MELO3C033627 (gene) Melon (DHL92) v4

Overview
NameMELO3C033627
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionAP-3 complex subunit sigma-like
Locationchr09: 2458428 .. 2459094 (+)
RNA-Seq ExpressionMELO3C033627
SyntenyMELO3C033627
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAAATGCACGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTAATTTGAGCCTCAAGAAATTAGTTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAGAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCACGAATGCATATACAAAAGAGGTTGAGAGTTACTTGCCTTCTGATGCAAATATCAATAATGTTGCGAAGGTATTTTAGATTTTATTTGTCTTTGTCTTGAATTAAGGACTATTTTTGTGGTTAGTTTCTGACAGGTACCGTTTGGTCTATTAAAAAAAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTCTGGAAGCAACTCTAGGCATTAAATTCATTATGGTTGTTGGAGAATAGAAACTGTGATTTTATTTGTGTAGTATGATCAGTTTACTCTTAATAGTTGTTAGTTGATTTCTTTGACTGAATAAGTTTTGAACGTACTTTGTTGTTGTGATGTTATCTACTTCTTGTAGATTGGCTCTGCAGTTGGTGGTACTTATTTTGGCTCATGAATTGGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGAAGCCAAGTTTCATTCAAGGTCATTGAGTTGGGTAGATAGAAGTAATGTTTTGTATATGACAATA

mRNA sequence

TTTTAAATGCACGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTAATTTGAGCCTCAAGAAATTAGTTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAGAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCACGAATGCATATACAAAAGAGGTTGAGAGTTACTTGCCTTCTGATGCAAATATCAATAATGTTGCGAAGGTACCGTTTGGTCTATTAAAAAAAATATTGGCTCTGCAGTTGGTGGTACTTATTTTGGCTCATGAATTGGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGAAGCCAAGTTTCATTCAAGGTCATTGAGTTGGGTAGATAGAAGTAATGTTTTGTATATGACAATA

Coding sequence (CDS)

ATGCAGAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCACGAATGCATATACAAAAGAGGTTGAGAGTTACTTGCCTTCTGATGCAAATATCAATAATGTTGCGAAGGTACCGTTTGGTCTATTAAAAAAAATATTGGCTCTGCAGTTGGTGGTACTTATTTTGGCTCATGAATTGGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGA

Protein sequence

MQNYKRNAYTKADLQCTNAYTKEVESYLPSDANINNVAKVPFGLLKKILALQLVVLILAHELEVVEDAECKFI
Homology
[Close]
BLAST of MELO3C033627 vs. NCBI nr
Match: TYK03061.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 2   QNYKRNAYTKADLQCTNAYTKEVESYLPSDANINNVAKV 41
           ++YK NAYTKADLQCTNAYTKEVES LPSDANINNVAK+
Sbjct: 94  KSYKTNAYTKADLQCTNAYTKEVESCLPSDANINNVAKI 132

[Close]
BLAST of MELO3C033627 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 3   NYKRNAYTKADLQCTNAYTKEVESYLPSDANINNVAKVPFGLLKKILALQLVVLI 58
           NYKRNAYTKADLQC NAYTKEVES  PSDANINNVAK   G +  I     V++I
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMI 155

[Close]
BLAST of MELO3C033627 vs. ExPASy TrEMBL
Match: A0A5D3BTL5 (Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001620 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.8e-10
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 2   QNYKRNAYTKADLQCTNAYTKEVESYLPSDANINNVAKV 41
           ++YK NAYTKADLQCTNAYTKEVES LPSDANINNVAK+
Sbjct: 94  KSYKTNAYTKADLQCTNAYTKEVESCLPSDANINNVAKI 132

[Close]
BLAST of MELO3C033627 vs. ExPASy TrEMBL
Match: A0A1S3CL75 (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 3   NYKRNAYTKADLQCTNAYTKEVESYLPSDANINNVAKVPFGLLKKILALQLVVLI 58
           NYKRNAYTKADLQC NAYTKEVES  PSDANINNVAK   G +  I     V++I
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMI 155

The following BLAST results are available for this feature:
BLAST of MELO3C033627 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK03061.11.8e-0987.18putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa][more]
XP_008464326.11.2e-0869.09PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo][more]
BLAST of MELO3C033627 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033627 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTL58.8e-1087.18Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S3CL755.7e-0969.09AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=... [more]
BLAST of MELO3C033627 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033627.1MELO3C033627.1mRNA