MELO3C033608.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033608.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Defective in cullin neddylation protein
Location	chr09: 2202008 .. 2205249 (+)
RNA-Seq Expression	MELO3C033608.jh1
Synteny	MELO3C033608.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAAAAATGTTTTTGAGGCTTGTCCATTTGGGAGCGACCCTCAAGGTACGGTACAATTGTAAGCTTTCAAGGGAAAAGCTCATGCTTCAATACAAGATTAGAAGTTCGAGAGTTATATGATGACTGCATCTTACTTGAACAGGATTTGTTCTATGGTTGTACGACTGTGTCTTGAATTTCAAATAGCTATACAATGGGTGGAATAATACAACTAACAAATAGCTATATGATGGCGAATAGGATCCGTTCTATATGTACAACTTATGTGTCGTTGAGTTCCACATAGTTACATGATGTGTGTAATCAACTAATAGTTGTCTGCTTCAAATGTGGTAGTCCAATTTTGAATACGTTGGGGTACAACGCTGGTTGTGGTAATATAGCCTTCAAGTACTTCTATCACTAAAACTTATGAGATATACAGAATACAAAAAGAAAAGCTTCATAGTCTTGCAATGGATGGATGCTTGGTTTTTTTTTGTTCGGTAGTTTCATAAAATAAAAAATTTCTAATTAACTTGAGGATTAGGCTTCAATACTGGCCCCTACTTTTTAGAAATGTTGGGTATGCTTTTAAATAAGCAGAATTTTTCTTTTTCCTTACTACAATGTTTGGAGTTACTCAGTTGCGTTCTTCTATCAGGTTTTTGGCCTGTTCTAATTAACGATTTCGTCAAGCACATGAACAGGTTCGTTTTAGAGGCTTTTACAGATGCAACAAGTTTGAAGTTAAATGTAGTTAAATAGTTCTGGCTTGTATATCATTTTAAGTCTTCGGTATTACATGGTTTCATCCTTGCATTAACACTTGTCTGCTGACAATCATTATGCAGGTGGTCAGGATCTAATAAAGTCTCAAAGTTATGTGTAAGTGGAGACTCAGAATCACAATCAGGTGTGTTTGAATATTCTCTTTCTGGTATAGATTACGTTCAACTGTCTGAAAAAAAAATATATACTATTCTGCGTATTGGCTTTTCCATGGGATGCAGAATGTTATATAAGCCTTGTCTTACTGGTTTGAATTGTGTCAGGATTAAAATCTTTCCCTGGTTTGAAGAGGAAATTACCTGAGGACATGCAAATGGATGACATTGTGTCTCTGAGTGTTCCTAGAACTGGCGCCATGGAGTTGAGTCCTGTTACGAGCGACAAGAAAAGTAGATTTATGCTTGCAGGCCAGTGAACTTGGAGATAAACTTACCATCATGTACTGCAGATGAGAACGTAACTATGGTTGGACATAATAGTACATTAGGTTCCAAATCTCCATGTGCTGTTGAAGGTTGTCTGTCAAAAGGTTTTGCTGGAGTTTTCCCTGACACATTTGTTCATAGGATTGGACTGACCAAGAAAGGAAAGCGTCAATTCACATGAGCACAAGCGATTTATCCCTTGTGATACGTTTACAGGTTGTATGATCTACAATGTGGTTATATCTTCATTTCTGCTGTGGTACAGCATTATTAATTAGACAAGTTGATGATTTGGCAGCAAACTAGAACAAAGGATTGATTATGTTTCTATTGAGGGAAAGAGAAATTATTAGTCTGTTTCAATTCAAAGAACGAATAAGAGTGTACTGGTTTGTGCTTTCTTCAACCCTTCTTATCGTTCTATTTGGCTTTAAATGATATGGTTCAATCTGGAGATTGTGTTAAGCTGTCTTCATTTGTCTACTCTATCTTCATTTCAACTGATCCAAAAAATGAGTTTGGATTTGGAGATTGTGTCAAGCTGTCTTCTTTTGTCTACTCTATCTTCGTTTCAATCTGATCCAAAAAATGAGTTTGGATTCGCTCATTGAACATCTAAAACACTGGTTTTCTTATATGGATTGAAGAGTGTGTTTGATACACATCAAGAAAACATGACCTGATAAATTAAAAGATGATAAAAAGGCATAATGGGAATCAAACGAAAAGAAGCGACAGAGCTAAGAAAAATAGCATCATAGGACCGGATTAAGTCTAGAGGAGAGAGCTTGGCTTGAGTCTTGAGCCAAGTTAAAACGCCCAACCCAAAGCATCACCCTAGGAAAAGATAATTGGCCTCGACCTAGACCGACCCTTGCAAAATGTCAAACTGATACATGCGATTTTCATTCAATAAATATGATATATTGTACATCACACTCTTTTTCAATGAGGTTATAATGATGAAAATGAATTCATTATGTACACTTTTGAATATTGCATTCTGTTCTTCAACTTCTCTAAGCATCAACAGAACAAGAACTGACAGAAATTTGATATTTTGGATAGATGGGGTACCCTGATGTTTGAACCTGGGTAACTAGAAAGAACATATAAGAAAAGGGATTTTCATATATAATCAAACTTCATGAACTGATTCATTATTTACAACTTCAAAACTTGCCAAATCCCAGAAGAAGAAAAAAAAAAATTCATGAACGGCCAAATTTGGACTTTTAAAGCTGAGGGTTTGTAGTAAGTAATTGGCCGTAAATAATCAAACAATGACATTTCCAGAAAAGCCTATCAAATTAAAGAAAAAAAATAACTAGTTGAAAAAAGACGAAAATGAAAATGAAGAAGAATCTTCAGAACTTGGATCTTGTTCTTGTGTTGATGAGCCATCAACTTCAACCATAATTTCATCTTGTGATTCTGAATCGGAATCCTCTGATCCATGTTCCAATCCCGACTCAACATCCATCGGTTCACCATCGTTAACCCACAAATTAACTACAACCACCCGTCCTTCTCCACTTTCTCCACCTTCCATATCTTCATCTTCTTCAACATCACCACCACCAACACCACCGTCCTTTCTCCGATCATCCACCGGCATCACGAACCGACAAACCGGACACGTTCCACGAACATTCAACCATTTCTCAATACAATCAGAATGATACATATGTTTACACGGCATCTCCCTGGCTTCCTCGGCGACTTCAAATCCATCCAAGCAAATCGCACAATCTGTCCCCAATTCCGTAACCCCAACTCTGGGCATCGCATCGATCGAAGCCTTGGACGCCGGCAAGGGCCCAGATTTCTCCGATAAGTCACGAAGAAGAGAGTCAAGAACGTGTCCTTCGAAAACGACAACCGTTCGCGCAGCATGGTCGAGAACGACGATCTGGTTGAGGTTGGATCCGGTGGTGGTTCGAGCAAGGCCAAGGAGAAAAGGGAGAAGCATAGAAAGGGTCCGCGGAGGCGGTGGCGGTGAAGGAGAGGGAGAAGAATCGGAATCAGACATGGTCGTTTAG

