MELO3C033909 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033909
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1
Location	chr09: 13840813 .. 13843573 (+)
RNA-Seq Expression	MELO3C033909
Synteny	MELO3C033909

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATATCATTGTTGCTCAACTTCTATACCTTGATGCTATTGATCCCAATAAGGTTCTCTTTCTTTGCTCTCAATTCATTTTAAGGAAGTCTTTTGGGGTAGGGAAGAGGGAGCATAGTGAGATTTGGTCTTTGGTTAGGTTTCTCGTGTCCCTTTAGGGTGTTTTGGTGGCATGTTTTCTTTTTGTATGTCTTTTTATTCTTTCACTTTTTCCCAATGAAAGTCGTTGATATCATAAAAAAATCACAAAGAAAATGGTCGTGCAGGCTAGGTAACAATTGTTTTTGTCGAGCTTGATTGAATGTAGATAACTGTATATCCTTCACATAAGCATAATTTGTCGAGGTTGATTGAAAGTACACATACAATTTCTAGCTTCTTCAGACAATACAAAGATATGGTGTACATATCATTCAAGAAAGAAATTCTGTGTATTATATTCATGTGCTTATTCAAGATATTTCTAAAGGTTTATTTATGACTAATAATTATTCTCATATACCAAGTGACCTGAAATTAGACATTCGTTTTCTTTGCTTGGGTTGTCATTTCAGATTTTCTGTAGTTTTAAAAAGATAGTTATTAATTAAGTGTTGAATAAAATGCATTAATCTGTAAGAACTTCATATGTTAGACTTCTGTTACAATATAAATGAAGATTCATACTTGATGAGCAAATACAGGACATGCTTTGATGATATCTGCTGGAACTCTACTGAAGAAAATAGCTTATGAACATAATATAGCAGATGCACGGTCTTCTCCAAATTTTAGTATATTAGGTGTTGTTATGATATGTGGTGCCTTTAGGCAACTTGTAGGAAGCCATTTTTACTACGAATCGTGATACTACACAGGTAATCTTCAACTCTCTTCAGTTTTACCCATTCTTAAATTCAACAATGAAAAATGTACTTCAGATAACTATTATATTCTTTCAATTCTCCTCTTTATTGCTAGCCTAATTTACCTTCACCTATCACCTCATCCTCATTCCTGCAAAATTTTTAAAGTTCCTCATTTTTGCTCCTTAACGTTCTTCAGTTTTATTTGAAATATAAATAAAGATTATCTTATTCAAAAACATTTCTAACTTGTAATTACATTTTTGTATATTTGAATGTATCCAATAATAGATGCTTGAAATTCAATCAATGGTTAAAAGCATAGTTTTTATCTCAGGTTGAGACAGTGACACAATTTAGTGTTGTATTTCTTATTTTTGCTCTAGGATTGGAGTTTTCTTTGACAAAGGTACACTTTTTAATTGGCAGTTTTATTTCTTTAGTTAATGAATGAGTTAAAATTTTCCTTATGAGTTAAATACCTAGATTTATAGATAATTTTCTCTGCAATTAAAAGTTGTGGGAGCTTTGACTGTTTTTTGAGGTTTTCTACAGATCATCATATTTATGTTCTTGATTTTTACTGTTGTTGTAGGTCATTCTTCTAGTAGTTTCTCCATATAAATTTTTAGTTTTGGCTTCTGCATAGAAAATCTTGTATTGATGATAGTTATTAATCCTATTGATTTAAAACTAGATATGTGCCTATGATTTTATATGTGTTTTTTAAAAGGATATGGTATTGTTCGTGTTGAATTTATCACTAAAAAACGTTTGCTGTAAGAGACAAAGTAAGAAATTGTTATTACATCAAGTTTTGGAAATATCTCCTATCTTCATTTATATTTGTTGTTTAATTTCAAGTTTAGAAAAAAGTAGCAACGTGATCTACTTTTATGAGTTTTGATTTTTTTTAGAATCAAGAGTTTTGATTTAGTACTTATAGTTTGGTTAAATTTTCAATGTCAACTCTATGGTTTGAATTTAATTTTAAGTCTCTATGATCTAAAATTTCATTTTTTGTATTCCATAATTTAGTATGTGGTTTTTTTTTCTTTACTGTTATTGAGGTGGTTATTGAAGGCATAAAAATTTGAGGAAAAATTGAGATTCTCTATAGGATAGAAATAATGTTGTAAACCAGAAGTTACGGGGTTGAAAAGGATATGTCTGATTTTTATGGATTGTGTTCTTTAATTATTGGGTAAGTCAAGATTTTGAGGTTTAGTTTGGTCCCTGGAACTATTTTCTTTTCTGACTTCACTATGTGAATGACTTTTTAAAATGAAAATATGATTGCTGTTGTAAGTTCTTATTACCTTCTCTATCATTAAATTGCCCTCTCTATGTATAAATGCATGTATTATTAAAAGTATTATGCTGCTATCTTTATATGCAATGGTACTTTTGAGCAAAGAAACTTTGACGCTTGGATCTGGTTATATCCTAATGATAGTAGTAGTTGGTAATATATTTTTCCAGGTCATTTTCTACCTGAGGAGAATGATAAGTTTCTAGATAAGGTTTGAGCTACAGTTCAGGAAGAGGAATGTCAAGTCCTTGCTGCAGCTGATACAGATGCTGCCAAGGATGTCATTGCTACTGCTGAGGTCTCTAGGAAGACTATTCCAACTTACCCAGAATCAAGGAATCCAATATTTAAGTCTATATCAACTATGGTTAGTGGAATGGCGAATCATACCTTCATTTGGTGCCTTTTCATTATGGCTCTTTGGCGTAAATTTTTCTAACTTTTAACTTGACAAGGCGGATGTGTGTTTTTAGGAGAATCATTGCCGATCTGTATAAAATGAGTATGTGCTAAATAATGTAGGAAGGAAGTTGCATTACGTCAGAGAGAGGTATTTACAACATCAAATACGTAACATTTATGATCGTGAACATAAAGAAG

