MELO3C033868 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033868
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr09: 10156263 .. 10162404 (+)
RNA-Seq Expression	MELO3C033868
Synteny	MELO3C033868

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAATTTGTCATTCTCAGTATGTCAACCTCAACCCGTATCCCAAGGCATGTCTGGACGAAGAAGGAGGAGGGCACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATTGGGGGATGGAAATCCAATAATGGTACATTCCGGCCAGGTTACCTGACCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCGTGTCTGCGCAACGACTGTAATTGACTGAAGAATAAAGACACTGAAGCAGACATTCCAAGCCATCGTCGAAATGCGGGGGCCAGCGTGCAGTGGCTTTGGGTGCAACGATGAAGAGAAATGCATAATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGGTAAGGAAAATAATATAAACGTCACACGACGTTCGCAATGTACATTTACTTCACAATTTTTCTATCAGTACTCATAAGTGGTCCTTTTTTTCCCCACAGTCGCATCCTGCAGCGAAGGGACTCCTAAACAAACCGTTTCTATATTATGACGAACTTACATATGTGTTTGGTCGCGATAGGATGACGAGTCGATTCGTTGAGACATTCGCCGACGTGGCGTCAACGAGCCTGGCGGGTATGAGGAGTTTGACATGTCGGATGGAAACGAGGACTTTCCGTCCGTGTACAGCCAGTGGATTGACATGTCGTAGGACGATGTACGCGCATCACGACTTTTTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGAATCCAAGAGGAGGAGGGGAAGTCAGCGAGAGGTGGATGTTAAATGTATACATCTGGCACTTGACCAAACGAACGAGCAACTCAGGATGATTGCGGAATGACCTGCACGCGTCCTTGCCAATGACAACCATGTGCGCACGGAATTCTTTAGCATATTGCGTGAGATGTTGGAACTAACGAGTTTGGATAGGGCATTGTTGCAAAGGCATCTTCTGTTTCGTATGGACGACTTGCGGGGTTTCGTACTCAAGCCTGCGGATGAGACGGAGGGCTTTTTGTAGAGTCCTCCTATGAGACACGACGAGATAGTTTATGTTTGTACTGACCTAGGTTGCTTCTTATTTGCTTACTTTTTTTGCTATATGATATTGACTGTTTATGCTTTTGCTATTGTAGACAACTACTTTTTTCCTCATGTACTCGAGTTGTTTATGCATATGTATTTTTTTTTTTGTCCTTCTACATCCGTTCAATTCTGTTCATAATGTTTATTTAAAATTAAGAAAAATAGTAACAATTTCACCCAGGCGTTATACCACGTAATTATATATGTTCAAAATGAGGGGACATCGCTATCGCTAATTACAAATAGGAAATAATTAATTTGTATTTTTAGAAAATGAATTTTAATAAATTTTTCACAATATGTGCAGAAATTAATTCCAAATTGGACAATTATCTTTAATAATTTAATAACATCACACATAGAATAAATTATTTACAATAAGACGAGTTCGATGCTTTCGTAAAAAAGTATGCAATAAGAATTTTTTTATCATATTTACAATCTCATTTAAAAAATATTATACTACATAAAAAAATATTAACCCAACCCATATAACACTTTACCCAAATAAATTTTATCATAAATTCCATGTAAAACTATTACCTGACTCTTCCCCAAACACATCTATAAGATATCATTTTCTATAAGCTTAATATTTTATGCCAAAATAGTCACCCATTATAAAAACTCAAATAAAAAAAATTTGCCGCTCAATATTTGAGTACGCGCCCCTCTCTTTTGCTCAAGCAGACGGCCGGCTGCGATACCCACGTCCATTCTCACACGCCCGACCGCCCTCCGTTCAACCGACGACGCCGCCGTCGTTGTGTCTGTCCAATCGCCATTGTCGCCAAAGAATAGTGGAGGTTGAGCAGTTTCCCTGATTCAGAAGAAATCTCCTTCTCTAAAGAAGCTTGCGGCCTCGAAGCATCTGGAAATTGATCTTAGAAGACAGGAGTTGGTCTCGTGGCTAGGGCTTTAACCGTTCGGAATAGAAATTCTCGGTCAACGAAGTGGAGTGGGCTGAAAGCAGCAGAGGAAAAATTTTCTTTCAAGAGAACCTGGATCCTTTGGTTCGGGAAAAGCTGCTTCACGCTCTTGCCTCGGTTGCTTTGCAAGCTTGCTTCTCAGCTTGCTTTGCTCTAAGTTGACCTCTTACCTTTGAAAAAGGTCAGACCTATTCTGAAGAAAGGATATTTCACCTTCGTTTACAATTGTATTTGAGAAAGAAAGTCCAGTGATTCTGGCACTGTCGTCGTCTTCAAGGCAACACTCCAAAAAAGTTAGGGTTGTTTACATTTCAAGCTACTTGGTGAAGATTTTCCTTAAGATAAGAACAAAGACTCTTCTTCTTCTTCTTTCTTTCTTCTACATCATTTTCCAACTCCAGTTGCTTTTGGATTTCGCTTTGGGATAGCTCATTTTAGATAGGGCTATTGAAAAATGAAAGGAGAAACCAAACCCAAGCTTATGGAAAAAAAATTTCCTATCTCTCCATTTTTATTTGAGTCCAAAAGGAAACCAAAGCATTGATTGCTTAGGGTGAAAATGAAAGGAACAAGTTTACATTCCTTTGTCTATTGCAACACACTCTCCTCTCTCCCTCACTCATTTTCTCAGTGTTGCTATTCTGGGAATTGTGTTTGTAAAGAAATAGGTGATCCGTTGCAATGTGGGAAATTATATGTTGAAATTTGAGATACTTTAGTATTTCAAGCTTCTTCAGGTATTCTTACGTATGTTAGTTTTGTGATTACTCTCCTATATTTCATCAGATTCAAGATCTTGATTGTAACTTTATTGAAATTGGTGGGAGGTTTCATCTTCCTTTTCAATATTTCATTCTTCATAAAATTGGAAGTTAGTGGTTTCTTATAATGTCTAAAATGAGTCATTATTTTCTGATATCGAGTGGAAAGATTTGATTTTAAACCAAAAGGAAGTAAGTTGGTTCTAAGTGAATTATGATTTCTAAGTTTTAATAAAAAAATTGACGTTCGCCCATAATTTATATCTCAAAATTTTGTATTTTTTAAGATTTCAGTTTCTTACCGATAGAACCGTAAAGTTCTGTCTTCTTTTTCCATTTGTGTTTTGACTTGGGACAACCAAGTGTGTGAGTATTTAGGACAAGTTGAAAGTTACTTTTAACTTTTTTTCTTATATAGAAAAAAAATAGAAAGCTCACGAGGATGATGTTCTAATTAACACTTATCCTGATGTTGCAGGTATTCCCCAGAGAAAATATGGTACATTGATCAAATGCTGAAGGTTCTCTCTGTGGTATAGTTTAAATTCTCATATGTTTTTCTTTATAATCTCCTATCTTTTAGATTCTTTAAATCATTTCTCTTAGATATTTAAGGTTCTTTCTTAGATTCCTCCTTATTTTCTCTTCAATACTAACTTGGAGGTCTCGTGTTTTTCAGTTTAATATCGCGAATCTGACTATTGGATGCCAGAAGAAGCTAGAAATTGATGATGACCAGAAACTGTTAGCTTTCTAATCTCCTTTTTCTTCTTCAATCTGTTGTTTTCATCCCGAATGTGCTTTTTATTGTTCATATCTTTAACATTTTACATAAATACATTGGATTGGTGGCGTGAAAGTGTTACGTTTGCTACTAGAATCCATGTATTTTGTTTTAGCAACTCTATTTTGTTTTACATAAATATACATTGGATTGTTTTAGCATCAAAATCTCTGACCGTCCTCAACGTCTACCCTGTTTGGATCAGCTTGAATTGGACCTTTCTTATATTTTCTAATTCACGATATTTATATTTTTAACTTATTTTGAGTAGTCTGTTTCAGGTAGTGGAAGCTCTATTTTTCATGTGTTTTAAAAAAGATATACGCTTTGTGAAGCATACACCCCTTTTCAACATGTCAGGGTTGTCTTGATCTTTCTTCCATTTGACAGGTTCTTGACAACAAACCTGATATTATTAGAGAAAATTATATGAATGAACTTTGCATTCTTCAAAATGATGTTCTGCCGTTTCCTAACGTGGTTGAATGTTATTAGTTGTTAATAAATTTGAAACATCCTTGCACAGAAACTTGCACATTTTTGATAATATCATGTGGTCTAGCATTGTGAAGGTTGCTTTCAGTATCATAGAAGAAAAAGTGGGTCGTCCTCTTGAAGCTATTTTTAGAAAATTTTCGTCACAGATAATAGCAGCTGCGAGTTTGGGTCAAGTTTCCCGAGCTACTCCCCGAGACTTTGGCGAGGATGTTGCTATCAATGTTCTGATTAATTACTATAACATTATTCTTTTCCTCACATTAGAAGCAATTTGGGAAAATTATGCTGGGAAAGGGTTATCTGATTTTAATTTCCTAAGTGTGACTGGTAACGTCACTAGTACTATATATCTAGTTGATTATTGGAAAACATCTTATCTCAGTAGTGAATTCTTAGCTATATATACAGTAATTGAGTGCCGATGTTGGTTTTTCTGGCTGGCAGTTTTTTATTCTTCCAAATATCTTCAACCAACTAAAAAAAACTAATTGTTATATAATGAATAAAATTTGGAGTAAATAGTGAGGATTAAATATGCTTCGGTATCAAGTGGATAGGAGGTTTTCCTAGGTTGAGTATTAATGCCTTCAATCCGTTTTACAGGAACGAGATTGTAAATAAATGAGTGTATCATTGTCCCACATCTGGAATGGTTCCAATGAGTGATTGAAGTGCGCTCTTCTTTTTTCCTTTGGTAGGTGGGGGGAACTTTGAAGTAATTGGTTTCATTACTTCCTTGGTTAACTGAACTGTGCAGTTTGATGTGAGTTTGATCCGAACAGCTGACTGCGAGTTTGACGTGAACGACTCAGCAAGCTCCTAACTACAGTAAGCTTGGCAAGTTTTTGGATACGTAATATTATTACTTGTTTTGGAATTTGTCTCTTTCTTCCTGTCATTATTTTGGAGTTATTTTTTTTTATTGATTTGTTTTCTTTGGGACTTTAGAGGTGAGGATCACGTGGAGCAAATGGCATTACATTAGATAAGAACAGTTTTAAAATCTCAGGAAAATGGTTACTGTTAGTTTACAAACAGTATGCCTTTAGAGTTTCATTGATCTTAAAGAAGTTATTTTTTGAACAAAACGCAAGGGAAAAAGCTCATATGGTTTTATCCTTATAAAACATCTTTAGTAATTTATATTTTGTCTCATTTAGATTTCTCTCTCATTTTGTGCATTACACCAAAACTGAAAAGAGAAACTGTGGGTTGGGTGGTTTTTTAGTTACTAGTGAGTGGCACGGGTACTGTAACAACAACATAATAATTGGATCGTTTTCATTTTTACTTCCATTTTGGATGATGAATGCTTTTGGTTTGAAATCCAATCTAGCTACCGGGTTATCTTCCTATTTGATAGACTTGAACGTTCAAGCTTACAACATATAAGGGTGGAACATCCTCCCCTTGCATATATGCAGTTCCAACTTAACCATGAACATATTTTTCTCTTTTATCTCTGTTAAGTATTTACATCTTTTTAAATGGATTACACTAACTCTATGCCCTTAAAACAAAACAAGACCATGGTTAAACCGTTTGGCTGTGTACTCTCCTGTCTTCATTTTATTTTTAGCTCTTTTGAAATCACATTTTATTTGCGTTTGTTTTCCTCGTATCAATATTTTGTTGAACATTTGTAGATCTTGTCATTGCAAATATGAATTCCTCAAGTACTTTTTATTCTCCTAGATATATTACAGGACCATTACAAATAGCTCAAATAATATCTATCCATAAATATGGTATCTGTTAGCAAATCTATTGTCGTATGTTTGGTGAGAACTGCTGGAAATTGAAGATAATGGAGTACTCCAAATTTTTTAAGAAAAGAGAGCATTAGATGAATCAATTTTGAGCATCTTTTTTTCGTCGGTACCTTGATAGCTTCTATATAGGGTCACCTTGGTAAAAGGGAAGGATGTCACGTTTGAATTTGATCTTACATCATTCCTGTCAATAAAAAGTACATGAACATTTTGATTTTTTTGGGCTTTTTGAAATAATATAGTATTGGAAGAAGCAACGTCCTGTGTGGCTTTAAGATTGTGGAAGATAGATTTGTCGTCACGTACTCGAGACGACACGGAGTGA

