Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGCATGCATTTTGTTTGTGACTGTTAAATGTGAAATTGTGAAATTACTAACGTACTTCATGTATTTCTTGTAATTTGTCATTCTCAGTATGTCAACCTCAAACCGTGCCCCGAGACATGTCTGGACGAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTTAATGGAGTTGGTGTCAATGAGGGGATGGAAATCGGATAATGGTACGTTTTAGCCAGGTTACCTAGCCAGTTGGTACGCATGATTGGCGGAGAAACTACCTGGATGTCAGGTCCGCCCAAGAACTGTAATTGACTATAGAATAAAGATAGTGAAGCGGACATTCCAGGCCATCGTCGAAATGTGGGACCAGTGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAAGGATTATATGATAATTGGGTTAGGGTAAGGAAAATAAGATAAACGTCACACAACGTTCGTAATGTACATTTACTTAACAATTTGTTTAACAGTACTCAAAAGTGATCTTTTTTTTTTCCGCAGTCGCATCCTGTAGCGAAGGGACTCTTGAACAAATTGTTTCTGTATTACGACGAACTTACATATGTGTTCGGTCGTAATAGGGCGACAGGTCGGTTCGCTAAGACATTCACTGACGTGGGGTCTAACGAGCCTGGCGGGTATGACGGATTTGATATGGGGGATGGAAACGAGGAGATTTCGCCTGTGTACAACCAGGGGATTGACCTGACGCAGGACGATGTACGCGCATCATGACCTTCTCGCGCTTCAAAGGGTAGGACCGGATCGAATGGATCCAAGAGGAAGAGGGGAAGTCAGCCAGAGGTGGATGCTGAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCTCCCGCCAATGACAACCATGTGCACACAAAATTCTTCTGCATATTGCGTAAGATACCAAAACTAACGAGTTTGGATAGGGCGCTATTATAA
mRNA sequence
ATGTACGCATGCATTTTGTTTGTGACTGTTAAATGTGAAATTGTGAAATTACTAACGTACTTCATTATGTCAACCTCAAACCGTGCCCCGAGACATGTCTGGACGAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTTAATGGAGTTGGTGTCAATGAGGGGATGGAAATCGGATAATGATAGTGAAGCGGACATTCCAGGCCATCGTCGAAATGTGGGACCAGTGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAAGGATTATATGATAATTGGGTTAGGTCGCATCCTGTAGCGAAGGGACTCTTGAACAAATTGTTTCTGTATTACGACGAACTTACATATGTGTTCGGTCGTAATAGGGCGACAGGTCGGTTCGCTAAGACATTCACTGACGTGGGGTCTAACGAGCCTGGCGGGTATGACGGATTTGATATGGGGGATGGAAACGAGGAGATTTCGCCTGTGTACAACCAGGGGATTGACCTGACGCAGGACGATGGTAGGACCGGATCGAATGGATCCAAGAGGAAGAGGGGAAGTCAGCCAGAGGTGGATGCTGAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCTCCCGCCAATGACAACCATGTGCACACAAAATTCTTCTGCATATTGCGTAAGATACCAAAACTAACGAGTTTGGATAGGGCGCTATTATAA
Coding sequence (CDS)
ATGTACGCATGCATTTTGTTTGTGACTGTTAAATGTGAAATTGTGAAATTACTAACGTACTTCATTATGTCAACCTCAAACCGTGCCCCGAGACATGTCTGGACGAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTTAATGGAGTTGGTGTCAATGAGGGGATGGAAATCGGATAATGATAGTGAAGCGGACATTCCAGGCCATCGTCGAAATGTGGGACCAGTGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAAGGATTATATGATAATTGGGTTAGGTCGCATCCTGTAGCGAAGGGACTCTTGAACAAATTGTTTCTGTATTACGACGAACTTACATATGTGTTCGGTCGTAATAGGGCGACAGGTCGGTTCGCTAAGACATTCACTGACGTGGGGTCTAACGAGCCTGGCGGGTATGACGGATTTGATATGGGGGATGGAAACGAGGAGATTTCGCCTGTGTACAACCAGGGGATTGACCTGACGCAGGACGATGGTAGGACCGGATCGAATGGATCCAAGAGGAAGAGGGGAAGTCAGCCAGAGGTGGATGCTGAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCTCCCGCCAATGACAACCATGTGCACACAAAATTCTTCTGCATATTGCGTAAGATACCAAAACTAACGAGTTTGGATAGGGCGCTATTATAA
Protein sequence
MYACILFVTVKCEIVKLLTYFIMSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDSEADIPGHRRNVGPVCSGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRNRATGRFAKTFTDVGSNEPGGYDGFDMGDGNEEISPVYNQGIDLTQDDGRTGSNGSKRKRGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVHTKFFCILRKIPKLTSLDRALL
Homology
BLAST of MELO3C033629 vs. NCBI nr
Match:
KAA0065821.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 352.8 bits (904), Expect = 2.3e-93
