MELO3C033926 (gene) Melon (DHL92) v4

Overview
NameMELO3C033926
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionZf-CCHC domain-containing protein
Locationchr09: 14696766 .. 14697044 (+)
RNA-Seq ExpressionMELO3C033926
SyntenyMELO3C033926
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGTCGGAGAGGAGGAATCCCTGCCATGGGGGACAACCGTGAGCAAGAAGAGGTGGAGGAGATCGCCACCCTCTCTCCAAGGACATCCACAATACGCTTGCCGGCCGTCGGAGACTCCTTGGGAGATTTACATGAGAAATTTGATAGAATGATGGATAGTTTGGAGAACGCTTTCAAAGTAGAACTACCACCCGACCTACCTATACACCAAGTCTTCACTGTTGCTGATCTAAAACATCACCACGCACCAGACAACTTCAAATTGGCCAACTGA

mRNA sequence

ATGGCTAGTCGGAGAGGAGGAATCCCTGCCATGGGGGACAACCGTGAGCAAGAAGAGGTGGAGGAGATCGCCACCCTCTCTCCAAGGACATCCACAATACGCTTGCCGGCCGTCGGAGACTCCTTGGGAGATTTACATGAGAAATTTGATAGAATGATGGATAGTTTGGAGAACGCTTTCAAAGTAGAACTACCACCCGACCTACCTATACACCAAGTCTTCACTGTTGCTGATCTAAAACATCACCACGCACCAGACAACTTCAAATTGGCCAACTGA

Coding sequence (CDS)

ATGGCTAGTCGGAGAGGAGGAATCCCTGCCATGGGGGACAACCGTGAGCAAGAAGAGGTGGAGGAGATCGCCACCCTCTCTCCAAGGACATCCACAATACGCTTGCCGGCCGTCGGAGACTCCTTGGGAGATTTACATGAGAAATTTGATAGAATGATGGATAGTTTGGAGAACGCTTTCAAAGTAGAACTACCACCCGACCTACCTATACACCAAGTCTTCACTGTTGCTGATCTAAAACATCACCACGCACCAGACAACTTCAAATTGGCCAACTGA

Protein sequence

MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLENAFKVELPPDLPIHQVFTVADLKHHHAPDNFKLAN
Homology
BLAST of MELO3C033926 vs. NCBI nr
Match: KAA0056057.1 (putative fructokinase-6 [Cucumis melo var. makuwa] >TYK01513.1 putative fructokinase-6 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 5.1e-17
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1   MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLE 58
           MA  RGGIPA GDNREQEEVEEIATLSPRTS +RL AV DSLGDLHEKFDR+MDSLE
Sbjct: 56  MAGGRGGIPAAGDNREQEEVEEIATLSPRTSMVRLLAVEDSLGDLHEKFDRVMDSLE 112

BLAST of MELO3C033926 vs. NCBI nr
Match: KAA0057344.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1  MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLE 58
          MA RRGGIPA GDNREQEEVE IATLSPRTST+RL AV D LGDLHEKF+RMMD+LE
Sbjct: 1  MADRRGGIPAAGDNREQEEVEAIATLSPRTSTVRLLAVKDFLGDLHEKFNRMMDNLE 57

BLAST of MELO3C033926 vs. NCBI nr
Match: TYK11219.1 (DExH-box ATP-dependent RNA helicase DExH7 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 4.3e-16
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 1   MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLE 58
           M  RRGGIPA+GDNREQEEVEEI TLSPRTST+ L AV DSLGDLH KFDR+MDSLE
Sbjct: 232 MVDRRGGIPAVGDNREQEEVEEITTLSPRTSTVCLLAVEDSLGDLHVKFDRVMDSLE 288

BLAST of MELO3C033926 vs. NCBI nr
Match: TYK23382.1 (serine/threonine-protein kinase ATR [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 1   MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLE 58
           MA RRGGIPA  DNREQEEVEEIA LSPRTST+ L  V DSLG LHEKFDRMMDSLE
Sbjct: 568 MAGRRGGIPAARDNREQEEVEEIAALSPRTSTVHLLVVEDSLGGLHEKFDRMMDSLE 624