mRNA sequence

GTAATTTGTCATTCTCAGTATGTCAACCTCAACCCGTATCCCAAGGCATGTCTGGACGAAGAAGGAGGAGGGCACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATTGGGGGATGGAAATCCAATAATGGTACATTCCGGCCAGGTTACCTGACCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCGTGTCTGCGCAACGACTACACTGAAGCAGACATTCCAAGCCATCGTCGAAATGCGGGGGCCAGCGTGCAGTGGCTTTGGGTGCAACGATGAAGAGAAATGCATAATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTAAACAAACCGTTTCTATATTATGACGAACTTACATATGTGTTTGGTCGCGATAGGATGACGAGTCGATTCGTTGAGACATTCGCCGACGTGGCGTCAACGAGCCTGGCGGGTATGAGGAGTTTGACATGTCGGATGGAAACGAGGACTTTCCGTCCGTGTACAGCCAGTGGATTGACATGTCGTAGGACGATGTACGCGCATCACGACTTTTTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGAATCCAAGAGGAGGAGGGGAAGTCAGCGAGAGACGGCCGGCTGCGATACCCACGTCCATTCTCACACGCCCGACCGCCCTCCGTTCAACCGACGACGCCGCCGTCGTTGTGTCTGTCCAATCGCCATTGTCGCCAAAGAATAGTGGAGGAGTTGGTCTCGTGGCTAGGGCTTTAACCGTTCGGAATAGAAATTCTCGGTCAACGAAGTGGAGTGGGCTGAAAGCAGCAGAGGAAAAATTTTCTTTCAAGAGAACCTGGATCCTTTGGTTCGGGAAAAGCTGCTTCACGCTCTTGCCTCGGTATTCCCCAGAGAAAATATGGTACATTGATCAAATGCTGAAGGTTCTCTCTGTGATAATAGCAGCTGCGAGTTTGGGTCAAGTTTCCCGAGCTACTCCCCGAGACTTTGGCGAGGATGTTGCTATCAATGTTCTGATTAATTACTATAACATTATTCTTTTCCTCACATTAGAAGCAATTTGGGAAAATTATGCTGGGAAAGGGTTATCTGATTTTAATTTCCTAAGTGTGACTGTATTGGAAGAAGCAACGTCCTGTGTGGCTTTAAGATTGTGGAAGATAGATTTGTCGTCACGTACTCGAGACGACACGGAGTGA

Coding sequence (CDS)

ATGTCAACCTCAACCCGTATCCCAAGGCATGTCTGGACGAAGAAGGAGGAGGGCACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATTGGGGGATGGAAATCCAATAATGGTACATTCCGGCCAGGTTACCTGACCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCGTGTCTGCGCAACGACTACACTGAAGCAGACATTCCAAGCCATCGTCGAAATGCGGGGGCCAGCGTGCAGTGGCTTTGGGTGCAACGATGAAGAGAAATGCATAATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTAAACAAACCGTTTCTATATTATGACGAACTTACATATGTGTTTGGTCGCGATAGGATGACGAGTCGATTCGTTGAGACATTCGCCGACGTGGCGTCAACGAGCCTGGCGGGTATGAGGAGTTTGACATGTCGGATGGAAACGAGGACTTTCCGTCCGTGTACAGCCAGTGGATTGACATGTCGTAGGACGATGTACGCGCATCACGACTTTTTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGAATCCAAGAGGAGGAGGGGAAGTCAGCGAGAGACGGCCGGCTGCGATACCCACGTCCATTCTCACACGCCCGACCGCCCTCCGTTCAACCGACGACGCCGCCGTCGTTGTGTCTGTCCAATCGCCATTGTCGCCAAAGAATAGTGGAGGAGTTGGTCTCGTGGCTAGGGCTTTAACCGTTCGGAATAGAAATTCTCGGTCAACGAAGTGGAGTGGGCTGAAAGCAGCAGAGGAAAAATTTTCTTTCAAGAGAACCTGGATCCTTTGGTTCGGGAAAAGCTGCTTCACGCTCTTGCCTCGGTATTCCCCAGAGAAAATATGGTACATTGATCAAATGCTGAAGGTTCTCTCTGTGATAATAGCAGCTGCGAGTTTGGGTCAAGTTTCCCGAGCTACTCCCCGAGACTTTGGCGAGGATGTTGCTATCAATGTTCTGATTAATTACTATAACATTATTCTTTTCCTCACATTAGAAGCAATTTGGGAAAATTATGCTGGGAAAGGGTTATCTGATTTTAATTTCCTAAGTGTGACTGTATTGGAAGAAGCAACGTCCTGTGTGGCTTTAAGATTGTGGAAGATAGATTTGTCGTCACGTACTCGAGACGACACGGAGTGA

