MELO3C033684 (gene) Melon (DHL92) v4

Overview
NameMELO3C033684
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Locationchr09: 4058147 .. 4063758 (+)
RNA-Seq ExpressionMELO3C033684
SyntenyMELO3C033684
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCGTCCCGCTCTGTAGTTAGTATAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGGGGGCATCCTATGTAAATGGTTTGCATAAGACTGGAACCACGATATAGTCACTTTTAGTTATAACACCGTAAACTATAAACTGACTATTTCAATTATGATGGCCTAGGTAACTTGATCTTAATCCTGAGCTAACTATGAACTTCTGTTTATTCGGTAGTATCCTTAGATTTGCATAGGTGAGGGCAGCTCATCATCGCTGGCCCAATAAGCCTTCCATTTCAGGGGTAAGACCGAGTGGATAGCTAGGGACATAGGGTGCAAGACGGAATTCACTCCTACCCACTTCTGGGATAGTAGATAGGTTATTCCCTTAAGGACTGAATCCAAGTCTTGAACAAGAGGCTCCATCTTCTCATTGGCCCGAGAAGGATTCGGGTTTATAGGTTGGACCTTAAACCAATTGTTCAATAGTAGATTAGTGGGTCTTAAGGAGCAAGATGTAATCTCGGGGGTAAAACGATATTTTGATCCAGCCAAGATTATGAACAATCTGTGAAGGATCGAATTACTCATCATGGTTATATCAGGTGGACATAAATATATCTATAGCGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTAGTTAACGAATGTTGATTAAACTTGGTCTAAAAGAGTTTAGCCAGTTAATCTCGAATCATTGGAGCCATGATCTATAGGTCCATTAGGTTCCCCTACTAGCTTATATAGATTCAACTAAGAACAAGAATGTTGAAGTAACTCAAATTATTCGAATTAAGAAAAGAGAGAGAAATCGACAAATATATAAGATATAAGTCGGTAGATATAAACTTTAAGCTTTGTGTTTAAATATGATTTAAATAAATATGAATATAGATTCATATTTAGAAGCTTGGAAAGTTTTGAAACGGTCAATGTTGTAAAAGTCAACTTGTTGACTTTTAACTTTGAGAAACAAAACTTTGACCGGATTTATATTCAAATATGATTTTAATTTTAGAAAAATGAATGCAGATTCATACCCGGAAGGTTAAAATTAGTCAAGACGGGTAAAATAACAAAAAGTCAAAAAGTTAACTTTTGACTAAGAAAAGTCAAGGTTTGACTTTGACTTAATTGGTTAAATGACCAAAATGCCCATTTGACTAATTACTTAATTAACTAAAAGTTAGTGGACAATGTGGCAGCCTATTGTGAATTAGAAGCCACTAATTTCACTAAAGATTTAATGGATTAATTAGGTGTTGAGATTATATGAAATAATTTGCATGTAAATTTCATATATAAACTTCTCATTACAGAATGAGATGAAGATGATGTTTTTCTCATAAAATTACCTAAACAATACACTACCTCCTTCCTTCTCTTAAAGATTTACTTCACAAAAACGAGTCCCTTAATTCTGTTCTTGGTCGTGAGATTAGTAGGTCAACATAGTGGTTGTCCTTGCTCGTGATTTTTAGGCAAAAAAGAAGCTTTGAATCGAAGAAGAAGTTTAGAACTATAAAAGGTAAGTTCACCACCTTTTATGCTCTTCATTTAGGTCCATCGCATAGCATATGCATGTTAATTTCTAAATCGTTTAGATGCATATAGAGTAAAGCATGATCCTTATTATTCCGCTGCAGCATGTCTTTTGATGTTTTCCCTTCACTTTCATAGTCGCTTCGCTTCGCATCTTATGGAACCTGTCCTTTGAGTTCCATTCTTAGTTGCACTCCTTCAAGCCTTTTCATAGGGATAAGTCTTTTTCTCCTTTCCATCGAGACCTTGTTCATTGATTCAGATTCATATAGATTTCTGACTCATCCTACGTAGCTTAATTAAGACTTCAATCATTCTTTAAGCCTTAACATTTGAAATGAAGGATCATTCTTTCTCTCCTTTCAGTTGAGACCTAGTTTATTGATTTAGATTCTTATAGATTTCTGACTCATCCTACGTAGCTTAATCAGGCTAAAAGAAAAACTTTCGGTCGCTTTTCACATTCTTTGAGCATCCTTCGGATAGAAGTTTAAGTGGTCCTATGTCCCTCTTCCTATGATCGAGCTACTTCTGTCCCTCCTTCGAACTTTTTTGAGTGGAATTTCGTTTTTTAGCCTTTATTCATTGATTCAGTCGAGATGTTCGAAGTAGCTTAATTAAGCAAGGAGTCTGAAGTCCGGAGGACTATTGTCATAGTGACTTTCTTTATTGAAAGGGATTTGACCTCTTTATTCAATGATCTTTGAGCCTATTAAAAGGCAAACTTTCAGTCGCTTCTCAAATTCTTCTTAAATTCTTCTTCTATCAATCTATGGGCTCCTCCTAATTGGATAAGGAAGGAATTCACTTTCAAATTCTGTGATAATTCTTTGATCCTTATTTTTTTGAGTTGAGTTATTTCAAAAAATAAAGGGATCCTTCACAGAATAATGTATAAAGACTTCGCTTTCAACTCCTAATGAAGCCTTATAGTCGAGTTATTTTATAATGTACTCCACCTTCGACGTCTTCAATCCATATAAACCTCTTCCATATTCATTTGTGGATCAAAGAGGTTCCGGAGGTCAAAAGGACGGTCTCGCTATTTGAGTGGAATGAAAGCGTCCGGGTTCCCTTGTTCATTGAGGACCTTTGTTTTTGAGCGGACCAGTCTCGCTATTTCATAACCTAGAAAAAAGGACGAACATTCTTTGAGCCCGTAGTTAGGAGTTTTTTGAGTGACTTTATTCAATGATCTTTGAGCCTTTGTTCATTGATTCAGTCGAGACCTCCTACGGTCCTCAGTCCTCGTTTTAGTGGAGTTTCCATATTAGCTTTTCAGGATTTCTTAGTCCTTCGCAACTCCTCTCAACTCTTCTTAAAGTTTTTGATCCTTTCATTCTTAGTCGAGCTGCTTCGCACCTTTCCAGTCGCTTCTCAAACCTTTGACTTTATTCGCAAATTCTTTGCTCATCTGGACCCCTTAATAATTGCCTGTGGAATGAATGAGTCCTCCGGACCATATTAGTGGAATGAACTTCGTTGCACTCCTAATCCTAATAAGGGATAAGTCCTTTCGCTTTCATTCAAATTCTTTTTTCCTTTGATTTTGAGTCGTCCGGAGGCGCGAAGCGAAACGACTGTTAAGGAGTGCATTATGAAATAGCTCTCCAAATAAGTAAGGAGAGGGGAGAAGCGAAACGACTGTATTATTTAAGGAGTGGTATTATTCAATAGCTCTCCAAATAGTAAGGAGAGGGTCAAAGAATTTGAGGCGAAACGACTGTATTATAATATTAATAGGAGCCCTTTATTTGAAGAAATAGCTCTCCAAATAAGGAAGGTTCGAAGAAACTCGACTGATAAGGAGAGGAGAGGGTCAAAGATGAATAAAGAAAGCGAAACGACTGTATTATAATATTAATAGGAGTGCAACGAAAGAAATCCATATAAACATAATGCGCTCCTCTCCTATATCTGAAACTACGAGTACCTTCGCTCCTGAAAATAGTTCAGGGATCAGGACTTCGCTTTCAACTCCTAACGGAGCCTCTCCTTTTAAGAACATAAGCTACGCCCTTCTTCATTCAGGCTCCTTCTAATAAGGAAGGAATTCGCTTTCAAGTCCTAACCTTTGTATCCTTGAAGATGAATATGGATTCAATTAAGGGTCCGTCCTCTTGACTCAGAAATCCATATTCAAATTCATGCCAGTCGCTTCGCTTCGCGCCTTATTCAGTTTATGACTTTCATAGAAAACCTTCTACGTCCTAATCTCTTATTTATGGGACTCCTTCTACGTTGTGCTTCTCTTCTTCTTTCTTTCTTCTCAAATTCGTCGCAAATTCTTTGCTCCTTCGATCATTCTTTGAGCCTGTGGATCAAATCAGTGACTTTCTTTATTGAAAGGGATTTGACCCTCTTCTTCATTCTACTCAAATTCGTCTATCAAACAAGTCCAGAGGAGCGAAAGCGGCTCGACTCCCACGGGGAATAAGGGTCCGGACTAGCTTAATTAGGCAAGAGGAGGACTAGTCTCATTAGATAAGGAGTTCATTGAGGACCGTTGTTTTTCCATATTCATATTCCACTTCGGACCAAGTCTTCTTTATTTATGTTTGAGTAGGTTTGGAAGTTCAGAGTCCTAACCTTTGTATCCTGTCTCGCTATTTTAGTGGATAAAAGAGGCTCAAAGTATTTGAGTCGTCTTGACCCTTATTTATCCTTGCCGGGTAGAAGTAGTTTAATTAGAGTTGTTCTCCCTTGTTCATTGACTCCTCTTCTCTCCTCTGAAATCAGATTCTTATGAAAAGGGCTCCTTCACAGTCGCTTCGCTTCGCGCCTTGACTTTCTTTTTGATTGAGGGCTCCGTTAGGAGCAAAGAATTTTCCATTGATAAGGACATATCCTCTGATTTCTTTACGAGGTCTGAATATCGACTTAGTTGTTTTTGTGTTCATATCTTATCGGGTTAACGCACTTTATCCTATTCAGTGTGACGGCTTTATGGGTCAGCTAAACTCATTCCTTTTTATTATGTTGTGAGGCTTTGGTTACCGGCTCAGGCTTCCAAAGGCGACCCTCTCTCGTTTCCGGCGGTTTCCGTCATTGAAGTAGCCTTTCTTTCGTCATCCTACCAAAGTACGTTCGAAGAAGCGAGCCCTTATTAGTTTAGTAAAGTCAAGCTCCAAAAAAGGAGAGATTAACCTGCGGTGCGCTACGCCCGGCAACTCATCAAGCAATTTCTTTGCGCTTGAATTTCAGTGATGAGGTCGCAAAGAGAGGGAAGTAGGGCTCCTATTGACTAAAGGTGGATTCTTCGCTTTCCTTTATCAAGTCGCTATTCAGCCCCTACTACTGACTTTTGACTTTGTCTTTGATTTTTGATTCATCTAATTCAAACCCAACTAGTCGTATGAGGTGATCTTCTGTCTGCTTTGGATATGAGGAATGAAAAGGCAAAGTCCGGTTCATTGTAGTTTGTATTCGGTCTGAGATATAGGATCCAGGAAAGCGCCCTCTTTTTGTCATCCCTGCAGCTTTCCAGATTGAGTATTGAAGGCATGGCCTAGGACCTTCAAGTTTTCGCCTATTGGGAATACACCCCTCTTTTTTTTTCTAAGGCTAGAAAGAGAATGCCCGCCAAGTTCAGATAAGGAAATGCTTCCCCCAACCATTAAAGGAAAGGCTCGACGAGGAAGGAAAAGGCTTTCGGAGATCGAGATTGGATTTCTTTTGAATCAAAAAAAAAGAAGAAGGCCGAGGATGGCCTAGGGTGCGTCTTATCTGAAGGGAACACGCTTTTTCGACCGCGGTGGTATGATTGCCGGGCCCTCTCCTCGTTCCGCCCGCGCTCTGGCCTATTAGGTAGGATAGCAGTCTTCGGGCTTTGCCTGCCCTTGATCATAAAGAATTCCGGCTTGGCCCGGGAAAGCGCTGGCAACAAGAGAAAGGAAGGGGTCCATGTAGCTGCTGCGCCCGCCCCCTTCTTAGTCAATGGGGCAGCAGGTTCGGCATCCACTAGAAAAGAGAGAATCCACTGAAGATAACCACGCCTCTGCTAGGCAGCGTGTGGAATGGCCGAGAGCGGACCTTTTTGGATAG