BLAST of MELO3C033926 vs. NCBI nr
Match: TYK11204.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 1  MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLE 58
          MA RR GIPA GDNREQEEVEE A LSPRTST+   AV DSLGDLHEKFDR+MD+LE
Sbjct: 1  MAGRREGIPATGDNREQEEVEENAALSPRTSTVCFLAVEDSLGDLHEKFDRVMDTLE 57

BLAST of MELO3C033926 vs. ExPASy TrEMBL
Match: A0A5A7UN76 (Putative fructokinase-6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00730 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.5e-17
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1   MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLE 58
           MA  RGGIPA GDNREQEEVEEIATLSPRTS +RL AV DSLGDLHEKFDR+MDSLE
Sbjct: 56  MAGGRGGIPAAGDNREQEEVEEIATLSPRTSMVRLLAVEDSLGDLHEKFDRVMDSLE 112

BLAST of MELO3C033926 vs. ExPASy TrEMBL
Match: A0A5A7UQ86 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001990 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.5e-17
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1  MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLE 58
          MA RRGGIPA GDNREQEEVE IATLSPRTST+RL AV D LGDLHEKF+RMMD+LE
Sbjct: 1  MADRRGGIPAAGDNREQEEVEAIATLSPRTSTVRLLAVKDFLGDLHEKFNRMMDNLE 57

BLAST of MELO3C033926 vs. ExPASy TrEMBL
Match: A0A5D3CLX2 (DExH-box ATP-dependent RNA helicase DExH7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00630 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 1   MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLE 58
           M  RRGGIPA+GDNREQEEVEEI TLSPRTST+ L AV DSLGDLH KFDR+MDSLE
Sbjct: 232 MVDRRGGIPAVGDNREQEEVEEITTLSPRTSTVCLLAVEDSLGDLHVKFDRVMDSLE 288

BLAST of MELO3C033926 vs. ExPASy TrEMBL
Match: A0A5D3DIJ1 (Serine/threonine-protein kinase ATR OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004480 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 1   MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLE 58
           MA RRGGIPA  DNREQEEVEEIA LSPRTST+ L  V DSLG LHEKFDRMMDSLE
Sbjct: 568 MAGRRGGIPAARDNREQEEVEEIAALSPRTSTVHLLVVEDSLGGLHEKFDRMMDSLE 624

BLAST of MELO3C033926 vs. ExPASy TrEMBL
Match: A0A5D3CJ99 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00470 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.8e-15
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 1  MASRRGGIPAMGDNREQEEVEEIATLSPRTSTIRLPAVGDSLGDLHEKFDRMMDSLE 58
          MA RR GIPA GDNREQEEVEE A LSPRTST+   AV DSLGDLHEKFDR+MD+LE
Sbjct: 1  MAGRREGIPATGDNREQEEVEENAALSPRTSTVCFLAVEDSLGDLHEKFDRVMDTLE 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056057.15.1e-1785.96putative fructokinase-6 [Cucumis melo var. makuwa] >TYK01513.1 putative fructoki... [more]
KAA0057344.11.1e-1684.21RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa][more]
TYK11219.14.3e-1682.46DExH-box ATP-dependent RNA helicase DExH7 [Cucumis melo var. makuwa][more]
TYK23382.11.3e-1582.46serine/threonine-protein kinase ATR [Cucumis melo var. makuwa][more]
TYK11204.11.8e-1478.95reverse transcriptase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UN762.5e-1785.96Putative fructokinase-6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UQ865.5e-1784.21RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CLX22.1e-1682.46DExH-box ATP-dependent RNA helicase DExH7 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A5D3DIJ16.1e-1682.46Serine/threonine-protein kinase ATR OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3CJ998.8e-1578.95Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033926.1MELO3C033926.1mRNA