Protein sequence

MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCRVCATTTLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGLTCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSERRPAAIPTSILTRPTALRSTDDAAVVVSVQSPLSPKNSGGVGLVARALTVRNRNSRSTKWSGLKAAEEKFSFKRTWILWFGKSCFTLLPRYSPEKIWYIDQMLKVLSVIIAAASLGQVSRATPRDFGEDVAINVLINYYNIILFLTLEAIWENYAGKGLSDFNFLSVTVLEEATSCVALRLWKIDLSSRTRDDTE

Homology

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BLAST of MELO3C033868 vs. NCBI nr
Match: KAA0047431.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04139.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 600.5 bits (1547), Expect = 1.1e-167
Identity = 296/303 (97.69%), Postives = 296/303 (97.69%), Query Frame = 0


Query: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60
           MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR
Sbjct: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60

Query: 61  VCATT-------TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120
           VCATT       TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG
Sbjct: 61  VCATTVIDCRIKTLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGL 180
           LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGL
Sbjct: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGL 180

Query: 181 TCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSERRPAAIPTSILTRPTALRSTDDAAVVV 240
           TCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSERRPAAIPTSILTRPTALRSTDDAAVVV
Sbjct: 181 TCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSERRPAAIPTSILTRPTALRSTDDAAVVV 240

Query: 241 SVQSPLSPKNSGGVGLVARALTVRNRNSRSTKWSGLKAAEEKFSFKRTWILWFGKSCFTL 297
           SVQSPLSPKNSGGVGLVARALTVRNRNSRSTKWSGLKAAEEKFSFKRTWILWFGKSCFTL
Sbjct: 241 SVQSPLSPKNSGGVGLVARALTVRNRNSRSTKWSGLKAAEEKFSFKRTWILWFGKSCFTL 300

[Close]

BLAST of MELO3C033868 vs. NCBI nr
Match: KAA0056560.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 330.1 bits (845), Expect = 2.7e-86
Identity = 165/214 (77.10%), Postives = 177/214 (82.71%), Query Frame = 0


Query: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60
           MSTS R PRHVWT++EEGTLVECLMEL+S+GGWKS+NGTFR GYL QLVRMMAEKLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELMSMGGWKSDNGTFRSGYLAQLVRMMAEKLPGCQ 60

Query: 61  VCATT-------TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120
           V ATT       TLK+TFQAI EMRGPACSGFG NDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTS-LAGMRSLTCRMETRTFRPCTASG 180
           LLNKPF YYDELTYVFGRDR T RF ETFA+VAS   +A M  L   METRT RPCTA  
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFANVASNEPVADMTDLIWGMETRTSRPCTARE 180

Query: 181 LTCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSE 207
           LT RRTMY H D  ALQRVGPD+V+ RG GEVSE
Sbjct: 181 LTSRRTMYVHPDLRALQRVGPDQVDRRGRGEVSE 214

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BLAST of MELO3C033868 vs. NCBI nr
Match: KAA0048382.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 3.8e-85
Identity = 163/214 (76.17%), Postives = 172/214 (80.37%), Query Frame = 0


Query: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60
           MSTS R PRHVWT++EEGTLVECLMELVS+GGWKS+NGTFRPGYL QLVRMMAEKLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VCATT-------TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120
           V ATT       TLK+ FQAI EMRGPACSGFG NDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRPFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSL-AGMRSLTCRMETRTFRPCTASG 180
           LLNKP  YYDELTYVFGRDR T RF ETFADV S     G       METRT RPCTA  
Sbjct: 121 LLNKPLPYYDELTYVFGRDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRTSRPCTARE 180

Query: 181 LTCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSE 207
           LT RRTMY H D  ALQRVGPD+V+ RG GEVSE
Sbjct: 181 LTSRRTMYVHLDLLALQRVGPDQVDRRGRGEVSE 214

[Close]

