MELO3C033734.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033734.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	CACTA en-spm transposon protein
Location	chr09: 5660624 .. 5661923 (+)
RNA-Seq Expression	MELO3C033734.jh1
Synteny	MELO3C033734.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATCGCCCCTGGTGCGGAGAAACCTATTTCTCCACAGGTGATAGGCGTGTGTGTGTGAAAGAAATTTCTCGTCCGCTGCCTTAAGTAAGCGGACGTAGGTAGATAATACATCGAGGTCATCAAAGGCGACCTCTAGGTAAGTCCACTATAAATTCATTATTCCATTTAAAACATATTTAAGTTAACCAAGCAAAAGTGTTGTTTTTGTAATGTGTAGCAATTTTTTGTGATTGATTTCAATGATCAAGCAATGAATAGGTTCATTGAGCATCAGATGCTCAGCACCTTTAAAGAGTTTTGAGACGACTATCACAGGCACATCAAAAAGTATAGCGGTCCCAAGGAGGCTCGTGCCAACCCACCACACTTATTGGTGAGATGTGATGAGGATTGGCACGTCCTCTGTGACCACTACATGAATCGTGCATTCCAGGTGAGCAACTGAACCCTTTGTCATGGTTAATTATGATTTCAACTTTTAATATATATAAGAAATAAACAATATAATTTTTTTCATGCAGCAGCATTCACGAACGAACAAGGCTGCTAGACAGCCTTCCAATCATAGCAGCAGATCAAAGTCGTTTCTACAACGACAGCACGAGCTCGCTGAGCAAAGAGAGGAGTCGATCGACCGTGTGGAGTTATTCCGAAAAACACACGTTCGAGACGGGACGTTCGTCTCCCATGCTGCAGAGGATGTGCATATAAGTTATCCAACCAACACTTCTATTTTTATTTGTCCTATTTAACATATAATGTATTTTTTACTTACTAAGATAGTTTCTAAATTTGTTACAACATCAAATTCTAGAACTCCAGTCCCGACCTATCCTAGGGGGTAGTCAGCCACTCTCTGGGGATGAGATATGCGAGACACTGTTGGGTAGATGATCGGGCTACTCAAAAGGCCTTGGTTGGGGACCTAAGCCAAAGACCCGCAAAACGAAGAGTGCAAGCAGTTCTACGATGTCATGTTCACAATCCACAGTAGAGCTTCAATTACAAGCTAAGCTTGATCAAGGTATGAAGCGGATTGAAGAGCAGACAAGAAATCATGAAGCATTAATTTCATAAGTGAAACGAATACGAAAGCTGATCAAAGAGATGACTAGGGCACAGGAAGGACCACCACATGATCCCTAGCTTTGCGATACGTATATATGTTTCCATTATTCTTAAGTTTCTGAAATGACAGTATACAATATGATGATATGCATATATATGTACTAAACTTAGTCACTCTTGTATTATTGTAGAACCCACGGTGTAGAATGGCGTACGAGGCTCATTAG

mRNA sequence

ATGACGATCGCCCCTGGTGCGGAGAAACCTATTTCTCCACAGCAATTTTTTGTGATTGATTTCAATGATCAAGCAATGAATAGGTTCATTGAGCATCAGATGCTCAGCACCTTTAAAGAGTTTTGAGACGACTATCACAGGCACATCAAAAAGTATAGCGGTCCCAAGGAGGCTCGTGCCAACCCACCACACTTATTGGTGAGATGTGATGAGGATTGGCACGTCCTCTGTGACCACTACATGAATCGTGCATTCCAGCAGCATTCACGAACGAACAAGGCTGCTAGACAGCCTTCCAATCATAGCAGCAGATCAAAGTCGTTTCTACAACGACAGCACGAGCTCGCTGAGCAAAGAGAGGAGTCGATCGACCGTGTGGAGTTATTCCGAAAAACACACGTTCGAGACGGGACGTTCGTCTCCCATGCTGCAGAGGATAACCCACGGTGTAGAATGGCGTACGAGGCTCATTAG

Coding sequence (CDS)

ATGAATCGTGCATTCCAGCAGCATTCACGAACGAACAAGGCTGCTAGACAGCCTTCCAATCATAGCAGCAGATCAAAGTCGTTTCTACAACGACAGCACGAGCTCGCTGAGCAAAGAGAGGAGTCGATCGACCGTGTGGAGTTATTCCGAAAAACACACGTTCGAGACGGGACGTTCGTCTCCCATGCTGCAGAGGATAACCCACGGTGTAGAATGGCGTACGAGGCTCATTAG

Protein sequence

MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFVSHAAEDNPRCRMAYEAH

Homology

[Close]

BLAST of MELO3C033734.jh1 vs. NCBI nr
Match: TYK05828.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 5.34e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV 60
           MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV
Sbjct: 87  MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV 146

Query: 61  SHAAED 66
           SHAAED
Sbjct: 147 SHAAED 152

[Close]

BLAST of MELO3C033734.jh1 vs. NCBI nr
Match: KAA0066015.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 5.34e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV 60
           MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV
Sbjct: 87  MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV 146