Identity = 176/242 (72.73%), Postives = 195/242 (80.58%), Query Frame = 0
Query: 23 MSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDSEADIPGHRRNV------GPVC 82
MSTSNRAPRHVWTKEEEGTLVECLMELVS+ GWKSDN + PG+ + GP C
Sbjct: 1 MSTSNRAPRHVWTKEEEGTLVECLMELVSLGGWKSDNGTFR--PGYLAQLVIVEIRGPAC 60
Query: 83 SGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRNRATGRFAKTF 142
SGF WNDEEKCI+AEK L+DNWVRSHP AKGLLNK F YYDE TYVFGR+RATGRF +TF
Sbjct: 61 SGFEWNDEEKCIVAEKELFDNWVRSHPTAKGLLNKPFPYYDEFTYVFGRDRATGRFTETF 120
Query: 143 TDVGSNEP-GGYDGFDMGDGNEEISPVYNQGIDLTQDD-----------GRTGSNGSKRK 202
DVGSNEP GGYD FDMGDGN++ PVY+QGIDL+QDD GRTGS+GSKRK
Sbjct: 121 ADVGSNEPGGGYDRFDMGDGNKDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRK 180
Query: 203 RGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVHTKFFCILRKIPKLTSLDRA 247
RGSQ + + E IHLALDQTNEQLR IAEWPAR ANDNHV TKFFCILR++P+LT+LDRA
Sbjct: 181 RGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTKFFCILREMPELTNLDRA 240
BLAST of MELO3C033629 vs. NCBI nr
Match:
TYJ96560.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 351.7 bits (901), Expect = 5.2e-93
Identity = 174/242 (71.90%), Postives = 195/242 (80.58%), Query Frame = 0
Query: 23 MSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDSEADIPGHRRNV------GPVC 82
MSTSNRAPRHVWTKEEEGTLVECLMELVS+ GWKSDN + PG+ + GP C
Sbjct: 1 MSTSNRAPRHVWTKEEEGTLVECLMELVSLGGWKSDNGTFR--PGYLAQLVIVEIRGPAC 60
Query: 83 SGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRNRATGRFAKTF 142
SGF WNDEEKCI+AEK L+DNWVRSHP AKGLLNK F YYDE TYVFGR+RATGRF +TF
Sbjct: 61 SGFEWNDEEKCIVAEKELFDNWVRSHPTAKGLLNKPFPYYDEFTYVFGRDRATGRFTETF 120
Query: 143 TDVGSNEP-GGYDGFDMGDGNEEISPVYNQGIDLTQDD-----------GRTGSNGSKRK 202
DVGSNEP GGYD FDMGDGN++ PVY+QG+D++QDD GRTGS+GSKRK
Sbjct: 121 ADVGSNEPGGGYDRFDMGDGNKDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 180
Query: 203 RGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVHTKFFCILRKIPKLTSLDRA 247
RGSQ + + E IHLALDQTNEQLR IAEWPAR ANDNHV TKFFCILR++P+LT+LDRA
Sbjct: 181 RGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTKFFCILREMPELTNLDRA 240
BLAST of MELO3C033629 vs. NCBI nr
Match:
KAA0058875.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 350.5 bits (898), Expect = 1.2e-92
Identity = 177/261 (67.82%), Postives = 197/261 (75.48%), Query Frame = 0
Query: 23 MSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDSEADIPGHRRNV---------- 82
MSTSNRAPRHVWT+EE+GTLVECLMELVSM GWKSDN + PG+ +
Sbjct: 1 MSTSNRAPRHVWTREEKGTLVECLMELVSMGGWKSDNGTFR--PGYLAQLVRATTVIDCR 60
Query: 83 ---------------GPVCSGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYD 142
GP CSGFGWNDEE+CI+AEK L+DNWVRSHP AKGLLNK F YYD
Sbjct: 61 IKTLKRTFQAIAEMRGPACSGFGWNDEEECIVAEKELFDNWVRSHPAAKGLLNKSFPYYD 120
Query: 143 ELTYVFGRNRATGRFAKTFTDVGSNEP-GGYDGFDMGDGNEEISPVYNQGIDLTQDD--- 202
ELTYVFGR RATGRFA+TF DVGSNEP GGYD FDMGDGNE+ PVY+QG+D++QDD
Sbjct: 121 ELTYVFGRERATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRA 180
Query: 203 --------GRTGSNGSKRKRGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVH 247
GRTGS+GSKRKRGSQ + D E IHLALDQTNEQLR IAEWPAR ANDNHV
Sbjct: 181 SRPSRAPEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPARNLANDNHVR 240