mRNA sequence

ATGGCAAATATCATTGTTGCTCAACTTCTATACCTTGATGCTATTGATCCCAATAAGGTTCTCTTTCTTTGCTCTCAATTCATTTTAAGGAAGTCTTTTGGGGTAGGGAAGAGGGAGCATAGACATGCTTTGATGATATCTGCTGGAACTCTACTGAAGAAAATAGCTTATGAACATAATATAGCAGATGCACGGTCTTCTCCAAATTTTAGTATATTAGGTGTTGTTATGATATGTGGTGCCTTTAGGCAACTTGATATGGTATTGTTCGTGTTGAATTTATCACTAAAAAACGTTTGCTGTAAGAGACAAAGTCATTTTCTACCTGAGGAGAATGATAAGTTTCTAGATAAGGAGGAATGTCAAGTCCTTGCTGCAGCTGATACAGATGCTGCCAAGGATGTCATTGCTACTGCTGAGGTCTCTAGGAAGACTATTCCAACTTACCCAGAATCAAGGAATCCAATATTTAAGTCTATATCAACTATGGAAGGAAGTTGCATTACGTCAGAGAGAGGTATTTACAACATCAAATACGTAACATTTATGATCGTGAACATAAAGAAG

Coding sequence (CDS)

ATGGCAAATATCATTGTTGCTCAACTTCTATACCTTGATGCTATTGATCCCAATAAGGTTCTCTTTCTTTGCTCTCAATTCATTTTAAGGAAGTCTTTTGGGGTAGGGAAGAGGGAGCATAGACATGCTTTGATGATATCTGCTGGAACTCTACTGAAGAAAATAGCTTATGAACATAATATAGCAGATGCACGGTCTTCTCCAAATTTTAGTATATTAGGTGTTGTTATGATATGTGGTGCCTTTAGGCAACTTGATATGGTATTGTTCGTGTTGAATTTATCACTAAAAAACGTTTGCTGTAAGAGACAAAGTCATTTTCTACCTGAGGAGAATGATAAGTTTCTAGATAAGGAGGAATGTCAAGTCCTTGCTGCAGCTGATACAGATGCTGCCAAGGATGTCATTGCTACTGCTGAGGTCTCTAGGAAGACTATTCCAACTTACCCAGAATCAAGGAATCCAATATTTAAGTCTATATCAACTATGGAAGGAAGTTGCATTACGTCAGAGAGAGGTATTTACAACATCAAATACGTAACATTTATGATCGTGAACATAAAGAAG

Protein sequence

MANIIVAQLLYLDAIDPNKVLFLCSQFILRKSFGVGKREHRHALMISAGTLLKKIAYEHNIADARSSPNFSILGVVMICGAFRQLDMVLFVLNLSLKNVCCKRQSHFLPEENDKFLDKEECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTMEGSCITSERGIYNIKYVTFMIVNIKK

Homology

[Close]