mRNA sequence

ATGCATAAAAATGTTTTTGAGGCTTGTCCATTTGGGAGCGACCCTCAAGGATTAAAATCTTTCCCTGGTTTGAAGAGGAAATTACCTGAGGACATGCAAATGGATGACATTGTGTCTCTGAGTGTTCCTAGAACTGGCGCCATGGAGTTGAGTCCTGTTACGAGCGACAAGAAAAACGAAAATGAAAATGAAGAAGAATCTTCAGAACTTGGATCTTGTTCTTGTGTTGATGAGCCATCAACTTCAACCATAATTTCATCTTGTGATTCTGAATCGGAATCCTCTGATCCATGTTCCAATCCCGACTCAACATCCATCGGTTCACCATCGTTAACCCACAAATTAACTACAACCACCCGTCCTTCTCCACTTTCTCCACCTTCCATATCTTCATCTTCTTCAACATCACCACCACCAACACCACCGTCCTTTCTCCGATCATCCACCGGCATCACGAACCGACAAACCGGACACCAAATCGCACAATCTGTCCCCAATTCCGTAACCCCAACTCTGGGCATCGCATCGATCGAAGCCTTGGACGCCGGCAAGGGCCCAGATTTCTCCGATAAGTCACGAAGAAGAGAGTCAAGAACGTGTCCTTCGAAAACGACAACCGTTCGCGCAGCATGGTCGAGAACGACGATCTGGTTGAGGTTGGATCCGGTGGTGGTTCGAGCAAGGCCAAGGAGAAAAGGGAGAAGCATAGAAAGGGTCCGCGGAGGCGGTGGCGGTGAAGGAGAGGGAGAAGAATCGGAATCAGACATGGTCGTTTAG

