MELO3C033688 (gene) Melon (DHL92) v4

Overview
NameMELO3C033688
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionhomocysteine S-methyltransferase 1
Locationchr10: 1693936 .. 1694141 (-)
RNA-Seq ExpressionMELO3C033688
SyntenyMELO3C033688
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCACAATTCCTGGGTTTATATCAAAGGGGCTCTCCGTGGAAGAAGGGGAGTTGCTCTTAGAAAAGAGTGTTAAATTGGCCATTGAAGCTCGTGATAGTTTCTGGGATTCTGTGAAGTGTATCCCAGGGCATAATTACAATAGGGCTTTGGTTGCAGCATCCATTGGAAGCTATGGTGCCTATCTTGCTGATGGCTCAGAGTACAG

mRNA sequence

GCCACAATTCCTGGGTTTATATCAAAGGGGCTCTCCGTGGAAGAAGGGGAGTTGCTCTTAGAAAAGAGTGTTAAATTGGCCATTGAAGCTCGTGATAGTTTCTGGGATTCTGTGAAGTGTATCCCAGGGCATAATTACAATAGGGCTTTGGTTGCAGCATCCATTGGAAGCTATGGTGCCTATCTTGCTGATGGCTCAGAGTACAG

Coding sequence (CDS)

GCCACAATTCCTGGGTTTATATCAAAGGGGCTCTCCGTGGAAGAAGGGGAGTTGCTCTTAGAAAAGAGTGTTAAATTGGCCATTGAAGCTCGTGATAGTTTCTGGGATTCTGTGAAGTGTATCCCAGGGCATAATTACAATAGGGCTTTGGTTGCAGCATCCATTGGAAGCTATGGTGCCTATCTTGCTGATGGCTCAGAGTAC

Protein sequence

ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGAYLADGSEY
Homology
BLAST of MELO3C033688 vs. NCBI nr
Match: XP_008446599.1 (PREDICTED: homocysteine S-methyltransferase 1 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 8.6e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA
Sbjct: 77  ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. NCBI nr
Match: KAA0034555.1 (homocysteine S-methyltransferase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 8.6e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA
Sbjct: 77  ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. NCBI nr
Match: XP_004135092.1 (homocysteine S-methyltransferase 1 isoform X1 [Cucumis sativus] >KGN52080.1 hypothetical protein Csa_008676 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 4.3e-29
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGH YNRALVAASIGSYGA
Sbjct: 77  ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHKYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. NCBI nr
Match: XP_031741681.1 (homocysteine S-methyltransferase 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 4.3e-29
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGH YNRALVAASIGSYGA
Sbjct: 77  ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHKYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. NCBI nr
Match: XP_016901039.1 (PREDICTED: homocysteine S-methyltransferase 1-like [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 4.0e-27
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1  ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
          ATIPGFI KG   EEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA
Sbjct: 31 ATIPGFILKGFFGEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 90

Query: 61 YLADGSEY 69
          YLADGSEY
Sbjct: 91 YLADGSEY 98

BLAST of MELO3C033688 vs. ExPASy Swiss-Prot
Match: A4ZGQ8 (Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica OX=36774 GN=HMT1 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.7e-25
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGF+S+GLS+EE E LL+KSVKLA+EARD FWD V    GH+YNRALVAASIGSYGA
Sbjct: 77  ATIPGFLSRGLSMEESESLLQKSVKLAVEARDRFWDKVSKTSGHSYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. ExPASy Swiss-Prot
Match: Q9SDL7 (Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=HMT-1 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-24
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGF+S+GLS+EE E LL+KSV+LA+EARD FW+ V  + GH+YNRALVAASIGSYGA
Sbjct: 77  ATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. ExPASy Swiss-Prot
Match: Q9FUN0 (Homocysteine S-methyltransferase 1 OS=Zea mays OX=4577 GN=HMT-1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-18
Identity = 49/68 (72.06%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGFI++G+SV E E LL  SVKLA EARD FW S        YNRALVAASIGSYGA
Sbjct: 71  ATIPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTLRKSKPIYNRALVAASIGSYGA 130