BLAST of MELO3C033909 vs. NCBI nr
Match: KAA0037113.1 (hypothetical protein E6C27_scaffold379G00140 [Cucumis melo var. makuwa] >TYK13963.1 hypothetical protein E5676_scaffold832G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-24
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 116 LDKEECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTMEGSCITSERGIY 175
           + +EE Q LAAAD DA KD IAT EVSRKTIPTYPESRNPIFKS+STMEGSCITSERG Y
Sbjct: 23  VQEEERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTMEGSCITSERGSY 82

Query: 176 NIKYVTFMIVNIKK 190
           NIKYVTFMIVNI+K
Sbjct: 83  NIKYVTFMIVNIRK 96

[Close]

BLAST of MELO3C033909 vs. NCBI nr
Match: KAA0062676.1 (hypothetical protein E6C27_scaffold1576G00020 [Cucumis melo var. makuwa] >TYK08458.1 hypothetical protein E5676_scaffold632G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-15
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 116 LDKEECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTMEGSC 168
           + +EECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTME  C
Sbjct: 23  VQEEECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTMENHC 74

[Close]

BLAST of MELO3C033909 vs. NCBI nr
Match: XP_016899131.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-13
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 84  QLDMVLFVLNL----SLKNVCCKRQSHFLPEENDKFLDK-------EECQVLAAADTDAA 143
           +L++ L V  L    S++    K+Q HFLPEE+DKFL+K       EE Q LAAADTDAA
Sbjct: 214 ELELALIVEKLQELRSIRIQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAA 273

Query: 144 KDVIATAEVSRKTIPTYPESRNP 156
           KD IATAEVSRKT+PTYPESR+P
Sbjct: 274 KDAIATAEVSRKTVPTYPESRDP 296

[Close]

BLAST of MELO3C033909 vs. NCBI nr
Match: KAA0048935.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-13
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 84  QLDMVLFVLNL----SLKNVCCKRQSHFLPEENDKFLDK-------EECQVLAAADTDAA 143
           +L++ L V  L    S++    K+Q HFLPEE+DKFL+K       EE Q LAAADTDAA
Sbjct: 243 ELELALIVEKLQELRSIRIQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAA 302

Query: 144 KDVIATAEVSRKTIPTYPESRNP 156
           KD IATAEVSRKT+PTYPESR+P
Sbjct: 303 KDAIATAEVSRKTVPTYPESRDP 325

[Close]

BLAST of MELO3C033909 vs. NCBI nr
Match: XP_031737698.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-13
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 84  QLDMVLFVLNL----SLKNVCCKRQSHFLPEENDKFLDK-------EECQVLAAADTDAA 143
           +L++ L V  L    S++    K+Q HFLPEE+DKFL+K       EE Q LAAADTDAA
Sbjct: 216 ELELALIVEKLQELRSIRIQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAA 275

Query: 144 KDVIATAEVSRKTIPTYPESRNP 156
           KD IATAEVSRKT+PTYPESR+P
Sbjct: 276 KDAIATAEVSRKTVPTYPESRDP 298

[Close]

BLAST of MELO3C033909 vs. ExPASy TrEMBL
Match: A0A5D3CQ23 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001670 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-24
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 116 LDKEECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTMEGSCITSERGIY 175
           + +EE Q LAAAD DA KD IAT EVSRKTIPTYPESRNPIFKS+STMEGSCITSERG Y
Sbjct: 23  VQEEERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTMEGSCITSERGSY 82

Query: 176 NIKYVTFMIVNIKK 190
           NIKYVTFMIVNI+K
Sbjct: 83  NIKYVTFMIVNIRK 96

[Close]

BLAST of MELO3C033909 vs. ExPASy TrEMBL
Match: A0A5D3CB94 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold632G00020 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 116 LDKEECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTMEGSC 168
           + +EECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTME  C
Sbjct: 23  VQEEECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTMENHC 74

[Close]

BLAST of MELO3C033909 vs. ExPASy TrEMBL
Match: A0A5D3D0C0 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005040 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 84  QLDMVLFVLNL----SLKNVCCKRQSHFLPEENDKFLDK-------EECQVLAAADTDAA 143
           +L++ L V  L    S++    K+Q HFLPEE+DKFL+K       EE Q LAAADTDAA
Sbjct: 214 ELELALIVEKLQELRSIRIQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAA 273

Query: 144 KDVIATAEVSRKTIPTYPESRNP 156
           KD IATAEVSRKT+PTYPESR+P
Sbjct: 274 KDAIATAEVSRKTVPTYPESRDP 296

[Close]