Query: 61  SHAAED 66
           SHAAED
Sbjct: 147 SHAAED 152

[Close]

BLAST of MELO3C033734.jh1 vs. NCBI nr
Match: KAA0046351.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 4.06e-19
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MNRAFQQHSRTNKAARQ--PSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGT 60
           ++RAFQ+ SRTNKAARQ  P NHSSRSKSFLQRQ+ELAE+R + +DRVELFR+THVR GT
Sbjct: 171 ISRAFQEQSRTNKAARQKQPHNHSSRSKSFLQRQYELAERRGQPVDRVELFRETHVRAGT 230

Query: 61  FVSHAAED 66
           FVS AAED
Sbjct: 231 FVSQAAED 238

[Close]

BLAST of MELO3C033734.jh1 vs. NCBI nr
Match: KAA0066000.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK28948.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 7.59e-19
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MNRAFQQHSRTNKAARQ--PSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGT 60
           ++RAFQ+ SRTNKAARQ  P NHSS SKSFLQRQHELAE+R +S+DRVELFR+TH+R GT
Sbjct: 460 ISRAFQEQSRTNKAARQKQPYNHSSGSKSFLQRQHELAERRGKSVDRVELFRETHIRAGT 519

Query: 61  FVSHAAED 66
           FVS AAED
Sbjct: 520 FVSQAAED 527

[Close]

BLAST of MELO3C033734.jh1 vs. NCBI nr
Match: TYJ99472.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK07110.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 9.45e-19
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MNRAFQQHSRTNKAARQ--PSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGT 60
           ++RAFQ+ SRTNKAARQ  P NHSS SKSFLQRQHELAE+R + +DRVELFR+THVR GT
Sbjct: 182 ISRAFQEQSRTNKAARQKQPYNHSSGSKSFLQRQHELAERRGQPVDRVELFRETHVRAGT 241

Query: 61  FVSHAAED 66
           FVS AAED
Sbjct: 242 FVSQAAED 249

[Close]

BLAST of MELO3C033734.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VJV8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32G00050 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 2.58e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV 60
           MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV
Sbjct: 87  MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV 146

Query: 61  SHAAED 66
           SHAAED
Sbjct: 147 SHAAED 152

[Close]

BLAST of MELO3C033734.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C3P3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003380 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 2.58e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV 60
           MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV
Sbjct: 87  MNRAFQQHSRTNKAARQPSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGTFV 146

Query: 61  SHAAED 66
           SHAAED
Sbjct: 147 SHAAED 152

[Close]

BLAST of MELO3C033734.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TYC7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00610 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.97e-19
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MNRAFQQHSRTNKAARQ--PSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGT 60
           ++RAFQ+ SRTNKAARQ  P NHSSRSKSFLQRQ+ELAE+R + +DRVELFR+THVR GT
Sbjct: 171 ISRAFQEQSRTNKAARQKQPHNHSSRSKSFLQRQYELAERRGQPVDRVELFRETHVRAGT 230

Query: 61  FVSHAAED 66
           FVS AAED
Sbjct: 231 FVSQAAED 238

[Close]

BLAST of MELO3C033734.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DZR1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00350 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.68e-19
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MNRAFQQHSRTNKAARQ--PSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGT 60
           ++RAFQ+ SRTNKAARQ  P NHSS SKSFLQRQHELAE+R +S+DRVELFR+TH+R GT
Sbjct: 460 ISRAFQEQSRTNKAARQKQPYNHSSGSKSFLQRQHELAERRGKSVDRVELFRETHIRAGT 519

Query: 61  FVSHAAED 66
           FVS AAED
Sbjct: 520 FVSQAAED 527

[Close]

BLAST of MELO3C033734.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C6Z8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00370 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.58e-19
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MNRAFQQHSRTNKAARQ--PSNHSSRSKSFLQRQHELAEQREESIDRVELFRKTHVRDGT 60
           ++RAFQ+ SRTNKAARQ  P NHSS SKSFLQRQHELAE+R + +DRVELFR+THVR GT
Sbjct: 182 ISRAFQEQSRTNKAARQKQPYNHSSGSKSFLQRQHELAERRGQPVDRVELFRETHVRAGT 241

Query: 61  FVSHAAED 66
           FVS AAED
Sbjct: 242 FVSQAAED 249

The following BLAST results are available for this feature:

BLAST of MELO3C033734.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05828.1	5.34e-33	100.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0066015.1	5.34e-33	100.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0046351.1	4.06e-19	76.47	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0066000.1	7.59e-19	76.47	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK28948.1 CACTA en-...	[more]
TYJ99472.1	9.45e-19	76.47	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK07110.1 CACTA en-...	[more]

BLAST of MELO3C033734.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033734.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJV8	2.58e-33	100.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3C3P3	2.58e-33	100.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TYC7	1.97e-19	76.47	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DZR1	3.68e-19	76.47	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3C6Z8	4.58e-19	76.47	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C033734.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 4..66 e-value: 3.4E-13 score: 49.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033734.jh1.t1	MELO3C033734.jh1.t1	mRNA