BLAST of MELO3C033629 vs. NCBI nr
Match:
KAA0032859.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 348.6 bits (893), Expect = 4.4e-92
Identity = 177/248 (71.37%), Postives = 195/248 (78.63%), Query Frame = 0
Query: 23 MSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDSEADIPGHRRNV---------- 82
MSTSNRA RHVWT+EEEGTLVECLMELVSM GWKSDN + PG+ +
Sbjct: 1 MSTSNRALRHVWTREEEGTLVECLMELVSMGGWKSDNGTFR--PGYLAQLVRMMAEKLPG 60
Query: 83 --GPVCSGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRNRATG 142
GP CSGFGWNDEEKCI+AEK L+DNWVRSHP AKGLLNK F YYDELTYVFGR+RATG
Sbjct: 61 CQGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATG 120
Query: 143 RFAKTFTDVGSNEP-GGYDGFDMGDGNEEISPVYNQGIDLTQDD-----------GRTGS 202
RFA+TF DVGSNEP GGYD F+MGDGNE+ PVY+QG+D+ QDD GRTGS
Sbjct: 121 RFAETFADVGSNEPGGGYDRFNMGDGNEDFLPVYSQGVDILQDDVRASRPSRASEGRTGS 180
Query: 203 NGSKRKRGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVHTKFFCILRKIPKL 247
+GSKRKRGSQ + D E IHLALDQTNEQLR IAEWPAR ANDNHV TKFF ILR++P+L
Sbjct: 181 SGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTKFFRILREMPEL 240
BLAST of MELO3C033629 vs. NCBI nr
Match:
KAA0037744.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 347.4 bits (890), Expect = 9.9e-92
Identity = 173/251 (68.92%), Postives = 194/251 (77.29%), Query Frame = 0
Query: 23 MSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDS-------------EADIPGHR 82
MSTSNRAPRHVWT+EEEGTLVECLMELVSM GWKSDN + +PG +
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFHPGYLAQLVRMMAEKLPGCQ 60
Query: 83 RNV---GPVCSGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRN 142
GP CSGFGWNDEEKCI+AEK L+DNWVRSHP AKGLLNK F YYDELTYVFGR+
Sbjct: 61 AIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFSYYDELTYVFGRD 120
Query: 143 RATGRFAKTFTDVGSNEP-GGYDGFDMGDGNEEISPVYNQGIDLTQDD-----------G 202
RATGRF +TF DVGSNEP GGYD FDMGDGNE+ PVY+QG+D++QDD G
Sbjct: 121 RATGRFGETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEG 180
Query: 203 RTGSNGSKRKRGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVHTKFFCILRK 246
RTGS+GSKRKRG Q + D E IHLAL+QTNE+LR IAEWPAR ANDNHV T+FFCILR+
Sbjct: 181 RTGSSGSKRKRGRQRDFDVEAIHLALNQTNEKLRQIAEWPARNLANDNHVRTEFFCILRE 240
BLAST of MELO3C033629 vs. ExPASy TrEMBL
Match:
A0A5A7VJG4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001280 PE=4 SV=1)
HSP 1 Score: 352.8 bits (904), Expect = 1.1e-93
Identity = 176/242 (72.73%), Postives = 195/242 (80.58%), Query Frame = 0
Query: 23 MSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDSEADIPGHRRNV------GPVC 82
MSTSNRAPRHVWTKEEEGTLVECLMELVS+ GWKSDN + PG+ + GP C
Sbjct: 1 MSTSNRAPRHVWTKEEEGTLVECLMELVSLGGWKSDNGTFR--PGYLAQLVIVEIRGPAC 60
Query: 83 SGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRNRATGRFAKTF 142
SGF WNDEEKCI+AEK L+DNWVRSHP AKGLLNK F YYDE TYVFGR+RATGRF +TF
Sbjct: 61 SGFEWNDEEKCIVAEKELFDNWVRSHPTAKGLLNKPFPYYDEFTYVFGRDRATGRFTETF 120
Query: 143 TDVGSNEP-GGYDGFDMGDGNEEISPVYNQGIDLTQDD-----------GRTGSNGSKRK 202
DVGSNEP GGYD FDMGDGN++ PVY+QGIDL+QDD GRTGS+GSKRK
Sbjct: 121 ADVGSNEPGGGYDRFDMGDGNKDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRK 180
Query: 203 RGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVHTKFFCILRKIPKLTSLDRA 247
RGSQ + + E IHLALDQTNEQLR IAEWPAR ANDNHV TKFFCILR++P+LT+LDRA
Sbjct: 181 RGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTKFFCILREMPELTNLDRA 240
BLAST of MELO3C033629 vs. ExPASy TrEMBL
Match:
A0A5D3B9L6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002220 PE=4 SV=1)
HSP 1 Score: 351.7 bits (901), Expect = 2.5e-93
Identity = 174/242 (71.90%), Postives = 195/242 (80.58%), Query Frame = 0
Query: 23 MSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDSEADIPGHRRNV------GPVC 82
MSTSNRAPRHVWTKEEEGTLVECLMELVS+ GWKSDN + PG+ + GP C
Sbjct: 1 MSTSNRAPRHVWTKEEEGTLVECLMELVSLGGWKSDNGTFR--PGYLAQLVIVEIRGPAC 60
Query: 83 SGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRNRATGRFAKTF 142
SGF WNDEEKCI+AEK L+DNWVRSHP AKGLLNK F YYDE TYVFGR+RATGRF +TF
Sbjct: 61 SGFEWNDEEKCIVAEKELFDNWVRSHPTAKGLLNKPFPYYDEFTYVFGRDRATGRFTETF 120
Query: 143 TDVGSNEP-GGYDGFDMGDGNEEISPVYNQGIDLTQDD-----------GRTGSNGSKRK 202
DVGSNEP GGYD FDMGDGN++ PVY+QG+D++QDD GRTGS+GSKRK
Sbjct: 121 ADVGSNEPGGGYDRFDMGDGNKDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 180
Query: 203 RGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVHTKFFCILRKIPKLTSLDRA 247
RGSQ + + E IHLALDQTNEQLR IAEWPAR ANDNHV TKFFCILR++P+LT+LDRA
Sbjct: 181 RGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTKFFCILREMPELTNLDRA 240
BLAST of MELO3C033629 vs. ExPASy TrEMBL
Match:
A0A5A7UZ66 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00390 PE=4 SV=1)
HSP 1 Score: 350.5 bits (898), Expect = 5.6e-93
Identity = 177/261 (67.82%), Postives = 197/261 (75.48%), Query Frame = 0
Query: 23 MSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDSEADIPGHRRNV---------- 82
MSTSNRAPRHVWT+EE+GTLVECLMELVSM GWKSDN + PG+ +
Sbjct: 1 MSTSNRAPRHVWTREEKGTLVECLMELVSMGGWKSDNGTFR--PGYLAQLVRATTVIDCR 60
Query: 83 ---------------GPVCSGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYD 142
GP CSGFGWNDEE+CI+AEK L+DNWVRSHP AKGLLNK F YYD
Sbjct: 61 IKTLKRTFQAIAEMRGPACSGFGWNDEEECIVAEKELFDNWVRSHPAAKGLLNKSFPYYD 120
Query: 143 ELTYVFGRNRATGRFAKTFTDVGSNEP-GGYDGFDMGDGNEEISPVYNQGIDLTQDD--- 202
ELTYVFGR RATGRFA+TF DVGSNEP GGYD FDMGDGNE+ PVY+QG+D++QDD
Sbjct: 121 ELTYVFGRERATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRA 180
Query: 203 --------GRTGSNGSKRKRGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVH 247
GRTGS+GSKRKRGSQ + D E IHLALDQTNEQLR IAEWPAR ANDNHV
Sbjct: 181 SRPSRAPEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPARNLANDNHVR 240
BLAST of MELO3C033629 vs. ExPASy TrEMBL
Match:
A0A5A7SUL5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00220 PE=4 SV=1)
HSP 1 Score: 348.6 bits (893), Expect = 2.1e-92
Identity = 177/248 (71.37%), Postives = 195/248 (78.63%), Query Frame = 0
Query: 23 MSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDSEADIPGHRRNV---------- 82
MSTSNRA RHVWT+EEEGTLVECLMELVSM GWKSDN + PG+ +
Sbjct: 1 MSTSNRALRHVWTREEEGTLVECLMELVSMGGWKSDNGTFR--PGYLAQLVRMMAEKLPG 60
Query: 83 --GPVCSGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRNRATG 142
GP CSGFGWNDEEKCI+AEK L+DNWVRSHP AKGLLNK F YYDELTYVFGR+RATG
