MELO3C033664 (gene) Melon (DHL92) v4

Overview
NameMELO3C033664
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCharged multivesicular body protein 7 isoform X1
Locationchr07: 5726105 .. 5726518 (-)
RNA-Seq ExpressionMELO3C033664
SyntenyMELO3C033664
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGTCGTCGCCCCTGCCTCTCTTCTCTCCATTGAGATCTATGGCAAAATCTCCCTCCGTCTGTCGAAGCCGCCACTGTCACCTTAGTTCTCCGTTAAGCTTCTGTTCGTCTTAGCCTAAGCCGCCACACCCCGAGCTGCTCCCATTTTTGTCAACCGTCTCCTCTGCGTTGCGAGGTACAAATCTGAAGTGAGTGGATTGTGTTTGCTCCAACCAGTGTTTTTTCAAGAAGCTCCGACCGCTGTTGTTGCATCTCCACGAACCCTACCACCACCGTCACGATCTCCCATTTGCATGGAGCTTCTTGCACCATCCATCCTTCTCTGTAGCACGCTGCCGCACCAAGGCGTGCTCTCCTCACCGTTGAAGAAGCCTCCGTCCTCGAGCAGTCATGTCCTAAGTGTGGGTGCATAG

mRNA sequence

GCCGTCGTCGCCCCTGCCTCTCTTCTCTCCATTGAGATCTATGGCAAAATCTCCCTCCGTCTGTCGAAGCCGCCACTGTCACCTTAGTTCTCCGTTAAGCTTCTGTTCGTCTTAGCCTAAGCCGCCACACCCCGAGCTGCTCCCATTTTTGTCAACCGTCTCCTCTGCGTTGCGAGGTACAAATCTGAAGTGAGTGGATTGTGTTTGCTCCAACCAGTGTTTTTTCAAGAAGCTCCGACCGCTGTTGTTGCATCTCCACGAACCCTACCACCACCGTCACGATCTCCCATTTGCATGGAGCTTCTTGCACCATCCATCCTTCTCTGTAGCACGCTGCCGCACCAAGGCGTGCTCTCCTCACCGTTGAAGAAGCCTCCGTCCTCGAGCAGTCATGTCCTAAGTGTGGGTGCATAG

Coding sequence (CDS)

ATGGAGCTTCTTGCACCATCCATCCTTCTCTGTAGCACGCTGCCGCACCAAGGCGTGCTCTCCTCACCGTTGAAGAAGCCTCCGTCCTCGAGCAGTCATGTCCTAAGTGTGGGTGCATAG

Protein sequence

MELLAPSILLCSTLPHQGVLSSPLKKPPSSSSHVLSVGA
Homology
BLAST of MELO3C033664 vs. NCBI nr
Match: TYK03645.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 9.1e-08
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   MELLAPSILLCSTLPHQGVLSSPLKKPPSSSSHVLSVGA 40
           MEL+APSILL STLPHQGVLSSPLKKPPSSSSHV SV A
Sbjct: 143 MELIAPSILLRSTLPHQGVLSSPLKKPPSSSSHVPSVDA 181

BLAST of MELO3C033664 vs. NCBI nr
Match: KAA0050041.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 9.1e-08
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   MELLAPSILLCSTLPHQGVLSSPLKKPPSSSSHVLSVGA 40
           MEL+APSILL STLPHQGVLSSPLKKPPSSSSHV SV A
Sbjct: 143 MELIAPSILLRSTLPHQGVLSSPLKKPPSSSSHVPSVDA 181

BLAST of MELO3C033664 vs. NCBI nr
Match: KAA0062299.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1    MELLAPSILLCSTLPHQGVLSSPLKKPPSSSSHVLSVGA 40
            MEL+APSILL STL HQG+LS PLKKPPSSSSHV SVGA
Sbjct: 1007 MELVAPSILLRSTLLHQGMLSLPLKKPPSSSSHVPSVGA 1045

BLAST of MELO3C033664 vs. NCBI nr
Match: KAA0047344.1 (zinc finger protein ZAT11 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 1   MELLAPSILLCSTLPHQGVLSSPLKKPPSSSSHVLS 37
           +EL+APSI+L STLPHQGVL+SPLKKP SSS+HV S
Sbjct: 189 VELVAPSIILRSTLPHQGVLTSPLKKPSSSSNHVPS 224

BLAST of MELO3C033664 vs. ExPASy TrEMBL
Match: A0A5A7U8W2 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00170 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-08
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   MELLAPSILLCSTLPHQGVLSSPLKKPPSSSSHVLSVGA 40
           MEL+APSILL STLPHQGVLSSPLKKPPSSSSHV SV A
Sbjct: 143 MELIAPSILLRSTLPHQGVLSSPLKKPPSSSSHVPSVDA 181

BLAST of MELO3C033664 vs. ExPASy TrEMBL
Match: A0A5D3BX22 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00750 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-08
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 1   MELLAPSILLCSTLPHQGVLSSPLKKPPSSSSHVLSVGA 40
           MEL+APSILL STLPHQGVLSSPLKKPPSSSSHV SV A
Sbjct: 143 MELIAPSILLRSTLPHQGVLSSPLKKPPSSSSHVPSVDA 181

BLAST of MELO3C033664 vs. ExPASy TrEMBL
Match: A0A5A7V9C3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1    MELLAPSILLCSTLPHQGVLSSPLKKPPSSSSHVLSVGA 40
            MEL+APSILL STL HQG+LS PLKKPPSSSSHV SVGA
Sbjct: 1007 MELVAPSILLRSTLLHQGMLSLPLKKPPSSSSHVPSVGA 1045

BLAST of MELO3C033664 vs. ExPASy TrEMBL
Match: A0A5A7TWK4 (Zinc finger protein ZAT11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001660 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.8e-05
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 1   MELLAPSILLCSTLPHQGVLSSPLKKPPSSSSHVLS 37
           +EL+APSI+L STLPHQGVL+SPLKKP SSS+HV S
Sbjct: 189 VELVAPSIILRSTLPHQGVLTSPLKKPSSSSNHVPS 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK03645.19.1e-0889.74charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0050041.19.1e-0889.74charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0062299.12.9e-0684.62pol protein [Cucumis melo var. makuwa][more]
KAA0047344.11.6e-0477.78zinc finger protein ZAT11 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U8W24.4e-0889.74Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3BX224.4e-0889.74Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7V9C31.4e-0684.62Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE... [more]
A0A5A7TWK47.8e-0577.78Zinc finger protein ZAT11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033664.1MELO3C033664.1mRNA