MELO3C033789 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033789
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	V-type proton ATPase subunit a
Location	chr09: 6526035 .. 6528236 (+)
RNA-Seq Expression	MELO3C033789
Synteny	MELO3C033789

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCTCAATTATCAAGCAAGAGGAAGGTGACGATTCTGGATTTTAAAGGGAAGACCCTGGTTTCGATTATGGAGTTTTATAGAAATTAGGATGAGAAAGACCTAGTTCTCCATGGATAAAGGAGATTTTGATCCAAATTTTATTTTGCTTGTGTTTATAGATTTTTGTGTGTTAATATATTTTACTTACAGAGACTGCAAATTAGGCAAAACTCCTGTCAATTTTTTATGGTGGTTCATGTCTTGACTGTTCTCTCTTTTATTGCATTATAGGTCAAAGTTGGTGAGCTTGAGACAGAACTAGTTGAGATAAATGCAAATAATGCGAAGTTACAGTGTTCCTACAATGAACTTGTGGAGTATAAGCTTATTCTGCAGAAGGTAACCCTTTGTCGTAATGTAGTTCTTATGGATGATCGATGCTACTTTAGCAGTTCAGAATTTGAAAAAAAATCAATATGATGAAAAGAGGTTACCTATGATCACCTTTGGGTACTCAATTTGCTCATCCATGGTTTTGCTGCAAGAGGTAAGTTTAATACCAAAAATCCCTTCGAATTTGGACCAATCTATCTATTAGCATTTTGGGCCTCTAAATCCACTGATATTAATACCAAAAAAATCCATAAATACCAGTGCATTTGAATCTCTTAGTTTTGGAAATTTTCTCCACCAGTTTTGTTCCGCCTTCACATGGTGTTTACCGTGCTTCTACTTTTGGACTTGAATCTCTTAATTTTGGGAATTTTTGTTTTCAGGTAGTAAGTAAGCAAACATGGTGTATGTAGTAATGAAGTCTATAAAGCCTGGTTTGGAGGACGCACAAGAGCAAATCCACGAGATTAGGATCACTCTTTCCTCCAAAAATGTGAAGAACCTTGAAAAAGGTATCTCCTTATACCTTTATTTTGAAGCAAATTTGATTTTTCTTTTATCTAGTGTTGCATTCGAACTCATATGTTGTTTGTCTCTTGGTTTTGCCTTTTTGTAAATTGTTTCTGAAATGTATTGATACTTCCTCATTTGCTTTGTGATTGCTGTAGTTGTTTTTAATTTGTTAGTTTTTATTCACTTTTCATGTTCTTCTCAATTTTTAATGTGTTTGTTATTGCTTTGTTATTTATTTGTCAAATGAACTTTTGATGGTTGCTCTAAGAGAGTCATCCATGATTCACAAATGCAGTCAATTCTATTAGGGGGACTTGACTTTACTCAACAACAATGGTTTTGTGTGTTGTAAGTTGATACCTTTAATGAGGGGTTGAAAATTTTTCTTGCTATTTTAAACCTGAAACTTTATGCAAAAACAAATGTTGAAGATGAAAGTGTATCTGGGGATTCACATTCGTCTCAAATCAGATTCATTCTTTTTCAGTTTGTAGCCATTAGAAACTTTTGGTTTTTTTTTAATATTTTTGGGTACTGTTATTCATGTTGCTGCAAGGGGTTTGAATTTAGTTCTCTTGGTTACTAAGTGGAATAGAAGAGAGGTTATTATGAAAGAAAAAAGGTTTCATCGATGCTTGTGATGCTATCATGCCATTAGGTGCACAGAAGGTCTACGACAGCCCTCCTTACAAAACCACATTTTTCCTGCCAGTTGCTTTTCATTTTTTTATGTCCATCTTCATATGATACCCCATGTTAATATAGTCATTTTTTAAATAGGGGTCCATTACTACTTATATCTTTAATTGGCGCCGGAGAAGTCATTCTTTCTGTGTCCGACGGAATATATTCTTTGTCCTGCTCTTTTGAGTAGAGATACTTGATTTCAATAATCAGTGATTTTCTAAATTTTAAAGTAGTTTCTGTTTTAATATTGTGTTCTCTTTTATGGTATTGATTTGGTTGTACATTTGGTTGAATGCCAAAATCAAGAAAATCACAAGCACCAAATAATATGTAGGAAATTGATGGTTCAAGTTCAACCTTCAGTCAACTTCTTGGAATTGAAGGTATTACACAAAAAAATTTATCTTACCATGTTTCTCAATTTCTCAATTTGAAAATTTTCAGGCTAAACACCATTATGCGAAGCTAAGGGATCGTGTGGATAGTCAAGCAATCGAGTAGAAAGCTAAATAATCTTTGAAGATTTAAGACTTTGAAGATTCATGAGTGAATGAGAAAATAAGTTTCTGCAGGTGTCCTTGGTGGGAAATTATTTATATTTTCTTGTGTTACTGATATTTTCCTTAAA