Sbjct: 61 CQGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATG 120
Query: 143 RFAKTFTDVGSNEP-GGYDGFDMGDGNEEISPVYNQGIDLTQDD-----------GRTGS 202
RFA+TF DVGSNEP GGYD F+MGDGNE+ PVY+QG+D+ QDD GRTGS
Sbjct: 121 RFAETFADVGSNEPGGGYDRFNMGDGNEDFLPVYSQGVDILQDDVRASRPSRASEGRTGS 180
Query: 203 NGSKRKRGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVHTKFFCILRKIPKL 247
+GSKRKRGSQ + D E IHLALDQTNEQLR IAEWPAR ANDNHV TKFF ILR++P+L
Sbjct: 181 SGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTKFFRILREMPEL 240
BLAST of MELO3C033629 vs. ExPASy TrEMBL
Match:
A0A5A7T2Q2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00400 PE=4 SV=1)
HSP 1 Score: 347.4 bits (890), Expect = 4.8e-92
Identity = 173/251 (68.92%), Postives = 194/251 (77.29%), Query Frame = 0
Query: 23 MSTSNRAPRHVWTKEEEGTLVECLMELVSMRGWKSDNDS-------------EADIPGHR 82
MSTSNRAPRHVWT+EEEGTLVECLMELVSM GWKSDN + +PG +
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFHPGYLAQLVRMMAEKLPGCQ 60
Query: 83 RNV---GPVCSGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRN 142
GP CSGFGWNDEEKCI+AEK L+DNWVRSHP AKGLLNK F YYDELTYVFGR+
Sbjct: 61 AIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFSYYDELTYVFGRD 120
Query: 143 RATGRFAKTFTDVGSNEP-GGYDGFDMGDGNEEISPVYNQGIDLTQDD-----------G 202
RATGRF +TF DVGSNEP GGYD FDMGDGNE+ PVY+QG+D++QDD G
Sbjct: 121 RATGRFGETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEG 180
Query: 203 RTGSNGSKRKRGSQPEVDAEGIHLALDQTNEQLRMIAEWPARAPANDNHVHTKFFCILRK 246
RTGS+GSKRKRG Q + D E IHLAL+QTNE+LR IAEWPAR ANDNHV T+FFCILR+
Sbjct: 181 RTGSSGSKRKRGRQRDFDVEAIHLALNQTNEKLRQIAEWPARNLANDNHVRTEFFCILRE 240
BLAST of MELO3C033629 vs. TAIR 10
Match:
AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 47.8 bits (112), Expect = 1.5e-05
Identity = 24/82 (29.27%), Postives = 42/82 (51.22%), Query Frame = 0
Query: 77 SGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRNRATGRF---A 136
+GF W+ +IA+ +++ ++++HP A+ K Y L ++FG+ + GR+ A
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYTRLA 458
Query: 137 KTF-----TDVGSNEPGGYDGF 151
+ F V NE G DGF
Sbjct: 459 QAFDPSPAETVRMNESGSTDGF 480
BLAST of MELO3C033629 vs. TAIR 10
Match:
AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 46.6 bits (109), Expect = 3.4e-05
Identity = 21/57 (36.84%), Postives = 33/57 (57.89%), Query Frame = 0
Query: 77 SGFGWNDEEKCIIAEKGLYDNWVRSHPVAKGLLNKLFLYYDELTYVFGRNRATGRFA 134
SGFGW+ K A ++ +++++HP K L F ++DEL +FG ATG+ A
Sbjct: 92 SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNA 148
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VJG4 | 1.1e-93 | 72.73 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3B9L6 | 2.5e-93 | 71.90 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7UZ66 | 5.6e-93 | 67.82 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7SUL5 | 2.1e-92 | 71.37 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7T2Q2 | 4.8e-92 | 68.92 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT2G24960.2 | 1.5e-05 | 29.27 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
AT5G27260.1 | 3.4e-05 | 36.84 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |