MELO3C033896 (gene) Melon (DHL92) v4

Overview
NameMELO3C033896
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPentatricopeptide repeat-containing protein
Locationchr09: 12959203 .. 12963068 (+)
RNA-Seq ExpressionMELO3C033896
SyntenyMELO3C033896
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCATATAAACAAAAAATTTCGGCTGTTGAGTACCGATTCGGTAAGTTTTATGATCTTTATTCACTAAATTTGTTAGGGTATATAATGTATATTACAGAACATTTTGACTGGTTATGTATTGAACTGTAATATAGTTGATAGTTTTAGTTATATGTTTATTTGACTATCTTGGACTTTTTAAACTGGAATGAACATATGTGAACTAGGGGGAAACTTTTTGCTTTAGCTATTAGATAGTGTACCTTGCAGGCACGGTGTCCTACGGAATCACCACATATTGTGTTCCTACGAGATCACTAGACTGATTAGATGAATCCTACAAGATCACTAGACTGATTAAGTGTTCCCACGAGATCACTAGACAGATTGACGTGTATCCTATAGGATCACAAGACTGTTATGGTGTAGGACACTTCATAATAGAAAGTTAACAATTTTTACCCTTAACAAGACCAGTAATGGGTCTTTTGCTGGGTATAATTTTATGCTCACCCTTTTCATGTTTAACTTTTTCAAGCAAAGGTAATATGAGAGCGAGGCAGACCGTGAATAACAAGAATGGCTCGTGAATACCATATGAGAACCTTTCAAATGCTTCTGCTTAACGTTTTGCTTGTTTTTAAGTTTTGATGATTATTACAGTGGGTTTTATGTTTAGAACTATTGTATGTTTCATTTTGACTTAAAACAAAAACAATTTTGTCTTTTCATGTTTATTTGAAATAGGGCCCGAACTAATTTTCTTTGATGTTCATTAAATAAATTTTATAATCTTTTGTATATTAACTATTTAATTTGGTCTCTTGTCACTACAAGAAAAGTGATCCATTATGACAGTTGATTCCATCTCAAGTTGAAAGGAGAGAAGAAATAAATGCCATCAAATGTCAAAAAGTGCGTTTTTGGTGGAAAAAGACGAAAATTTTTTGGATTTGAAGAATTTATGACAATTTTTAAGTGTCATGAATCTATGAAAATTTTTAAATATCATTAAATATAAATAATCAAATTATAAGTATTTATTTTAAATTACATAAAAAGAAAGAAAAAGAATAGGGAGGGAATTGAAGTTTCTTTTTCGTTCAAGCGTCCCCTCTTGTTCTCTCGTCGACTGCCCCATCACCATCTTCTTCCTCTTCTTTTTTCTCCGCTAGGGCGCAACAACAATCATCCCAAATTTCGTGCTCCTTCCTCTTCTCCCTCTGAACCTCTTTCCCTCGTCGGTTCTCACACTCACAGTATTTTATCTGTAAGTTTTTCTAATCTTTTTGAACTTTATCGTCGACTTCTCATGTTGGTTTTTGGGTTCTTGATTTCTCTTCCATGCCCCCTAAGTTTACCCTTTTCTCTAAAAAAAAGTTATCCCCTAAGTTTCCTTTCCTTTCTCTCCCCCTTCATGAGTTTTTCCTCCATAGCCTTCAGGATGAACTACTCCGACAAAATCGTCCAAGGAATAAAAACTCTGACTAATAGCTCCGTTTTTCTCTACCCAAGATACATTTCTTCTTCTTCTTAGTTTTTCTCCATTTTTCTCTGCCATAATTTCTCTACCCTAGTTTCATTTACAAATCTCACCATTCATCACCATTCGTTTGTCGATTTGGACTTCAAGTCAAAGAGCGATCTTGTCGTATTTCATCCCGTTGAATCCCTTTAAGAAACTATAATTTTTCCTTCTCAATCTATCTTAGTTTTTTTTCTTTCTAAGTTGCTATGAGATAGAGATAGAGATAATAAGTATTGTTGCTGTCTTACTTACCAGTGGAAGCCTTCGAAGCTTTCAAGGATGTTGTAAGCTTCTACGTCTCTGAACTTAACATTCTCAGTTGGAATATCTTTGCTTATGTCTCAATTTGAAGATTGTTGCATGTTTTCTCAAGGACATAGTAAGATGGTCTAAGACTTACTTTTCCAGGATTTTCTGTTGGAATTTGGTAATTGCCTGTATTGTTTTATTTTTTATTTTTTCTTTTTTTAAAGTTGTTCTAGTTTTCTACATTTAAAGTTTTGATATGGCTCAATTTACATTGTTTCCTCCAAAACCAAACGTAGTAATTTATCTTTTTGATTTTACATAAAGGAAACATAGAGATATTGGTGAGTAAAACAGACAAGAAAAACTTATTCTAGTTGTGGTTACTACGCTTTAAATAGGAAAAACGTGTTACAATGCCCTCCACCACTCCATTTTTTTCATACCATTTGATGTCATCTTATTCAGGTTGCTCCAAAACATTGAAGATTGGATATAAAATATAGCCAAGATGCAGTTTTACTGCTTTCTTTGATGAACTTGCCTAATGGTATTTGAGTATTGGAGTATTCCCTTTTGTTATGGAAATAATAGTGCTTATTGTTGCACCATACTATGAATTAGCTATGCTTTTTGAAAAATATTTGCTGCAACTGATTCCCTCTCTGTCTAAGAACGGTTCCGTTTGTTGTAACCCTTGATTAATCATACTATTTATTTCTAAAGGAAGCGAACTACTATTGATGAACATAACATGCAGAGCATTTTTTAAGAAGCAGAAGTAGTTTTGTAAGGAAGGTTTTGAAATGGTCTTCCAATGATGTGATGTATTCATGCTCTCTTGCTGGGAACTGTGGTCTTGCAGAGCAACCAATGTAACAGGTCTTATTTCTTTCCTTCGAGATCATTTCTATTTAATGATACAGCCAATTGGTACAAGAAATCTTGAATTGAGATAATATATATCTTTCATAATGTTGTCTCTTGTTACCAAAAACTTTTACTTTTATGAACACGTAGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATTCATTAAATAATGGGTTTCAAATGCTTTAAATAGTTGTCACTTTAAGTTATTTAGATTTTCTTATTCTTGCTCAGATTGCATCATTGGTGAATGATTTTTGTTATTTTATACATTGTGCCTCGTGTTCGTACTTTTACACTTAATTTAGTTAAGTATTTCATGCGTACTGACGAGACTAGGACCATGTCTTTGAAGATGCATAAACTTGGATTGCAACCGACATTCCACACATTTGATGGTTTTGTTAGATTAGTTGTTTTAGAGAGAGGTTTCAGTGCTGCATGGAAATAGTAAGTTATTTTGGCTTTGATTAGATCTTGATTCGTTACAAGCTAATCTTTTTCATTTATTGGAATACATAACACTGATGTTGGAGTATGTCTTACATTAAAGCGAAACTAATCATCATTCTTTTTGGCTCTGCATTATTAGGATGTTTGAGAATAGCTGTTATGATAGAAGATGTTCTTTATACAAAATTGCTTTATCACTCTCATTGAAGTACTAAATATATATATGGTTTTAGGAGAAACATAGAGAGACTCAAACATTCTATACTTCTAGATTTTGTGACCTTCAGAAATTGTTACTAAATATATATATGGTTTTGGATGTATTCTTGTTGAACAATAGAATGTCCATATGTCCAACTAAGTTTAATTAATTTTCGTACTATTTAATGTTGTCATCGTGGTTGAACAAAACCATTATTTATTGTTTCTCTCATTCACAGTAAAATATGTTTCTGTTACTCATTTCCATTAATTTCTAAAGAGGAGTTACTCAAATAGAAGACGTTCAGATTCTTATTGCAGATTTGGGTATCATAAACTTTAGTTGTCACTAATATAATCACGCCCTTTCTCTAACCTACTAGATCTCTAGTAATCAAAACTAGATTTTTGGTGTTAAGTTTGCATAAGAGTTTTCTATTTTTCTCATATTCTTATATTGATGTGTAGAGTCATACTCTAAAATTTCATTTTTTTTCTTACTAGGTTTTGCAAGAATCCATTGGAGCAATGAAGCCATATTGGAGCAATTGA

