MELO3C033747 (gene) Melon (DHL92) v4

Overview
NameMELO3C033747
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr01: 16954728 .. 16955209 (+)
RNA-Seq ExpressionMELO3C033747
SyntenyMELO3C033747
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATCCTAACTGCGTTCACGCTGGCCCAACGTCAGATCTTACTAACGTTGGAGCTACTAATGAACGACAATAGGTGTATCACATATACACCGTCCGATACACGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAGATTTTGTGTTGCCAAAGCACGCGAATGGACAGGCGAACATTTGCACTTCTATGTCATTTACTTCGGACTGTATTTGGTCTTTCGTCCACCGATATTGTCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCTTGCCCAAGACGTGAAGAACCGCGTAATTCAAAGGAAATTTGTACGGCTCGATGAGATAATATCGCGACATTTTAACCTTGTACTATTGGCTGTCGTCCGACTATACGAGGAGTTGATAAAGCGACCTGTTCCGGTGACAAAAAACTGCAATGATCAACGTTGGAAGTGTTTTGAGGTGGGCATGGTACAAGTTTAA

mRNA sequence

GCATCCTAACTGCGTTCACGCTGGCCCAACGTCAGATCTTACTAACGTTGGAGCTACTAATGAACGACAATAGGTGTATCACATATACACCGTCCGATACACGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAGATTTTGTGTTGCCAAAGCACGCGAATGGACAGGCGAACATTTGCACTTCTATGTCATTTACTTCGGACTGTATTTGGTCTTTCGTCCACCGATATTGTCGACGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCTTGCCCAAGACGTGAAGAACCGCGTAATTCAAAGGAAATTTGTACGGCTCGATGAGATAATATCGCGACATTTTAACCTTGTACTATTGGCTGTCGTCCGACTATACGAGGAGTTGATAAAGCGACCTGTTCCGGTGACAAAAAACTGCAATGATCAACGTTGGAAGTGTTTTGAGGTGGGCATGGTACAAGTTTAA

Coding sequence (CDS)

ATGAACGACAATAGGTGTATCACATATACACCGTCCGATACACGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAGATTTTGTGTTGCCAAAGCACGCGAATGGACAGGCGAACATTTGCACTTCTATGTCATTTACTTCGGACTGTATTTGGTCTTTCGTCCACCGATATTGTCGACGTTGA

Protein sequence

MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFVLPKHANGQANICTSMSFTSDCIWSFVHRYCRR
Homology
BLAST of MELO3C033747 vs. NCBI nr
Match: KAA0065503.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.2e-08
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1  MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFV 34
          MNDNR IT+TPSDTRHRIRQLAYFRMIHESDFV
Sbjct: 1  MNDNRRITHTPSDTRHRIRQLAYFRMIHESDFV 33

BLAST of MELO3C033747 vs. NCBI nr
Match: TYK08743.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.2e-08
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1  MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFV 34
          MNDNR IT+TPSDTRHRIRQLAYFRMIHESDFV
Sbjct: 1  MNDNRRITHTPSDTRHRIRQLAYFRMIHESDFV 33

BLAST of MELO3C033747 vs. NCBI nr
Match: KAA0036563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 1  MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFV 34
          MNDN+ ITYTPSDTRHRIRQLAYFRMIHESD V
Sbjct: 28 MNDNKRITYTPSDTRHRIRQLAYFRMIHESDLV 60

BLAST of MELO3C033747 vs. NCBI nr
Match: KAA0033801.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22333.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 1  MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFV 34
          MNDNR IT+TP DTRHRIRQLAYFRMIHESD V
Sbjct: 1  MNDNRRITHTPFDTRHRIRQLAYFRMIHESDLV 33

BLAST of MELO3C033747 vs. NCBI nr
Match: KAA0058532.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 1  MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFV 34
          MN+N+C+ YTPSDTRHRIR+LAYF MIHESD V
Sbjct: 9  MNNNKCLPYTPSDTRHRIRELAYFHMIHESDLV 41

BLAST of MELO3C033747 vs. ExPASy TrEMBL
Match: A0A5D3CA71 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00540 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1  MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFV 34
          MNDNR IT+TPSDTRHRIRQLAYFRMIHESDFV
Sbjct: 1  MNDNRRITHTPSDTRHRIRQLAYFRMIHESDFV 33

BLAST of MELO3C033747 vs. ExPASy TrEMBL
Match: A0A5A7VBE6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G002110 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1  MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFV 34
          MNDNR IT+TPSDTRHRIRQLAYFRMIHESDFV
Sbjct: 1  MNDNRRITHTPSDTRHRIRQLAYFRMIHESDFV 33

BLAST of MELO3C033747 vs. ExPASy TrEMBL
Match: A0A5A7T0Z8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00710 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.3e-08
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 1  MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFV 34
          MNDN+ ITYTPSDTRHRIRQLAYFRMIHESD V
Sbjct: 28 MNDNKRITYTPSDTRHRIRQLAYFRMIHESDLV 60

BLAST of MELO3C033747 vs. ExPASy TrEMBL
Match: A0A5D3DFK7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00500 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-07
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 1  MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFV 34
          MNDNR IT+TP DTRHRIRQLAYFRMIHESD V
Sbjct: 1  MNDNRRITHTPFDTRHRIRQLAYFRMIHESDLV 33

BLAST of MELO3C033747 vs. ExPASy TrEMBL
Match: A0A5A7URP2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G001330 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.1e-07
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 1  MNDNRCITYTPSDTRHRIRQLAYFRMIHESDFV 34
          MN+N+C+ YTPSDTRHRIR+LAYF MIHESD V
Sbjct: 9  MNNNKCLPYTPSDTRHRIRELAYFHMIHESDLV 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065503.15.2e-0893.94retrotransposon protein [Cucumis melo var. makuwa][more]
TYK08743.15.2e-0893.94retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036563.11.5e-0790.91retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0033801.11.3e-0687.88retrotransposon protein [Cucumis melo var. makuwa] >TYK22333.1 retrotransposon p... [more]
KAA0058532.11.7e-0678.79retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CA712.5e-0893.94Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VBE62.5e-0893.94Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T0Z87.3e-0890.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DFK76.2e-0787.88Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7URP28.1e-0778.79Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033747.1MELO3C033747.1mRNA