BLAST of MELO3C033909 vs. ExPASy TrEMBL
Match: A0A5A7U5M4 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001550 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 84  QLDMVLFVLNL----SLKNVCCKRQSHFLPEENDKFLDK-------EECQVLAAADTDAA 143
           +L++ L V  L    S++    K+Q HFLPEE+DKFL+K       EE Q LAAADTDAA
Sbjct: 243 ELELALIVEKLQELRSIRIQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAA 302

Query: 144 KDVIATAEVSRKTIPTYPESRNP 156
           KD IATAEVSRKT+PTYPESR+P
Sbjct: 303 KDAIATAEVSRKTVPTYPESRDP 325

[Close]

BLAST of MELO3C033909 vs. ExPASy TrEMBL
Match: A0A0A0L417 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121010 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 84  QLDMVLFVLNL----SLKNVCCKRQSHFLPEENDKFLDK-------EECQVLAAADTDAA 143
           +L++ L V  L    S++    K+Q HFLPEE+DKFL+K       EE Q LAAADTDAA
Sbjct: 216 ELELALIVEKLQELRSIRIQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAA 275

Query: 144 KDVIATAEVSRKTIPTYPESRNP 156
           KD IATAEVSRKT+PTYPESR+P
Sbjct: 276 KDAIATAEVSRKTVPTYPESRDP 298

[Close]

BLAST of MELO3C033909 vs. TAIR 10
Match: AT2G46200.1 (unknown protein; Has 2968 Blast hits to 2381 proteins in 310 species: Archae - 16; Bacteria - 188; Metazoa - 1070; Fungi - 227; Plants - 145; Viruses - 4; Other Eukaryotes - 1318 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 8.3e-04
Identity = 31/95 (32.63%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 84  QLDMVLFVLNL----SLKNVCCKRQSHFLPEENDKF-------LDKEECQVLAAADTDAA 143
           +L++ L V  +    SL+    K+Q HFLPEE+DKF       +++EE Q  +  +T+  
Sbjct: 209 ELELALIVEEMQELRSLRIEKLKKQGHFLPEEDDKFFESVRAAVEQEENQAQSLINTETE 268

Query: 144 KDVIATAEVSRKTIPTYPESRNPIFKSISTMEGSC 168
           + VIA+ E    T+ T  ++ N   K  +T   SC
Sbjct: 269 EHVIASEE--NTTLTTSNKTNNDTDKDSNTNAASC 301

[Close]

BLAST of MELO3C033909 vs. TAIR 10
Match: AT2G46200.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 8.3e-04
Identity = 31/95 (32.63%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 84  QLDMVLFVLNL----SLKNVCCKRQSHFLPEENDKF-------LDKEECQVLAAADTDAA 143
           +L++ L V  +    SL+    K+Q HFLPEE+DKF       +++EE Q  +  +T+  
Sbjct: 209 ELELALIVEEMQELRSLRIEKLKKQGHFLPEEDDKFFESVRAAVEQEENQAQSLINTETE 268

Query: 144 KDVIATAEVSRKTIPTYPESRNPIFKSISTMEGSC 168
           + VIA+ E    T+ T  ++ N   K  +T   SC
Sbjct: 269 EHVIASEE--NTTLTTSNKTNNDTDKDSNTNAASC 301

The following BLAST results are available for this feature:

BLAST of MELO3C033909 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037113.1	4.0e-24	83.78	hypothetical protein E6C27_scaffold379G00140 [Cucumis melo var. makuwa] >TYK1396...	[more]
KAA0062676.1	1.2e-15	90.38	hypothetical protein E6C27_scaffold1576G00020 [Cucumis melo var. makuwa] >TYK084...	[more]
XP_016899131.1	2.4e-13	60.24	PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cu...	[more]
KAA0048935.1	2.4e-13	60.24	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucumis melo ...	[more]
XP_031737698.1	2.4e-13	60.24	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucumis sativ...	[more]

BLAST of MELO3C033909 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033909 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQ23	1.9e-24	83.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CB94	5.6e-16	90.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D0C0	1.2e-13	60.24	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis mel...	[more]
A0A5A7U5M4	1.2e-13	60.24	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis mel...	[more]
A0A0A0L417	1.2e-13	60.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121010 PE=4 SV=1	[more]

BLAST of MELO3C033909 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46200.1	8.3e-04	32.63	unknown protein; Has 2968 Blast hits to 2381 proteins in 310 species: Archae - 1...	[more]
AT2G46200.2	8.3e-04	32.63	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033909.1	MELO3C033909.1	mRNA