MELO3C033604 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033604
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr09: 2020047 .. 2021003 (-)
RNA-Seq Expression	MELO3C033604
Synteny	MELO3C033604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAAATGGGTCTAAATTACTCATATCATAAAATAATGGTGGTGCATTATAAATTGAGTTGAATCTGAAGTGTGAATAAGCAAGAATCGAAAGGCCTTAGTTTGAGAATTCTTCCAATAGGCCTCAAAATGAATGACCAAAGAATGTTATCAATTCTTCTCCTTTCATGCTTTCTTTTTCTCATCCTCTCTCCTGGTATGATCTTCTTTCTCTCTCTTTTTCTTTTTATATATTTCTCTTTTCTTCATGGATTTTTTACTATTATTCATATATCCTCGATCTCTTCTCTCTTTCAAACCATTTTTTTTATGGTGTAGGAATTATGGGAACTGTGGAACAATATGCAACATCTCTTACTGATCCACGTCAAAAGGTAATTATAAATTAGAAGTTTTCTCTCTCATCAATACTTTTCGTTTTCTATTTATTTTAATCGATTTGTACTTCTTAGAACCTTAATTTTAGATCGACCATTTCCACTTTGTCTTAGTTTTTTATGGCATAAGAACCAAAATGAACCATGAGATTAAAAGCATAGACAAAAATCAACGAGTGAAATAATTGTGTTTTATGTTTGCAGAAAATGAGTGAAAGAAAATGGAGAAAGATGATGATTCAAACAAACGATGACTATCATGACCCAGGACCTAATCAGCCAGGAGCCTATCGTGATCCAAGATCTAACAATCCATATTATGCTCCTCTTGCAACACCTTAATTATCTAGATCACAACACCTTAATTATCTAAATCATATATATCGTCTTTTTAAATGTACTTTCTCATCAAAATGCATGAACTTCAAATTTCGAGTGTGTAATCCATGCACGTGCATGGACATGAAAAGTTTTTAAATTAGAGTAATAATCAATGCATATTATTTGGACCTTCAAATTTGTGATTTCTTAATTTAGTTTTTCTTCTCTAAGCTATCTATATGCACTAATCTTAATCCAC

mRNA sequence

CCAAAAATGGGTCTAAATTACTCATATCATAAAATAATGGTGGTGCATTATAAATTGAGTTGAATCTGAAGTGTGAATAAGCAAGAATCGAAAGGCCTTAGTTTGAGAATTCTTCCAATAGGCCTCAAAATGAATGACCAAAGAATGTTATCAATTCTTCTCCTTTCATGCTTTCTTTTTCTCATCCTCTCTCCTGGAATTATGGGAACTGTGGAACAATATGCAACATCTCTTACTGATCCACGTCAAAAGAAAATGAGTGAAAGAAAATGGAGAAAGATGATGATTCAAACAAACGATGACTATCATGACCCAGGACCTAATCAGCCAGGAGCCTATCGTGATCCAAGATCTAACAATCCATATTATGCTCCTCTTGCAACACCTTAATTATCTAGATCACAACACCTTAATTATCTAAATCATATATATCGTCTTTTTAAATGTACTTTCTCATCAAAATGCATGAACTTCAAATTTCGAGTGTGTAATCCATGCACGTGCATGGACATGAAAAGTTTTTAAATTAGAGTAATAATCAATGCATATTATTTGGACCTTCAAATTTGTGATTTCTTAATTTAGTTTTTCTTCTCTAAGCTATCTATATGCACTAATCTTAATCCAC

Coding sequence (CDS)

ATGAATGACCAAAGAATGTTATCAATTCTTCTCCTTTCATGCTTTCTTTTTCTCATCCTCTCTCCTGGAATTATGGGAACTGTGGAACAATATGCAACATCTCTTACTGATCCACGTCAAAAGAAAATGAGTGAAAGAAAATGGAGAAAGATGATGATTCAAACAAACGATGACTATCATGACCCAGGACCTAATCAGCCAGGAGCCTATCGTGATCCAAGATCTAACAATCCATATTATGCTCCTCTTGCAACACCTTAA

Protein sequence

MNDQRMLSILLLSCFLFLILSPGIMGTVEQYATSLTDPRQKKMSERKWRKMMIQTNDDYHDPGPNQPGAYRDPRSNNPYYAPLATP

Homology

[Close]

BLAST of MELO3C033604 vs. NCBI nr
Match: XP_031741770.1 (probable calcium-binding protein CML47 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-10
Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 1  MNDQRMLSILLLSCFLFLILSPGI----MGTVEQYATSLTDPRQKKMSERKWRKMMI-QT 60
          M DQR+L ILL+SCFLFL LSPG     M T+EQ A SLT P +K+MS  KWR +M+ Q 
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQ-AASLT-PHEKEMSGGKWRDVMVDQL 60

Query: 61 NDDYHDPGPNQPGAYRDPRSNN------PYYAPLATP 87
           +DYH PGPN+P +   P S        P + PL+ P
Sbjct: 61 LEDYHGPGPNKPRSITAPNSATPSSPKFPCFLPLSIP 95

[Close]

BLAST of MELO3C033604 vs. NCBI nr
Match: KGN52469.1 (hypothetical protein Csa_008670 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-10
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1  MNDQRMLSILLLSCFLFLILSPGI----MGTVEQYATSLTDPRQKKMSERKWRKMMI-QT 60
          M DQR+L ILL+SCFLFL LSPG     M T+EQ A SLT P +K+MS  KWR +M+ Q 
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQ-AASLT-PHEKEMSGGKWRDVMVDQL 60

Query: 61 NDDYHDPGPNQPGAYRDPRSNNP 79
           +DYH PGPN+P +   P S  P
Sbjct: 61 LEDYHGPGPNKPRSITAPNSATP 81

[Close]

BLAST of MELO3C033604 vs. ExPASy TrEMBL
Match: A0A0A0KU89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-10
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1  MNDQRMLSILLLSCFLFLILSPGI----MGTVEQYATSLTDPRQKKMSERKWRKMMI-QT 60
          M DQR+L ILL+SCFLFL LSPG     M T+EQ A SLT P +K+MS  KWR +M+ Q 
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQ-AASLT-PHEKEMSGGKWRDVMVDQL 60

Query: 61 NDDYHDPGPNQPGAYRDPRSNNP 79
           +DYH PGPN+P +   P S  P
Sbjct: 61 LEDYHGPGPNKPRSITAPNSATP 81

The following BLAST results are available for this feature:

BLAST of MELO3C033604 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741770.1	9.6e-10	50.52	probable calcium-binding protein CML47 [Cucumis sativus]	[more]
KGN52469.1	9.6e-10	55.42	hypothetical protein Csa_008670 [Cucumis sativus]	[more]

BLAST of MELO3C033604 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU89	4.7e-10	55.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1	[more]

BLAST of MELO3C033604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033604.1	MELO3C033604.1	mRNA