MELO3C033897 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033897
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Dynamin GTPase
Location	chr09: 12991244 .. 12994585 (+)
RNA-Seq Expression	MELO3C033897
Synteny	MELO3C033897

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTCTTGAGTTAACCACTGGCATATGTTTCGAGCTTGGATTTAGTTGTATGGTGCGACAAGGTGGTAAGGCGATACGTGTAAAGTTGTAATTCAGAACTGGCGGGTAAAGAAAATAATTATCCAAAGGATTAATATAAATAGGGGTGGAGGTCGTAAGAGAAGTGTTGTTATTTGGAGGTTTTGTCGAAAGATTGCAAAGAGTTGAGTTGCTGCTAAGGGAGTACTAGGCAAGTGGCTTTCAGGAAAGAAGAGGATCAGATATTTGTGTGAGTGATGTTTATAAAAGAAAGAAGTGTTTGAATATATTCTTTCTGAGTTTTATGATATACTTATGTTAACGCATTAATATGACACTATTGTTAATATTGATACTGTTTATTGAAAAGAAAGTTATGAACTAATGTTTCTTGACTTCTATGTGATGAAATGACGATTTCTGAAAAAAATGCATGAGACTTAATAAAGTTTGCTATGAGATGACCTTTGTACCCTACGCAACATAATGTCTCACACTTGCTGTGTGTTTTGGTGTGGGATGCCTTATCCTTGTTGTGTGTTACGAGATAAGTCGCTCTATTCTTGTTGTGTGATCTATAATATAATGACCCTATTCCTACTACGTGATCTTGAATAGGATGCCTTATCCTTGCTGTGTGATTTGAAATGGTTCTCTGTTCTTGTTGTGTGATATAGAATAGAATTTCCTATTTTTGTTGTGTGATCTTGAATAGGAATATTCTTCATTACTTGCTATGTGTTCTAATGTGGGATACCCTTTGCTTGTTGTGTGATCTGACATTGAAAGATGCGGTACGCTCAATTAAAATTGATGGAACTCGCTAAATGCATTGAGATTACTTTACGTAACTGTAGTATGGCAAAAGAGTATGGTAAACGCTTGAGTTGGAGAAAGGGTACAAAAATGTAACTAAATACGTAGAACGATTATGTGAGATGATCATACAATGGGATATGAATTATGTGAAATGATTTAAAAGAAGTATTTTGTGAGTGACCTTCTTAAGCTAAACACTCATGTGCGAGTGATTTTCTTAAGCTAAACACTCCTATGTGAATGATTTGTAAACTAAATGTTTTGTAAATGCATGTTTTCTTAATAGATTCTTTCTGAGTCTGAGTTACGCATAACACCTTTTGTATTCTCTATGTTATTGTTGTTGTTGTTGTTGTTTAAAAAGAGAAAACTATTGCTTTCTATCTGTTGATTCTGATGAATGTGTGCAAACCATTAGCCCCATTCCTATCAAGTGAGTAGTGATTATGTGATTAAGCTAAGTTGGTTGTTTAAGTGTTTTCCACTGCGTTGAGTTGTATTGATCTCTTGAGTTCAAAGTTGAAACTCTGTGCATATGAAGATTGGTTTGAGAAGTTTCGCTTACTAGGCGTTTAACTTGTTATCTCGGGAAGAGGTACTCGTTGGGTGTCAAGACGGCACACCTCCTTCTAGTTGCATAAAGTGGCTAATGGGGCGGGGCATGACACAAATTAACAATGAATTCTTTAATAAGATAACGATAAAAAAGCCTCAACAATAAAATTATTCTTTTTAATTTAGTATCCAACTAAAGTTGCATGAGCTCAATACATTCTTGAGGTCTGTCTGATAGTTCCTTTTCATCAACAATAAATTTTTTCCATCAACAATAAATTGATTCCACAAGCCAACAGATTCCTTTGTTTGGAAGGAAACGCTGCTGAAGGGGACAAAAGGAACCTCAGGACCAATTGATCGCTTCTCTTTACCTTTTGTTGAAGCACGAGTAACCCTAATCTTTTCAACATTTCCTACATCAGTAACATGATTAAAGTCCTAATTTCTGTCACTGCCTTCGTAATGAATTCTATTTGAGACATTTTTAGGAGTCTCAGGAGAAGTATTATAAACTAAGTCAACATTCTGTAACTTTGTTCGTAAATGAGCAATAGGAACATTATCATCATCCTCATAATCTAATGATTTGTTAGGATAGCCAGGAGGAGATAAAACTAGAGTCCTTTAATAGAGGAGTTTAACAGCTCAACATCATTCACATGCATCTAGTTTTTAACTTCAAAATCGTGGAAAGGAATGGTATCTTTAATATCATCTTGAGGAGCGATATCCTCTCTAACAACATTACCAACAGGGTTACCAGACTATAAGAAATTTTGGATCTCCCAATTCCGCTTTACATCATCAGAAGAAAATTAGGTGTTGGGAGATTGGGAATCTTTTAACACAACATGAGTTAAACCGTTGGAAGATATAGTATCACCCAATGCATCAAAACAGCGTCAACCATTAGTTAGCATCTTTCGACGTCGTGTTGTATAGGCGTCGGGGGTAGGGGAGAACTCTTAATGATGCTATTAATGCGTCGGGAGTTTTTGGGCAACTGTCGATGCAGCCGTTAATGCGTCGTTAGTTCCCTAACAACTCTCGATGCTTATCGGGATGCGTCAAGTTTGCCTTTAAAATCCCTCTTCTGATCTCTATATTTCATAGATCTACGAAGAAGGGGTCCAAAGAAAACTTACAAAGTTACCCACCACCGTCGCTCCTGCCATACCACACAACGTCATCCTCGCCGCCTGCTCCATCTCTTCTAGTGTTGTCGCCTTCATCTCTTTTAGTAAGTAATTTGAATTCTGTCCTAAATTTTTTTCTAAAATCCTAATCATGTGAATGGCCACATTGATCGCTAAAATGTTTACAGGATTGTAACATTGATGAAGTTGTAAACGAGGAAGAGCCTACACCTTCAAAGAGTTCAAAGGATAAAAAGGCTAATAGACTAGATTCTGGAAAAGGATAAAAGTCTTGTGTTTAATATTACCAGCAAAATTCCATATAAAACTATTTTAAAAGGTTCAAGCTAAATAAATATTTTGATATTTTAAATGTTGTATTCCTATGAAGAAGATATTTAAATGTTACACGTATTATTCTTTTCATAATAATATGACACTTAAATATCTGTTTTCAGGACTTGATTATTAGTATTGATGATACAATTTTGATGTTGATAATGAATGTTTAGTTAAGAACTCAAAACCATAAAAGAAAAAAAAAGTGAAAAAAGAAGGGAAAAAAGTGCATTTAAGTGAAAAAAATTCTTATTTTTATTTGTTGAAGGGTGAGACCTTAAGGGTTTTCCTACTTGGTTGCTTAGCAAAATGCTAGCTTTTAGGCTAAGATCCTCACATCCTGGTTACCTCCGATGGGTATGTGTTCTTTATTATAAGCTTATATGTAAGTTGACTGACTCTAGGATAAATATTAAATTCAGGCAAATCAATCTTATATGTGTAATGTGACATTTTCTCATGTTATT

mRNA sequence

ATGTCTACTCTTGAGTTAACCACTGGCATATGTTTCGAGCTTGGATTTAGTTGTATGGTGCGACAAGGTGGTAAGGCGATACGTGTAAAGTTGAATATTCTTCATTACTTGCTATGTGTTCTAATGTGGGATACCCTTTGCTTGTTGTGTGATCTGACATTGAAAGATGCGATTCTTTCTGAGTCTGAGTTACGCATAACACCTTTTGTATTCTCTATAGAAAACTATTGCTTTCTATCTGTTGATTCTGATGAATGTGTGCAAACCATTAGCCCCATTCCTATCAATATCCAACTAAAGTTGCATGAGCTCAATACATTCTTGAGATCTACGAAGAAGGGGTCCAAAGAAAACTTACAAAGTTACCCACCACCGTCGCTCCTGCCATACCACACAACGTCATCCTCGCCGCCTGCTCCATCTCTTCTAGTGTTGTCGCCTTCATCTCTTTTAGATTGTAACATTGATGAAGTTGTAAACGAGGAAGAGCCTACACCTTCAAAGAGTTCAAAGGATAAAAAGGCTAATAGACTAGATTCTGGAAAAGGATAAAAGTCTTGTGTTTAATATTACCAGCAAAATTCCATATAAAACTATTTTAAAAGGTTCAAGCTAAATAAATATTTTGATATTTTAAATGTTGTATTCCTATGAAGAAGATATTTAAATGTTACACGTATTATTCTTTTCATAATAATATGACACTTAAATATCTGTTTTCAGGACTTGATTATTAGTATTGATGATACAATTTTGATGTTGATAATGAATGTTTAGTTAAGAACTCAAAACCATAAAAGAAAAAAAAAGTGAAAAAAGAAGGGAAAAAAGTGCATTTAAGTGAAAAAAATTCTTATTTTTATTTGTTGAAGGGTGAGACCTTAAGGGTTTTCCTACTTGGTTGCTTAGCAAAATGCTAGCTTTTAGGCTAAGATCCTCACATCCTGGTTACCTCCGATGGGTATGTGTTCTTTATTATAAGCTTATATGTAAGTTGACTGACTCTAGGATAAATATTAAATTCAGGCAAATCAATCTTATATGTGTAATGTGACATTTTCTCATGTTATT

Coding sequence (CDS)

ATGTCTACTCTTGAGTTAACCACTGGCATATGTTTCGAGCTTGGATTTAGTTGTATGGTGCGACAAGGTGGTAAGGCGATACGTGTAAAGTTGAATATTCTTCATTACTTGCTATGTGTTCTAATGTGGGATACCCTTTGCTTGTTGTGTGATCTGACATTGAAAGATGCGATTCTTTCTGAGTCTGAGTTACGCATAACACCTTTTGTATTCTCTATAGAAAACTATTGCTTTCTATCTGTTGATTCTGATGAATGTGTGCAAACCATTAGCCCCATTCCTATCAATATCCAACTAAAGTTGCATGAGCTCAATACATTCTTGAGATCTACGAAGAAGGGGTCCAAAGAAAACTTACAAAGTTACCCACCACCGTCGCTCCTGCCATACCACACAACGTCATCCTCGCCGCCTGCTCCATCTCTTCTAGTGTTGTCGCCTTCATCTCTTTTAGATTGTAACATTGATGAAGTTGTAAACGAGGAAGAGCCTACACCTTCAAAGAGTTCAAAGGATAAAAAGGCTAATAGACTAGATTCTGGAAAAGGATAA

Protein sequence

MSTLELTTGICFELGFSCMVRQGGKAIRVKLNILHYLLCVLMWDTLCLLCDLTLKDAILSESELRITPFVFSIENYCFLSVDSDECVQTISPIPINIQLKLHELNTFLRSTKKGSKENLQSYPPPSLLPYHTTSSSPPAPSLLVLSPSSLLDCNIDEVVNEEEPTPSKSSKDKKANRLDSGKG

Homology

[Close]

BLAST of MELO3C033897 vs. NCBI nr
Match: AAU04752.1 (DRP [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-04
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 149 SLLDCNIDEVVNEEEPTPSKSSKDKKANRLDSGKG 184
           +L DCNI+EV +EEEPTPSKSSKDKKAN  DSGKG
Sbjct: 625 TLEDCNIEEVADEEEPTPSKSSKDKKANGPDSGKG 659

[Close]

BLAST of MELO3C033897 vs. NCBI nr
Match: XP_008459523.1 (PREDICTED: LOW QUALITY PROTEIN: dynamin-2A-like [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-04
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 149 SLLDCNIDEVVNEEEPTPSKSSKDKKANRLDSGKG 184
           +L DCNI+EV +EEEPTPSKSSKDKKAN  DSGKG
Sbjct: 628 TLEDCNIEEVADEEEPTPSKSSKDKKANGPDSGKG 662

[Close]