mRNA sequence

ATGGATGCGTCCCGCTCTGTAGTTAGTATAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGGGGGCATCCTATGTGAGGGCAGCTCATCATCGCTGGCCCAATAAGCCTTCCATTTCAGGGATTCATACCCGGAAGGTTAAAATTAGTCAAGACGGAGTAAAGCATGATCCTTATTATTCCGCTGCAGCATGTCTTTTGATGTTTTCCCTTCACTTTCATAGTCGCTTCGCTTCGCATCTTATGGAACCTGGATTTGACCCTCTTCTTCATTCTACTCAAATTCGTCTATCAAACAAGTCCAGAGGAGCGAAAGCGGCTCGACTCCCACGGGGAATAAGGGTTTGGAAGTTCAGAGTCCTAACCTTTGTATCCTGTCTCGCTATTTTAGTGGATAAAAGAGGCTCAAAGTATTTGAGTCGTCTTGACCCTTATTTATCCTTGCCGGATTCTTATGAAAAGGGCTCCTTCACAGTCGCTTCGCTTCGCGCCTTGACTTTCTTTTTGATTGAGGGCTCCGTTAGGAGCAAAGAATTTTCCATTGATAAGGACATATCCTCTGATTTCTTTACGAGGCTTTGGTTACCGGCTCAGGCTTCCAAAGGCGACCCTCTCTCGTTTCCGGCGGTTTCCGTCATTGAAGTAGCCTTTCTTTCGTCATCCTACCAAAAAAGAGAATGCCCGCCAAGTTCAGATAAGGAAATGCTTCCCCCAACCATTAAAGGAAAGGCTCGACGAGGAAGGAAAAGGCTTTCGGAGATCGAGATTGGATTTCTTTTGAATCAAAAAAAAAGAAGAAGGCCGAGGATGGCCTAGGCAGGTTCGGCATCCACTAGAAAAGAGAGAATCCACTGAAGATAACCACGCCTCTGCTAGGCAGCGTGTGGAATGGCCGAGAGCGGACCTTTTTGGATAG

