961.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 175.6 bits (444), Expect = 4.0e-40
Identity = 100/192 (52.08%), Postives = 129/192 (67.19%), Query Frame = 0
Query: 1 SNHGQTRLLDRSNLTIIVAGRSRFYNDSTSSTKRKVGRSCGVVPINTRLRWDVRVIDRGE 60
SNHGQTRLLDRS+LTII+AG SRFYNDS SS + K +S + W +
Sbjct: 247 SNHGQTRLLDRSSLTIIIAGPSRFYNDSMSSLREKESQS---------IVWSC----SEK 306
Query: 61 CACKLSKQHSCPYLSSLNQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLGWGLK 120
+L + P+ + NQ+L+L SQ G+QPL +EIC V GRR CY KGLGWG K
Sbjct: 307 HTFELGRSCRRPFEDAHNQMLKLQSQPTLKGSQPLSEDEICDQVLGRRPCYSKGLGWGPK 366
Query: 121 PKARKTASASSSTTSCSQST-VELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIED 180
P+AR+T SASSS+TSCSQST E++L+A L + + I+ +NH VLAS+VE M+K+IE+
Sbjct: 367 PRARRTTSASSSSTSCSQSTKKEIELQAKLNETFERIDVQDRNHQVLASQVETMKKMIEE 425
Query: 181 TSPAQQGPPHDP 192
+ AQQGPPHDP
Sbjct: 427 FTRAQQGPPHDP 425
BLAST of MELO3C033944 vs. NCBI nr
Match:
TYK18447.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 171.8 bits (434), Expect = 5.8e-39
Identity = 103/196 (52.55%), Postives = 126/196 (64.29%), Query Frame = 0
Query: 1 SNHGQTRLLDRSNLTIIVAGRSRFYNDSTSSTKRK----VGRSCGVVPINTRLRWDVRVI 60
SNH +TRLLDRS+LTI+VAG S FYNDSTSS + K +G SC NTR WDVRV
Sbjct: 166 SNHRRTRLLDRSSLTIVVAGSSYFYNDSTSSLREKGSRPIGWSCSE---NTRSSWDVRVA 225
Query: 61 DRGECACKLSKQHSCPYLSSLNQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLG 120
R C NQ+L+L SQ +G+QPL +EIC V GRR Y KGLG
Sbjct: 226 GRRGC----------------NQMLKLQSQPTLEGSQPLSEDEICDQVLGRRPGYSKGLG 285
Query: 121 WGLKPKARKTASASSSTTSCSQST-VELQLRAALYQAMKCIEKCLKNHDVLASEVERMRK 180
WG KPK +T SASSS+TSCSQST E++L+A L++A +NH LAS+VE M+K
Sbjct: 286 WGPKPKTCRTMSASSSSTSCSQSTEKEIELQAKLHEA--------RNHQALASQVETMKK 334
Query: 181 LIEDTSPAQQGPPHDP 192
+IE+ + AQQGP HDP
Sbjct: 346 MIEELTRAQQGPLHDP 334
BLAST of MELO3C033944 vs. ExPASy TrEMBL
Match:
A0A5A7VFI2 (Gamma-aminobutyrate transaminase POP2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00450 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.5e-56
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0
Query: 78 NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLGWGLKPKARKTASASSSTTSCS 137
NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGL WGLKPKARKTASASSSTTSCS
Sbjct: 165 NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLDWGLKPKARKTASASSSTTSCS 224
Query: 138 QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP 192
QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP
Sbjct: 225 QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP 278
BLAST of MELO3C033944 vs. ExPASy TrEMBL
Match:
A0A5D3BKL5 (Gamma-aminobutyrate transaminase POP2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00390 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.5e-56
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0
Query: 78 NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLGWGLKPKARKTASASSSTTSCS 137
NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGL WGLKPKARKTASASSSTTSCS
Sbjct: 150 NQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLDWGLKPKARKTASASSSTTSCS 209
Query: 138 QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP 192
QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP
Sbjct: 210 QSTVELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIEDTSPAQQGPPHDP 263
BLAST of MELO3C033944 vs. ExPASy TrEMBL
Match:
A0A5A7TCP3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00810 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 3.0e-41
Identity = 105/196 (53.57%), Postives = 130/196 (66.33%), Query Frame = 0
Query: 1 SNHGQTRLLDRSNLTIIVAGRSRFYNDSTSSTKRK----VGRSCGVVPINTRLRWDVRVI 60
SNH +TRLLDRS+LTI+VAG S FYNDSTSS + K +G SC NTR WDVRV
Sbjct: 166 SNHRRTRLLDRSSLTIVVAGSSYFYNDSTSSLREKGSRPIGWSCSE---NTRSSWDVRVA 225
Query: 61 DRGECACKLSKQHSCPYLSSLNQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLG 120
R C NQ+L+L SQ +G+QPL +EIC V GRR Y KGLG
Sbjct: 226 GRRGC----------------NQMLKLQSQPTLEGSQPLSEDEICDQVLGRRPGYSKGLG 285
Query: 121 WGLKPKARKTASASSSTTSCSQST-VELQLRAALYQAMKCIEKCLKNHDVLASEVERMRK 180
WG KPK +T SASSS+TSCSQST E++L+A L++A++ IE +NH LAS+VE M+K
Sbjct: 286 WGPKPKTCRTMSASSSSTSCSQSTEKEIELQAKLHEALEWIEVQDRNHQALASQVETMKK 342
Query: 181 LIEDTSPAQQGPPHDP 192
+IE+ + AQQGP HDP
Sbjct: 346 MIEELTRAQQGPLHDP 342
BLAST of MELO3C033944 vs. ExPASy TrEMBL
Match:
A0A5A7TBG7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00370 PE=4 SV=1)
HSP 1 Score: 175.6 bits (444), Expect = 1.9e-40
Identity = 100/192 (52.08%), Postives = 129/192 (67.19%), Query Frame = 0
Query: 1 SNHGQTRLLDRSNLTIIVAGRSRFYNDSTSSTKRKVGRSCGVVPINTRLRWDVRVIDRGE 60
SNHGQTRLLDRS+LTII+AG SRFYNDS SS + K +S + W +
Sbjct: 247 SNHGQTRLLDRSSLTIIIAGPSRFYNDSMSSLREKESQS---------IVWSC----SEK 306
Query: 61 CACKLSKQHSCPYLSSLNQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLGWGLK 120
+L + P+ + NQ+L+L SQ G+QPL +EIC V GRR CY KGLGWG K
Sbjct: 307 HTFELGRSCRRPFEDAHNQMLKLQSQPTLKGSQPLSEDEICDQVLGRRPCYSKGLGWGPK 366
Query: 121 PKARKTASASSSTTSCSQST-VELQLRAALYQAMKCIEKCLKNHDVLASEVERMRKLIED 180
P+AR+T SASSS+TSCSQST E++L+A L + + I+ +NH VLAS+VE M+K+IE+
Sbjct: 367 PRARRTTSASSSSTSCSQSTKKEIELQAKLNETFERIDVQDRNHQVLASQVETMKKMIEE 425
Query: 181 TSPAQQGPPHDP 192
+ AQQGPPHDP
Sbjct: 427 FTRAQQGPPHDP 425
BLAST of MELO3C033944 vs. ExPASy TrEMBL
Match:
A0A5D3D4H5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00060 PE=4 SV=1)
HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 103/196 (52.55%), Postives = 126/196 (64.29%), Query Frame = 0
Query: 1 SNHGQTRLLDRSNLTIIVAGRSRFYNDSTSSTKRK----VGRSCGVVPINTRLRWDVRVI 60
SNH +TRLLDRS+LTI+VAG S FYNDSTSS + K +G SC NTR WDVRV
Sbjct: 166 SNHRRTRLLDRSSLTIVVAGSSYFYNDSTSSLREKGSRPIGWSCSE---NTRSSWDVRVA 225
Query: 61 DRGECACKLSKQHSCPYLSSLNQILELHSQLAPDGTQPLFGNEICGMVFGRRSCYLKGLG 120
R C NQ+L+L SQ +G+QPL +EIC V GRR Y KGLG
Sbjct: 226 GRRGC----------------NQMLKLQSQPTLEGSQPLSEDEICDQVLGRRPGYSKGLG 285
Query: 121 WGLKPKARKTASASSSTTSCSQST-VELQLRAALYQAMKCIEKCLKNHDVLASEVERMRK 180
WG KPK +T SASSS+TSCSQST E++L+A L++A +NH LAS+VE M+K
Sbjct: 286 WGPKPKTCRTMSASSSSTSCSQSTEKEIELQAKLHEA--------RNHQALASQVETMKK 334
Query: 181 LIEDTSPAQQGPPHDP 192
+IE+ + AQQGP HDP
Sbjct: 346 MIEELTRAQQGPLHDP 334
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0066064.1 | 3.0e-56 | 99.12 | gamma-aminobutyrate transaminase POP2 [Cucumis melo var. makuwa] | [more] |
| TYJ99833.1 | 3.0e-56 | 99.12 | gamma-aminobutyrate transaminase POP2 [Cucumis melo var. makuwa] | [more] |
| KAA0039175.1 | 6.2e-41 | 53.57 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0038961.1 | 4.0e-40 | 52.08 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| TYK18447.1 | 5.8e-39 | 52.55 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VFI2 | 1.5e-56 | 99.12 | Gamma-aminobutyrate transaminase POP2 OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
| A0A5D3BKL5 | 1.5e-56 | 99.12 | Gamma-aminobutyrate transaminase POP2 OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
| A0A5A7TCP3 | 3.0e-41 | 53.57 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5A7TBG7 | 1.9e-40 | 52.08 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5D3D4H5 | 2.8e-39 | 52.55 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