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 131 YLADGSEY 138

BLAST of MELO3C033688 vs. ExPASy Swiss-Prot
Match: Q9M1W4 (Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=HMT-2 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-12
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYN-------RALVAA 60
           ATI GF +KG S EE E LL+KSV++A EAR+S++D  KC    + +         LVAA
Sbjct: 76  ATIQGFEAKGFSREESESLLKKSVEIATEARNSYYD--KCGTSSSMDDKILKKRPILVAA 135

Query: 61  SIGSYGAYLADGSEY 69
           S+GSYGAYLADGSEY
Sbjct: 136 SVGSYGAYLADGSEY 148

BLAST of MELO3C033688 vs. ExPASy Swiss-Prot
Match: Q4VNK0 (Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica OX=36774 GN=SMT PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.5e-12
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNR---ALVAASIGS 60
           ATI GF +KG S+E+ E LL KSV++A EAR +++D  K        +    LVAAS+GS
Sbjct: 81  ATIQGFEAKGYSIEKSESLLRKSVEIACEARSTYYDKCKDDDDKKILKKRPILVAASVGS 140

Query: 61  YGAYLADGSEY 69
           YGA+LADGSEY
Sbjct: 141 YGAFLADGSEY 151

BLAST of MELO3C033688 vs. ExPASy TrEMBL
Match: A0A5A7SZC2 (Homocysteine S-methyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005700 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.2e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA
Sbjct: 77  ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. ExPASy TrEMBL
Match: A0A1S3BEY1 (homocysteine S-methyltransferase 1 OS=Cucumis melo OX=3656 GN=LOC103489284 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.2e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA
Sbjct: 77  ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. ExPASy TrEMBL
Match: A0A0A0KR42 (Hcy-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609660 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-29
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGH YNRALVAASIGSYGA
Sbjct: 77  ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHKYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. ExPASy TrEMBL
Match: A0A1S4DYI3 (homocysteine S-methyltransferase 1-like OS=Cucumis melo OX=3656 GN=LOC107991154 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-27
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1  ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
          ATIPGFI KG   EEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA
Sbjct: 31 ATIPGFILKGFFGEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 90

Query: 61 YLADGSEY 69
          YLADGSEY
Sbjct: 91 YLADGSEY 98

BLAST of MELO3C033688 vs. ExPASy TrEMBL
Match: A0A6J1HZT4 (homocysteine S-methyltransferase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467714 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGF+SKGLS EEGELLLE+SVKLA+EARDSFWDSVK  PGHNYNRALVAASIGSYGA
Sbjct: 77  ATIPGFLSKGLSAEEGELLLERSVKLAVEARDSFWDSVKSNPGHNYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. TAIR 10
Match: AT3G25900.2 (Homocysteine S-methyltransferase family protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGF+S+GLS+EE E LL+KSV+LA+EARD FW+ V  + GH+YNRALVAASIGSYGA
Sbjct: 77  ATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. TAIR 10
Match: AT3G25900.1 (Homocysteine S-methyltransferase family protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGF+S+GLS+EE E LL+KSV+LA+EARD FW+ V  + GH+YNRALVAASIGSYGA
Sbjct: 77  ATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. TAIR 10
Match: AT3G25900.3 (Homocysteine S-methyltransferase family protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYNRALVAASIGSYGA 60
           ATIPGF+S+GLS+EE E LL+KSV+LA+EARD FW+ V  + GH+YNRALVAASIGSYGA
Sbjct: 77  ATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHSYNRALVAASIGSYGA 136

Query: 61  YLADGSEY 69
           YLADGSEY
Sbjct: 137 YLADGSEY 144

BLAST of MELO3C033688 vs. TAIR 10
Match: AT3G63250.2 (homocysteine methyltransferase 2 )