Coding sequence (CDS)

ATGGATGCGTCCCGCTCTGTAGTTAGTATAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGGGGGCATCCTATGTGAGGGCAGCTCATCATCGCTGGCCCAATAAGCCTTCCATTTCAGGGATTCATACCCGGAAGGTTAAAATTAGTCAAGACGGAGTAAAGCATGATCCTTATTATTCCGCTGCAGCATGTCTTTTGATGTTTTCCCTTCACTTTCATAGTCGCTTCGCTTCGCATCTTATGGAACCTGGATTTGACCCTCTTCTTCATTCTACTCAAATTCGTCTATCAAACAAGTCCAGAGGAGCGAAAGCGGCTCGACTCCCACGGGGAATAAGGGTTTGGAAGTTCAGAGTCCTAACCTTTGTATCCTGTCTCGCTATTTTAGTGGATAAAAGAGGCTCAAAGTATTTGAGTCGTCTTGACCCTTATTTATCCTTGCCGGATTCTTATGAAAAGGGCTCCTTCACAGTCGCTTCGCTTCGCGCCTTGACTTTCTTTTTGATTGAGGGCTCCGTTAGGAGCAAAGAATTTTCCATTGATAAGGACATATCCTCTGATTTCTTTACGAGGCTTTGGTTACCGGCTCAGGCTTCCAAAGGCGACCCTCTCTCGTTTCCGGCGGTTTCCGTCATTGAAGTAGCCTTTCTTTCGTCATCCTACCAAAAAAGAGAATGCCCGCCAAGTTCAGATAAGGAAATGCTTCCCCCAACCATTAAAGGAAAGGCTCGACGAGGAAGGAAAAGGCTTTCGGAGATCGAGATTGGATTTCTTTTGAATCAAAAAAAAAGAAGAAGGCCGAGGATGGCCTAG

Protein sequence

MDASRSVVSINDVILNRSCRDMGVGASYVRAAHHRWPNKPSISGIHTRKVKISQDGVKHDPYYSAAACLLMFSLHFHSRFASHLMEPGFDPLLHSTQIRLSNKSRGAKAARLPRGIRVWKFRVLTFVSCLAILVDKRGSKYLSRLDPYLSLPDSYEKGSFTVASLRALTFFLIEGSVRSKEFSIDKDISSDFFTRLWLPAQASKGDPLSFPAVSVIEVAFLSSSYQKRECPPSSDKEMLPPTIKGKARRGRKRLSEIEIGFLLNQKKRRRPRMA
Homology
[Close]
BLAST of MELO3C033684 vs. NCBI nr
Match: KAA0045355.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-10
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 2   DASRSVVSINDVILNRSCRDMGVGASYVRAAHHRWPNKPSISGIHTRK 50
           DA+RSV+S NDVILN SCRDMG GASYVRAA HRWPNKP I G+   K
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASYVRAAQHRWPNKPPILGVEKEK 158

[Close]
BLAST of MELO3C033684 vs. NCBI nr
Match: KAA0041137.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 6.6e-04
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 4    SRSVVSINDVILNRSCRDMGVGASYVRAAHHRWPNKPSISGI 46
            +RSVVS NDVILNRSCRDMG     V+A   RWPNKP IS +
Sbjct: 1002 ARSVVSTNDVILNRSCRDMG-----VKAVQWRWPNKPPISRV 1038

[Close]
BLAST of MELO3C033684 vs. ExPASy TrEMBL
Match: A0A5A7TVE0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001340 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.0e-11
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 2   DASRSVVSINDVILNRSCRDMGVGASYVRAAHHRWPNKPSISGIHTRK 50
           DA+RSV+S NDVILN SCRDMG GASYVRAA HRWPNKP I G+   K
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASYVRAAQHRWPNKPPILGVEKEK 158

[Close]
BLAST of MELO3C033684 vs. ExPASy TrEMBL
Match: A0A5A7THN2 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00500 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 4    SRSVVSINDVILNRSCRDMGVGASYVRAAHHRWPNKPSISGI 46
            +RSVVS NDVILNRSCRDMG     V+A   RWPNKP IS +
Sbjct: 1002 ARSVVSTNDVILNRSCRDMG-----VKAVQWRWPNKPPISRV 1038

The following BLAST results are available for this feature:
BLAST of MELO3C033684 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045355.11.2e-1075.00retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
KAA0041137.16.6e-0466.67putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
BLAST of MELO3C033684 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033684 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TVE06.0e-1175.00Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
A0A5A7THN23.2e-0466.67Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C033684 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..251

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033684.1MELO3C033684.1mRNA