BLAST of MELO3C033868 vs. NCBI nr
Match: KAA0050400.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 305.4 bits (781), Expect = 7.0e-79
Identity = 154/213 (72.30%), Postives = 165/213 (77.46%), Query Frame = 0


Query: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60
           MSTS R PRHVWT++EEGTLVECLMELVS+GGWKS+NGTFRPGYL QLVRMMAEKLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VCATT-------TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120
           V ATT       TLK+TFQ I EMRGPACSGFG NDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGL 180
           LLNKPF YYDELTYVFGRDR TSRF ETFADV S    G      R +           L
Sbjct: 121 LLNKPFSYYDELTYVFGRDRATSRFAETFADVGSNEPGGGYD---RFDMGDGNEDFPPVL 180

Query: 181 TCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSE 207
           T RRTMY H D  A QRVGPD+V+ RG G+VSE
Sbjct: 181 TSRRTMYVHLDLLAFQRVGPDQVDRRGRGKVSE 210

[Close]

BLAST of MELO3C033868 vs. NCBI nr
Match: KAA0054568.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 304.7 bits (779), Expect = 1.2e-78
Identity = 156/213 (73.24%), Postives = 169/213 (79.34%), Query Frame = 0


Query: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60
           MSTS R PR+VWTK+EEGTLVECLMELVS+GGWKS+NGTFRPGYL QLVRMMAEKLPGC+
Sbjct: 1   MSTSNRAPRYVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VCATT-------TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120
           V ATT       TLK+TFQAI EMR PACSGF  NDEEKCIIAEKELF NWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAITEMRDPACSGFEWNDEEKCIIAEKELFHNWVRSHPAAKG 120

Query: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGL 180
           LLNKPF YYDELTYVFGRDR T R    FA   ++ +A M  L   METRT RPCTA  L
Sbjct: 121 LLNKPFSYYDELTYVFGRDRATGR----FAWGLTSLVADMTDLIWGMETRTSRPCTAREL 180

Query: 181 TCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSE 207
           T RRTMY H D  ALQRVGP++V+ R  G+VSE
Sbjct: 181 TSRRTMYVHPDLLALQRVGPNQVDRRRRGKVSE 209

[Close]

BLAST of MELO3C033868 vs. ExPASy TrEMBL
Match: A0A5D3C195 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00840 PE=4 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 5.1e-168
Identity = 296/303 (97.69%), Postives = 296/303 (97.69%), Query Frame = 0


Query: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60
           MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR
Sbjct: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60

Query: 61  VCATT-------TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120
           VCATT       TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG
Sbjct: 61  VCATTVIDCRIKTLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGL 180
           LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGL
Sbjct: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGL 180

Query: 181 TCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSERRPAAIPTSILTRPTALRSTDDAAVVV 240
           TCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSERRPAAIPTSILTRPTALRSTDDAAVVV
Sbjct: 181 TCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSERRPAAIPTSILTRPTALRSTDDAAVVV 240

Query: 241 SVQSPLSPKNSGGVGLVARALTVRNRNSRSTKWSGLKAAEEKFSFKRTWILWFGKSCFTL 297
           SVQSPLSPKNSGGVGLVARALTVRNRNSRSTKWSGLKAAEEKFSFKRTWILWFGKSCFTL
Sbjct: 241 SVQSPLSPKNSGGVGLVARALTVRNRNSRSTKWSGLKAAEEKFSFKRTWILWFGKSCFTL 300

[Close]

BLAST of MELO3C033868 vs. ExPASy TrEMBL
Match: A0A5A7UNC0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00650 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.3e-86
Identity = 165/214 (77.10%), Postives = 177/214 (82.71%), Query Frame = 0


Query: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60
           MSTS R PRHVWT++EEGTLVECLMEL+S+GGWKS+NGTFR GYL QLVRMMAEKLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELMSMGGWKSDNGTFRSGYLAQLVRMMAEKLPGCQ 60

Query: 61  VCATT-------TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120
           V ATT       TLK+TFQAI EMRGPACSGFG NDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTS-LAGMRSLTCRMETRTFRPCTASG 180
           LLNKPF YYDELTYVFGRDR T RF ETFA+VAS   +A M  L   METRT RPCTA  
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFANVASNEPVADMTDLIWGMETRTSRPCTARE 180

Query: 181 LTCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSE 207
           LT RRTMY H D  ALQRVGPD+V+ RG GEVSE
Sbjct: 181 LTSRRTMYVHPDLRALQRVGPDQVDRRGRGEVSE 214