mRNA sequence

TGGCTCAATTATCAAGCAAGAGGAAGGTGACGATTCTGGATTTTAAAGGGAAGACCCTGAGACTGCAAATTAGGCAAAACTCCTGTCAATTTTTTATGGTCAAAGTTGGTGAGCTTGAGACAGAACTAGTTGAGATAAATGCAAATAATGCGAAGTTACAGTGTTCCTACAATGAACTTGTGGAGTATAAGCTTATTCTGCAGAAGTTCTTATGGATGATCGATGCTACTTTAGCAGTTCAGAATTTGAAAAAAAATCAATATGATGAAAAGAGGTTACCTATGATCACCTTTGGGTACTCAATTTGCTCATCCATGGTTTTGCTGCAAGAGGTAGTAAGTAAGCAAACATGGTGTATGTAGTAATGAAGTCTATAAAGCCTGGTTTGGAGGACGCACAAGAGCAAATCCACGAGATTAGGATCACTCTTTCCTCCAAAAATGTGAAGAACCTTGAAAAAGGCTAAACACCATTATGCGAAGCTAAGGGATCGTGTGGATAGTCAAGCAATCGAGTAGAAAGCTAAATAATCTTTGAAGATTTAAGACTTTGAAGATTCATGAGTGAATGAGAAAATAAGTTTCTGCAGGTGTCCTTGGTGGGAAATTATTTATATTTTCTTGTGTTACTGATATTTTCCTTAAA

Coding sequence (CDS)

GCTCAATTATCAAGCAAGAGGAAGGTGACGATTCTGGATTTTAAAGGGAAGACCCTGAGACTGCAAATTAGGCAAAACTCCTGTCAATTTTTTATGGTCAAAGTTGGTGAGCTTGAGACAGAACTAGTTGAGATAAATGCAAATAATGCGAAGTTACAGTGTTCCTACAATGAACTTGTGGAGTATAAGCTTATTCTGCAGAAGTTCTTATGGATGATCGATGCTACTTTAGCAGTTCAGAATTTGAAAAAAAATCAATATGATGAAAAGAGGTTACCTATGATCACCTTTGGGTACTCAATTTGCTCATCCATGGTTTTGCTGCAAGAGGTAGTAAGTAAGCAAACATGGTGTATGTAG

Protein sequence

AQLSSKRKVTILDFKGKTLRLQIRQNSCQFFMVKVGELETELVEINANNAKLQCSYNELVEYKLILQKFLWMIDATLAVQNLKKNQYDEKRLPMITFGYSICSSMVLLQEVVSKQTWCM

Homology

[Close]

BLAST of MELO3C033789 vs. NCBI nr
Match: TYK00078.1 (RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 4.7e-15
Identity = 52/66 (78.79%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 3  LSSKRKVTILDFKGKTLRLQIRQNSCQFFMVKVGELETELVEINANNAKLQCSYNELVEY 62
          LSSKRKVTI DFKGKTL             VKVGELETELVEINANNAKLQCSYNELVEY
Sbjct: 16 LSSKRKVTIQDFKGKTL-------------VKVGELETELVEINANNAKLQCSYNELVEY 68

Query: 63 KLILQK 69
          KLILQK
Sbjct: 76 KLILQK 68

[Close]

BLAST of MELO3C033789 vs. NCBI nr
Match: KAA0046625.1 (RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-14
Identity = 51/66 (77.27%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 3  LSSKRKVTILDFKGKTLRLQIRQNSCQFFMVKVGELETELVEINANNAKLQCSYNELVEY 62
          LSSKRKVTI +FKGKTL             VKVGELETELVEINANNAKLQCSYNELVEY
Sbjct: 16 LSSKRKVTIQNFKGKTL-------------VKVGELETELVEINANNAKLQCSYNELVEY 68

Query: 63 KLILQK 69
          KLILQK
Sbjct: 76 KLILQK 68

[Close]

BLAST of MELO3C033789 vs. NCBI nr
Match: TYK11168.1 (RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 46/64 (71.88%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 3   LSSKRKVTILDFKGKTLRLQIRQNSCQFFMVKVGELETELVEINANNAKLQCSYNELVEY 62
           LSSKRKVTI DFKGKTL             VKVGELE ELVEINAN+  LQCSYNELVEY
Sbjct: 89  LSSKRKVTIQDFKGKTL-------------VKVGELEAELVEINANSENLQCSYNELVEY 139

Query: 63  KLIL 67
           KLIL
Sbjct: 149 KLIL 139

[Close]

BLAST of MELO3C033789 vs. NCBI nr
Match: TYK11796.1 (40S ribosomal protein S20-2-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-10
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 30 FFMVKVGELETELVEINANNAKLQCSYNELVEYKLILQK----FLWMID 75
          + +VKVGELETELVEINANNAKLQCSYNELVEYKLILQK     LW+++
Sbjct: 47 WLLVKVGELETELVEINANNAKLQCSYNELVEYKLILQKVTYDHLWVLN 95

[Close]

BLAST of MELO3C033789 vs. NCBI nr
Match: TYK05699.1 (40S ribosomal protein S20-2 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-09
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 31 FMVKVGELETELVEINANNAKLQCSYNELVEYKLILQK----FLWMID 75
          + VKVGELETELVEINANNAKL+CSYNELVEYKLILQK     LW+++
Sbjct: 9  YQVKVGELETELVEINANNAKLRCSYNELVEYKLILQKVTYDHLWVLN 56

[Close]

BLAST of MELO3C033789 vs. ExPASy Swiss-Prot
Match: Q8W4S4 (V-type proton ATPase subunit a3 OS=Arabidopsis thaliana OX=3702 GN=VHA-a3 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.0e-09
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 33  VKVGELETELVEINANNAKLQCSYNELVEYKLILQK 69
           VK+GELE ELVEINANN KLQ SYNEL+EYKL+LQK
Sbjct: 108 VKLGELEAELVEINANNDKLQRSYNELMEYKLVLQK 143

[Close]

BLAST of MELO3C033789 vs. ExPASy Swiss-Prot
Match: Q9SJT7 (V-type proton ATPase subunit a2 OS=Arabidopsis thaliana OX=3702 GN=VHA-a2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-08
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 33  VKVGELETELVEINANNAKLQCSYNELVEYKLILQK 69
           VK+ ELE ELVEINANN KLQ SYNELVEYKL+L+K
Sbjct: 109 VKLEELEAELVEINANNDKLQRSYNELVEYKLVLEK 144

[Close]

BLAST of MELO3C033789 vs. ExPASy TrEMBL
Match: A0A5D3BLT0 (RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00290 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 52/66 (78.79%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 3  LSSKRKVTILDFKGKTLRLQIRQNSCQFFMVKVGELETELVEINANNAKLQCSYNELVEY 62
          LSSKRKVTI DFKGKTL             VKVGELETELVEINANNAKLQCSYNELVEY
Sbjct: 16 LSSKRKVTIQDFKGKTL-------------VKVGELETELVEINANNAKLQCSYNELVEY 68

Query: 63 KLILQK 69
          KLILQK
Sbjct: 76 KLILQK 68

[Close]

BLAST of MELO3C033789 vs. ExPASy TrEMBL
Match: A0A5A7TZ23 (RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001770 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.7e-15
Identity = 51/66 (77.27%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 3  LSSKRKVTILDFKGKTLRLQIRQNSCQFFMVKVGELETELVEINANNAKLQCSYNELVEY 62
          LSSKRKVTI +FKGKTL             VKVGELETELVEINANNAKLQCSYNELVEY
Sbjct: 16 LSSKRKVTIQNFKGKTL-------------VKVGELETELVEINANNAKLQCSYNELVEY 68

Query: 63 KLILQK 69
          KLILQK
Sbjct: 76 KLILQK 68

[Close]

BLAST of MELO3C033789 vs. ExPASy TrEMBL
Match: A0A5D3CJ01 (RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00820 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.3e-12
Identity = 46/64 (71.88%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 3   LSSKRKVTILDFKGKTLRLQIRQNSCQFFMVKVGELETELVEINANNAKLQCSYNELVEY 62
           LSSKRKVTI DFKGKTL             VKVGELE ELVEINAN+  LQCSYNELVEY
Sbjct: 89  LSSKRKVTIQDFKGKTL-------------VKVGELEAELVEINANSENLQCSYNELVEY 139

Query: 63  KLIL 67
           KLIL
Sbjct: 149 KLIL 139

[Close]

BLAST of MELO3C033789 vs. ExPASy TrEMBL
Match: A0A5D3CMZ2 (40S ribosomal protein S20-2-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00060 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 30 FFMVKVGELETELVEINANNAKLQCSYNELVEYKLILQK----FLWMID 75
          + +VKVGELETELVEINANNAKLQCSYNELVEYKLILQK     LW+++
Sbjct: 47 WLLVKVGELETELVEINANNAKLQCSYNELVEYKLILQKVTYDHLWVLN 95

[Close]

BLAST of MELO3C033789 vs. ExPASy TrEMBL
Match: A0A5D3C5L8 (40S ribosomal protein S20-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001800 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.4e-10
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 31 FMVKVGELETELVEINANNAKLQCSYNELVEYKLILQK----FLWMID 75
          + VKVGELETELVEINANNAKL+CSYNELVEYKLILQK     LW+++
Sbjct: 9  YQVKVGELETELVEINANNAKLRCSYNELVEYKLILQKVTYDHLWVLN 56

[Close]

BLAST of MELO3C033789 vs. TAIR 10
Match: AT4G39080.1 (vacuolar proton ATPase A3 )

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-10
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 33  VKVGELETELVEINANNAKLQCSYNELVEYKLILQK 69
           VK+GELE ELVEINANN KLQ SYNEL+EYKL+LQK
Sbjct: 108 VKLGELEAELVEINANNDKLQRSYNELMEYKLVLQK 143

[Close]

BLAST of MELO3C033789 vs. TAIR 10
Match: AT2G21410.1 (vacuolar proton ATPase A2 )

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-09
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 33  VKVGELETELVEINANNAKLQCSYNELVEYKLILQK 69
           VK+ ELE ELVEINANN KLQ SYNELVEYKL+L+K
Sbjct: 109 VKLEELEAELVEINANNDKLQRSYNELVEYKLVLEK 144

The following BLAST results are available for this feature:

BLAST of MELO3C033789 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00078.1	4.7e-15	78.79	RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa]	[more]
KAA0046625.1	1.8e-14	77.27	RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa]	[more]
TYK11168.1	1.1e-11	71.88	RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa]	[more]
TYK11796.1	6.0e-10	77.55	40S ribosomal protein S20-2-like isoform X2 [Cucumis melo var. makuwa]	[more]
TYK05699.1	1.7e-09	77.08	40S ribosomal protein S20-2 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033789 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4S4	9.0e-09	83.33	V-type proton ATPase subunit a3 OS=Arabidopsis thaliana OX=3702 GN=VHA-a3 PE=1 S...	[more]
Q9SJT7	7.6e-08	80.56	V-type proton ATPase subunit a2 OS=Arabidopsis thaliana OX=3702 GN=VHA-a2 PE=1 S...	[more]

BLAST of MELO3C033789 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BLT0	2.3e-15	78.79	RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa O...	[more]
A0A5A7TZ23	8.7e-15	77.27	RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa O...	[more]
A0A5D3CJ01	5.3e-12	71.88	RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa O...	[more]
A0A5D3CMZ2	2.9e-10	77.55	40S ribosomal protein S20-2-like isoform X2 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3C5L8	8.4e-10	77.08	40S ribosomal protein S20-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of MELO3C033789 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39080.1	6.4e-10	83.33	vacuolar proton ATPase A3	[more]
AT2G21410.1	5.4e-09	80.56	vacuolar proton ATPase A2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033789.1	MELO3C033789.1	mRNA