BLAST of MELO3C033897 vs. NCBI nr
Match: XP_038889852.1 (dynamin-2A-like isoform X1 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 7.5e-04
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 149 SLLDCNIDEVVNEEEPTPSKSSKDKKANRLDSGKG 184
           +L DCNI+E+ +EEEPTPSKSSKDKKAN  DSGKG
Sbjct: 631 TLEDCNIEEITDEEEPTPSKSSKDKKANGPDSGKG 665

[Close]

BLAST of MELO3C033897 vs. NCBI nr
Match: XP_038889854.1 (dynamin-2B-like isoform X2 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 7.5e-04
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 149 SLLDCNIDEVVNEEEPTPSKSSKDKKANRLDSGKG 184
           +L DCNI+E+ +EEEPTPSKSSKDKKAN  DSGKG
Sbjct: 470 TLEDCNIEEITDEEEPTPSKSSKDKKANGPDSGKG 504

[Close]

BLAST of MELO3C033897 vs. ExPASy TrEMBL
Match: Q5DMX3 (Dynamin GTPase OS=Cucumis melo OX=3656 GN=DRP PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-04
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 149 SLLDCNIDEVVNEEEPTPSKSSKDKKANRLDSGKG 184
           +L DCNI+EV +EEEPTPSKSSKDKKAN  DSGKG
Sbjct: 625 TLEDCNIEEVADEEEPTPSKSSKDKKANGPDSGKG 659

[Close]

BLAST of MELO3C033897 vs. ExPASy TrEMBL
Match: A0A1S3CBL4 (Dynamin GTPase OS=Cucumis melo OX=3656 GN=LOC103498639 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-04
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 149 SLLDCNIDEVVNEEEPTPSKSSKDKKANRLDSGKG 184
           +L DCNI+EV +EEEPTPSKSSKDKKAN  DSGKG
Sbjct: 628 TLEDCNIEEVADEEEPTPSKSSKDKKANGPDSGKG 662

[Close]

BLAST of MELO3C033897 vs. ExPASy TrEMBL
Match: A0A5D3BQY1 (Dynamin GTPase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001290 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.1e-04
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 149 SLLDCNIDEVVNEEEPTPSKSSKDKKANRLDSGKG 184
           +L +CNI+EV +EEEPTPSKSSKDKKAN  DSGKG
Sbjct: 628 TLEECNIEEVADEEEPTPSKSSKDKKANGPDSGKG 662

[Close]

BLAST of MELO3C033897 vs. ExPASy TrEMBL
Match: A0A5A7TBC1 (Dynamin GTPase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001340 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.1e-04
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 149 SLLDCNIDEVVNEEEPTPSKSSKDKKANRLDSGKG 184
           +L +CNI+EV +EEEPTPSKSSKDKKAN  DSGKG
Sbjct: 654 TLEECNIEEVADEEEPTPSKSSKDKKANGPDSGKG 688

The following BLAST results are available for this feature:

BLAST of MELO3C033897 vs. NCBI nr


Match Name	E-value	Identity	Description
AAU04752.1	5.8e-04	80.00	DRP [Cucumis melo]	[more]
XP_008459523.1	5.8e-04	80.00	PREDICTED: LOW QUALITY PROTEIN: dynamin-2A-like [Cucumis melo]	[more]
XP_038889852.1	7.5e-04	77.14	dynamin-2A-like isoform X1 [Benincasa hispida]	[more]
XP_038889854.1	7.5e-04	77.14	dynamin-2B-like isoform X2 [Benincasa hispida]	[more]

BLAST of MELO3C033897 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q5DMX3	2.8e-04	80.00	Dynamin GTPase OS=Cucumis melo OX=3656 GN=DRP PE=3 SV=1	[more]
A0A1S3CBL4	2.8e-04	80.00	Dynamin GTPase OS=Cucumis melo OX=3656 GN=LOC103498639 PE=3 SV=1	[more]
A0A5D3BQY1	8.1e-04	77.14	Dynamin GTPase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00129...	[more]
A0A5A7TBC1	8.1e-04	77.14	Dynamin GTPase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001340...	[more]

BLAST of MELO3C033897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033897.1	MELO3C033897.1	mRNA