Coding sequence (CDS)

ATGCATAAAAATGTTTTTGAGGCTTGTCCATTTGGGAGCGACCCTCAAGGATTAAAATCTTTCCCTGGTTTGAAGAGGAAATTACCTGAGGACATGCAAATGGATGACATTGTGTCTCTGAGTGTTCCTAGAACTGGCGCCATGGAGTTGAGTCCTGTTACGAGCGACAAGAAAAACGAAAATGAAAATGAAGAAGAATCTTCAGAACTTGGATCTTGTTCTTGTGTTGATGAGCCATCAACTTCAACCATAATTTCATCTTGTGATTCTGAATCGGAATCCTCTGATCCATGTTCCAATCCCGACTCAACATCCATCGGTTCACCATCGTTAACCCACAAATTAACTACAACCACCCGTCCTTCTCCACTTTCTCCACCTTCCATATCTTCATCTTCTTCAACATCACCACCACCAACACCACCGTCCTTTCTCCGATCATCCACCGGCATCACGAACCGACAAACCGGACACCAAATCGCACAATCTGTCCCCAATTCCGTAACCCCAACTCTGGGCATCGCATCGATCGAAGCCTTGGACGCCGGCAAGGGCCCAGATTTCTCCGATAAGTCACGAAGAAGAGAGTCAAGAACGTGTCCTTCGAAAACGACAACCGTTCGCGCAGCATGGTCGAGAACGACGATCTGGTTGAGGTTGGATCCGGTGGTGGTTCGAGCAAGGCCAAGGAGAAAAGGGAGAAGCATAGAAAGGGTCCGCGGAGGCGGTGGCGGTGAAGGAGAGGGAGAAGAATCGGAATCAGACATGGTCGTTTAG

Protein sequence

MHKNVFEACPFGSDPQGLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKKNENENEEESSELGSCSCVDEPSTSTIISSCDSESESSDPCSNPDSTSIGSPSLTHKLTTTTRPSPLSPPSISSSSSTSPPPTPPSFLRSSTGITNRQTGHQIAQSVPNSVTPTLGIASIEALDAGKGPDFSDKSRRRESRTCPSKTTTVRAAWSRTTIWLRLDPVVVRARPRRKGRSIERVRGGGGGEGEGEESESDMVV

Homology

[Close]

BLAST of MELO3C033608.jh1 vs. NCBI nr
Match: KAA0039491.1 (defective in cullin neddylation protein 1 [Cucumis melo var. makuwa] >TYK15246.1 defective in cullin neddylation protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 9.41e-19
Identity = 50/59 (84.75%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 5  VFEACPFG-SDPQ-GLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKKNEN 61
          V + C  G S+ Q GLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKKNEN
Sbjct: 25 VSKLCVSGDSESQSGLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKKNEN 83

[Close]

BLAST of MELO3C033608.jh1 vs. NCBI nr
Match: XP_022938999.1 (DCN1-like protein 1 [Cucurbita moschata] >XP_022939000.1 DCN1-like protein 1 [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 1.71e-10
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 17  GLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKK 58
           GLKSFPGLKRKLPEDMQ+DDI+SLS PRTG+MEL PVTS KK
Sbjct: 215 GLKSFPGLKRKLPEDMQVDDIMSLSDPRTGSMELIPVTSLKK 256

[Close]

BLAST of MELO3C033608.jh1 vs. NCBI nr
Match: KAA0039495.1 (defective in cullin neddylation protein 1 [Cucumis melo var. makuwa] >TYK15249.1 defective in cullin neddylation protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 4.47e-10
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 7   EACPFGSDPQGLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKK 58
           E+  F     GLK FPGLKRKLPEDMQMD IVS S PRTGAME +PVTS KK
Sbjct: 93  ESGVFEDSLSGLKFFPGLKRKLPEDMQMDGIVSPSDPRTGAMEFTPVTSVKK 144

[Close]

BLAST of MELO3C033608.jh1 vs. NCBI nr
Match: XP_023550121.1 (DCN1-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023550122.1 DCN1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 1.09e-09
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 17  GLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKK 58
           GLKSFPGLKRKLPEDMQ+D I+SLS PRTG+MEL PVTS KK
Sbjct: 215 GLKSFPGLKRKLPEDMQVDGIMSLSDPRTGSMELIPVTSVKK 256