[Close]

BLAST of MELO3C033868 vs. ExPASy TrEMBL
Match: A0A5A7TXW8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001010 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 1.9e-85
Identity = 163/214 (76.17%), Postives = 172/214 (80.37%), Query Frame = 0


Query: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60
           MSTS R PRHVWT++EEGTLVECLMELVS+GGWKS+NGTFRPGYL QLVRMMAEKLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VCATT-------TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120
           V ATT       TLK+ FQAI EMRGPACSGFG NDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRPFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSL-AGMRSLTCRMETRTFRPCTASG 180
           LLNKP  YYDELTYVFGRDR T RF ETFADV S     G       METRT RPCTA  
Sbjct: 121 LLNKPLPYYDELTYVFGRDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRTSRPCTARE 180

Query: 181 LTCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSE 207
           LT RRTMY H D  ALQRVGPD+V+ RG GEVSE
Sbjct: 181 LTSRRTMYVHLDLLALQRVGPDQVDRRGRGEVSE 214

[Close]

BLAST of MELO3C033868 vs. ExPASy TrEMBL
Match: A0A5A7U5A6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00140 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.4e-79
Identity = 154/213 (72.30%), Postives = 165/213 (77.46%), Query Frame = 0


Query: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60
           MSTS R PRHVWT++EEGTLVECLMELVS+GGWKS+NGTFRPGYL QLVRMMAEKLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VCATT-------TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120
           V ATT       TLK+TFQ I EMRGPACSGFG NDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGL 180
           LLNKPF YYDELTYVFGRDR TSRF ETFADV S    G      R +           L
Sbjct: 121 LLNKPFSYYDELTYVFGRDRATSRFAETFADVGSNEPGGGYD---RFDMGDGNEDFPPVL 180

Query: 181 TCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSE 207
           T RRTMY H D  A QRVGPD+V+ RG G+VSE
Sbjct: 181 TSRRTMYVHLDLLAFQRVGPDQVDRRGRGKVSE 210

[Close]

BLAST of MELO3C033868 vs. ExPASy TrEMBL
Match: A0A5A7UHW5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003600 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 5.8e-79
Identity = 156/213 (73.24%), Postives = 169/213 (79.34%), Query Frame = 0


Query: 1   MSTSTRIPRHVWTKKEEGTLVECLMELVSIGGWKSNNGTFRPGYLTQLVRMMAEKLPGCR 60
           MSTS R PR+VWTK+EEGTLVECLMELVS+GGWKS+NGTFRPGYL QLVRMMAEKLPGC+
Sbjct: 1   MSTSNRAPRYVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VCATT-------TLKQTFQAIVEMRGPACSGFGCNDEEKCIIAEKELFDNWVRSHPAAKG 120
           V ATT       TLK+TFQAI EMR PACSGF  NDEEKCIIAEKELF NWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAITEMRDPACSGFEWNDEEKCIIAEKELFHNWVRSHPAAKG 120

Query: 121 LLNKPFLYYDELTYVFGRDRMTSRFVETFADVASTSLAGMRSLTCRMETRTFRPCTASGL 180
           LLNKPF YYDELTYVFGRDR T R    FA   ++ +A M  L   METRT RPCTA  L
Sbjct: 121 LLNKPFSYYDELTYVFGRDRATGR----FAWGLTSLVADMTDLIWGMETRTSRPCTAREL 180

Query: 181 TCRRTMYAHHDFFALQRVGPDRVNPRGGGEVSE 207
           T RRTMY H D  ALQRVGP++V+ R  G+VSE
Sbjct: 181 TSRRTMYVHPDLLALQRVGPNQVDRRRRGKVSE 209

The following BLAST results are available for this feature:

BLAST of MELO3C033868 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047431.1	1.1e-167	97.69	retrotransposon protein [Cucumis melo var. makuwa] >TYK04139.1 retrotransposon p...	[more]
KAA0056560.1	2.7e-86	77.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048382.1	3.8e-85	76.17	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050400.1	7.0e-79	72.30	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054568.1	1.2e-78	73.24	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033868 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033868 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C195	5.1e-168	97.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UNC0	1.3e-86	77.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXW8	1.9e-85	76.17	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U5A6	3.4e-79	72.30	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UHW5	5.8e-79	73.24	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C033868 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 2..147
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033868.1	MELO3C033868.1	mRNA