mRNA sequence

ATGACGCATATAAACAAAAAATTTCGGCTGTTGAGTACCGATTCGAAAAAGAATAGGGAGGGAATTGAAGTTTCTTTTTCGTTCAAGCGTCCCCTCTTGTTCTCTCGTCGACTGCCCCATCACCATCTTCTTCCTCTTCTTTTTTCTCCGCTAGGGCGCAACAACAATCATCCCAAATTTCGTGCTCCTTCCTCTTCTCCCTCTGAACCTCTTTCCCTCGTCGGTTCTCACACTCACATTAAGTATTTCATGCGTACTGACGAGACTAGGACCATGTCTTTGAAGATGCATAAACTTGGATTGCAACCGACATTCCACACATTTGATGGTTTTGTTAGATTAGTTGTTTTAGAGAGAGGTTTCAGTGCTGCATGGAAATAGTTTTGCAAGAATCCATTGGAGCAATGAAGCCATATTGGAGCAATTGA

Coding sequence (CDS)

ATGACGCATATAAACAAAAAATTTCGGCTGTTGAGTACCGATTCGAAAAAGAATAGGGAGGGAATTGAAGTTTCTTTTTCGTTCAAGCGTCCCCTCTTGTTCTCTCGTCGACTGCCCCATCACCATCTTCTTCCTCTTCTTTTTTCTCCGCTAGGGCGCAACAACAATCATCCCAAATTTCGTGCTCCTTCCTCTTCTCCCTCTGAACCTCTTTCCCTCGTCGGTTCTCACACTCACATTAAGTATTTCATGCGTACTGACGAGACTAGGACCATGTCTTTGAAGATGCATAAACTTGGATTGCAACCGACATTCCACACATTTGATGGTTTTGTTAGATTAGTTGTTTTAGAGAGAGGTTTCAGTGCTGCATGGAAATAG

Protein sequence

MTHINKKFRLLSTDSKKNREGIEVSFSFKRPLLFSRRLPHHHLLPLLFSPLGRNNNHPKFRAPSSSPSEPLSLVGSHTHIKYFMRTDETRTMSLKMHKLGLQPTFHTFDGFVRLVVLERGFSAAWK
Homology
[Close]
BLAST of MELO3C033896 vs. ExPASy TrEMBL
Match: A0A5A7V601 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5463G00050 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.5e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 95  KMHKLGLQPTFHTFDGFVRLVVLERGFSA 124
           +MHKLGLQP+ HTFDGFVR VV ERGFSA
Sbjct: 433 QMHKLGLQPSSHTFDGFVRSVVSERGFSA 461

[Close]
BLAST of MELO3C033896 vs. ExPASy TrEMBL
Match: A0A1S4E3A7 (pentatricopeptide repeat-containing protein At1g76280 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103500041 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.5e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 95  KMHKLGLQPTFHTFDGFVRLVVLERGFSA 124
           +MHKLGLQP+ HTFDGFVR VV ERGFSA
Sbjct: 366 QMHKLGLQPSSHTFDGFVRSVVSERGFSA 394

[Close]
BLAST of MELO3C033896 vs. ExPASy TrEMBL
Match: A0A1S3CEN8 (pentatricopeptide repeat-containing protein At1g76280 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500041 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.5e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 95  KMHKLGLQPTFHTFDGFVRLVVLERGFSA 124
           +MHKLGLQP+ HTFDGFVR VV ERGFSA
Sbjct: 366 QMHKLGLQPSSHTFDGFVRSVVSERGFSA 394

[Close]
BLAST of MELO3C033896 vs. ExPASy TrEMBL
Match: A0A1S3CER8 (pentatricopeptide repeat-containing protein At1g76280 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500041 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.5e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 95  KMHKLGLQPTFHTFDGFVRLVVLERGFSA 124
           +MHKLGLQP+ HTFDGFVR VV ERGFSA
Sbjct: 310 QMHKLGLQPSSHTFDGFVRSVVSERGFSA 338

[Close]
BLAST of MELO3C033896 vs. ExPASy TrEMBL
Match: A0A1S3CEF2 (pentatricopeptide repeat-containing protein At1g76280 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500041 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.5e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 95  KMHKLGLQPTFHTFDGFVRLVVLERGFSA 124
           +MHKLGLQP+ HTFDGFVR VV ERGFSA
Sbjct: 366 QMHKLGLQPSSHTFDGFVRSVVSERGFSA 394

The following BLAST results are available for this feature:
BLAST of MELO3C033896 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C033896 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C033896 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V6019.5e-0482.76Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4E3A79.5e-0482.76pentatricopeptide repeat-containing protein At1g76280 isoform X4 OS=Cucumis melo... [more]
A0A1S3CEN89.5e-0482.76pentatricopeptide repeat-containing protein At1g76280 isoform X3 OS=Cucumis melo... [more]
A0A1S3CER89.5e-0482.76pentatricopeptide repeat-containing protein At1g76280 isoform X2 OS=Cucumis melo... [more]
A0A1S3CEF29.5e-0482.76pentatricopeptide repeat-containing protein At1g76280 isoform X1 OS=Cucumis melo... [more]
BLAST of MELO3C033896 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033896.1MELO3C033896.1mRNA