[Close]

BLAST of MELO3C033608.jh1 vs. NCBI nr
Match: KAG6578581.1 (DCN1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 1.29e-09
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 17  GLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKK 58
           GLKSFPGLKRKLPEDMQ+DDI SLS PRTG+ EL PVTS KK
Sbjct: 215 GLKSFPGLKRKLPEDMQVDDITSLSDPRTGSTELIPVTSLKK 256

[Close]

BLAST of MELO3C033608.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CXX9 (Defective in cullin neddylation protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00200 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.55e-19
Identity = 50/59 (84.75%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 5  VFEACPFG-SDPQ-GLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKKNEN 61
          V + C  G S+ Q GLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKKNEN
Sbjct: 25 VSKLCVSGDSESQSGLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKKNEN 83

[Close]

BLAST of MELO3C033608.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FFS5 (Defective in cullin neddylation protein OS=Cucurbita moschata OX=3662 GN=LOC111445042 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.26e-11
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 17  GLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKK 58
           GLKSFPGLKRKLPEDMQ+DDI+SLS PRTG+MEL PVTS KK
Sbjct: 215 GLKSFPGLKRKLPEDMQVDDIMSLSDPRTGSMELIPVTSLKK 256

[Close]

BLAST of MELO3C033608.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TDI6 (Defective in cullin neddylation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00230 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.16e-10
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 7   EACPFGSDPQGLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKK 58
           E+  F     GLK FPGLKRKLPEDMQMD IVS S PRTGAME +PVTS KK
Sbjct: 93  ESGVFEDSLSGLKFFPGLKRKLPEDMQMDGIVSPSDPRTGAMEFTPVTSVKK 144

[Close]

BLAST of MELO3C033608.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CB35 (Defective in cullin neddylation protein OS=Cucumis melo OX=3656 GN=LOC103498486 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.11e-10
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 7   EACPFGSDPQGLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKK 58
           E+  F     GLK FPGLKRKLPEDMQMD IVS S PRTGAME +PVTS KK
Sbjct: 204 ESGVFEDSLSGLKFFPGLKRKLPEDMQMDGIVSPSDPRTGAMEFTPVTSVKK 255

[Close]

BLAST of MELO3C033608.jh1 vs. ExPASy TrEMBL
Match: A0A6J1JZZ8 (Defective in cullin neddylation protein OS=Cucurbita maxima OX=3661 GN=LOC111489407 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.26e-09
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 17  GLKSFPGLKRKLPEDMQMDDIVSLSVPRTGAMELSPVTSDKK 58
           GLKSFPGLKRK PEDMQ+DDI+S S PRTG+MEL PVTS KK
Sbjct: 266 GLKSFPGLKRKFPEDMQVDDIMSPSDPRTGSMELIPVTSVKK 307

The following BLAST results are available for this feature:

BLAST of MELO3C033608.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039491.1	9.41e-19	84.75	defective in cullin neddylation protein 1 [Cucumis melo var. makuwa] >TYK15246.1...	[more]
XP_022938999.1	1.71e-10	85.71	DCN1-like protein 1 [Cucurbita moschata] >XP_022939000.1 DCN1-like protein 1 [Cu...	[more]
KAA0039495.1	4.47e-10	71.15	defective in cullin neddylation protein 1 [Cucumis melo var. makuwa] >TYK15249.1...	[more]
XP_023550121.1	1.09e-09	83.33	DCN1-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023550122.1 DCN1-like prote...	[more]
KAG6578581.1	1.29e-09	83.33	DCN1-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MELO3C033608.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033608.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXX9	4.55e-19	84.75	Defective in cullin neddylation protein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1FFS5	8.26e-11	85.71	Defective in cullin neddylation protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A5A7TDI6	2.16e-10	71.15	Defective in cullin neddylation protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CB35	7.11e-10	71.15	Defective in cullin neddylation protein OS=Cucumis melo OX=3656 GN=LOC103498486 ...	[more]
A0A6J1JZZ8	2.26e-09	80.95	Defective in cullin neddylation protein OS=Cucurbita maxima OX=3661 GN=LOC111489...	[more]

BLAST of MELO3C033608.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033608.jh1.t1	MELO3C033608.jh1.t1	mRNA