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-13
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYN-------RALVAA 60
           ATI GF +KG S EE E LL+KSV++A EAR+S++D  KC    + +         LVAA
Sbjct: 36  ATIQGFEAKGFSREESESLLKKSVEIATEARNSYYD--KCGTSSSMDDKILKKRPILVAA 95

Query: 61  SIGSYGAYLADGSEY 69
           S+GSYGAYLADGSEY
Sbjct: 96  SVGSYGAYLADGSEY 108

BLAST of MELO3C033688 vs. TAIR 10
Match: AT3G63250.1 (homocysteine methyltransferase 2 )

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-13
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 1   ATIPGFISKGLSVEEGELLLEKSVKLAIEARDSFWDSVKCIPGHNYN-------RALVAA 60
           ATI GF +KG S EE E LL+KSV++A EAR+S++D  KC    + +         LVAA
Sbjct: 76  ATIQGFEAKGFSREESESLLKKSVEIATEARNSYYD--KCGTSSSMDDKILKKRPILVAA 135

Query: 61  SIGSYGAYLADGSEY 69
           S+GSYGAYLADGSEY
Sbjct: 136 SVGSYGAYLADGSEY 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008446599.18.6e-30100.00PREDICTED: homocysteine S-methyltransferase 1 [Cucumis melo][more]
KAA0034555.18.6e-30100.00homocysteine S-methyltransferase 1 [Cucumis melo var. makuwa][more]
XP_004135092.14.3e-2998.53homocysteine S-methyltransferase 1 isoform X1 [Cucumis sativus] >KGN52080.1 hypo... [more]
XP_031741681.14.3e-2998.53homocysteine S-methyltransferase 1 isoform X2 [Cucumis sativus][more]
XP_016901039.14.0e-2794.12PREDICTED: homocysteine S-methyltransferase 1-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
A4ZGQ88.7e-2579.41Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica OX=36774 GN... [more]
Q9SDL71.5e-2476.47Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=HMT-1 PE=1... [more]
Q9FUN01.6e-1872.06Homocysteine S-methyltransferase 1 OS=Zea mays OX=4577 GN=HMT-1 PE=2 SV=1[more]
Q9M1W41.7e-1256.00Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=HMT-2 PE=1... [more]
Q4VNK06.5e-1253.52Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica OX=36774 G... [more]
Match NameE-valueIdentityDescription
A0A5A7SZC24.2e-30100.00Homocysteine S-methyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A1S3BEY14.2e-30100.00homocysteine S-methyltransferase 1 OS=Cucumis melo OX=3656 GN=LOC103489284 PE=4 ... [more]
A0A0A0KR422.1e-2998.53Hcy-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609660... [more]
A0A1S4DYI31.9e-2794.12homocysteine S-methyltransferase 1-like OS=Cucumis melo OX=3656 GN=LOC107991154 ... [more]
A0A6J1HZT45.6e-2791.18homocysteine S-methyltransferase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467... [more]
Match NameE-valueIdentityDescription
AT3G25900.21.1e-2576.47Homocysteine S-methyltransferase family protein [more]
AT3G25900.11.1e-2576.47Homocysteine S-methyltransferase family protein [more]
AT3G25900.31.1e-2576.47Homocysteine S-methyltransferase family protein [more]
AT3G63250.21.2e-1356.00homocysteine methyltransferase 2 [more]
AT3G63250.11.2e-1356.00homocysteine methyltransferase 2 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036589Homocysteine-binding domain superfamilyGENE3D3.20.20.330coord: 1..68
e-value: 2.3E-10
score: 42.3
IPR036589Homocysteine-binding domain superfamilySUPERFAMILY82282Homocysteine S-methyltransferasecoord: 1..68
IPR003726Homocysteine-binding domainPFAMPF02574S-methyl_transcoord: 13..65
e-value: 4.7E-5
score: 23.4
NoneNo IPR availablePANTHERPTHR46015:SF7HOMOCYSTEINE S-METHYLTRANSFERASE 1coord: 1..68
NoneNo IPR availablePANTHERPTHR46015ZGC:172121coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033688.1MELO3C033688.1mRNA