MELO3C033504.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033504.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCell division protein ftsH
Locationchr08: 33186211 .. 33187165 (+)
RNA-Seq ExpressionMELO3C033504.jh1
SyntenyMELO3C033504.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATTAGGGTTTTCAAACGCCACAAACGCTGTTTCTTTCGCAGACATTTTAGGTTCGGGCAAGTCGGTTCCATCACTGTGTTCAGAAGCATTCTTCCCTTTCGGTGAGTGTTTTTATTATGTTCTTATCTAAAATTAAGGGGGTATATATGGAACTCCCTTTCATGTGTAGAGATACATCGTCAACAGCTAATTAGGATTTTCAAAAACTCATTATTCCGTAGACATTCAACTTTCGCGCAAGTCGATTCCATCACTCTATTTAGAAAGTCGGTTCCCTTTCGATGAGTGTTTATTTAAAAGTCTTCCATCACTGTGTTTAAAATGTCGAATAAATTAGGGTTCTGGTGATGATTATCTTTTTAAATCACCTTAAAGTGTAGAGAGTCCGTGTAAAACAAATTTCAAAAGTAATGCATGTTGTATATATTGAATGATTAAATCTAGTTTGAAGTCTGTATATATTGAAGTGTTGATTTAGTGTTTAAACAAGCAATTTTAAGTACAGATTTTCTGTGAAAACAACAAATTAAGTAATGTATGTTGTACAATTTTAAGTGCAGATTCTCTGTGAAAACAACAAAATGGTTCGTAGAAGTGAAAGATGCCTAGAATCGAGGATGAAAAATATAAAATCAAACAAGGATGAACCTATTGTCATCGACGATAATATAGAGGTATATTTCTTATTTACTGAATTTAAATTTTAAATTGTACAAATAATTAAACATAAATATAACATGTGTATATATGGTAGGAGGAAGTACGAAATGAAGAACCAATAGAATACCAACCACTACAAACAATGTATCCAAAGGATGATGAAGAAGAATTAAGAGGACTGACAGGTACACAGATTGTTGTGTACCAAGATCAGAAGTTCGAGAAAACGAATGTGGTGTTCGAAACTCCAGAAGCAAAAATGTTAAAAAACACAAAGAAAAATAATCCAAAAC

mRNA sequence

TCATTAGGGTTTTCAAACGCCACAAACGCTGTTTCTTTCGCAGACATTTTAGGTTCGGGCAAGTCGGTTCCATCACTGTGTTCAGAAGCATTCTTCCCTTTCGATTCTCTGTGAAAACAACAAAATGGTTCGTAGAAGTGAAAGATGCCTAGAATCGAGGATGAAAAATATAAAATCAAACAAGGATGAACCTATTGTCATCGACGATAATATAGAGGAGGAAGTACGAAATGAAGAACCAATAGAATACCAACCACTACAAACAATGTATCCAAAGGATGATGAAGAAGAATTAAGAGGACTGACAGGTACACAGATTGTTGTGTACCAAGATCAGAAGTTCGAGAAAACGAATGTGGTGTTCGAAACTCCAGAAGCAAAAATGTTAAAAAACACAAAGAAAAATAATCCAAAAC

Coding sequence (CDS)

ATGGTTCGTAGAAGTGAAAGATGCCTAGAATCGAGGATGAAAAATATAAAATCAAACAAGGATGAACCTATTGTCATCGACGATAATATAGAGGAGGAAGTACGAAATGAAGAACCAATAGAATACCAACCACTACAAACAATGTATCCAAAGGATGATGAAGAAGAATTAAGAGGACTGACAGGTACACAGATTGTTGTGTACCAAGATCAGAAGTTCGAGAAAACGAATGTGGTGTTCGAAACTCCAGAAGCAAAAATGTTAAAAAACACAAAGAAAAATAATCCAAAA

Protein sequence

MVRRSERCLESRMKNIKSNKDEPIVIDDNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGLTGTQIVVYQDQKFEKTNVVFETPEAKMLKNTKKNNPK
Homology
BLAST of MELO3C033504.jh1 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (315), Expect = 6.60e-35
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 0

Query: 1  MVRRSERCLESRMKNIKSNKDEPIVIDDNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGL 60
          MVRRSERCL  ++K IKSNKD+PIVI DN EEEVR EEPI+Y+PLQT+Y  DDE+ELRG 
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TGTQIVVYQDQKFEKTNVVFETPEAKMLKNTK 92
          T T IVVYQ+QKF KTNVVFETP+AKM K+ K
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNK 92

BLAST of MELO3C033504.jh1 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (324), Expect = 4.80e-34
Identity = 63/89 (70.79%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 1  MVRRSERCLESRMKNIKSNKDEPIVIDDNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGL 60
          MVRRSERCL SR+K IKS+KD  I+I+DN+EE++RNEEP++YQP+Q +YPKDDEEEL+G 
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TGTQIVVYQDQKFEKTNVVFETPEAKMLK 89
          TGTQIVVY D+KF +T++VF+TPEAKM K
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTPEAKMPK 89

BLAST of MELO3C033504.jh1 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.97e-15
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 0

Query: 1  MVRRSERCLESRMKNIKSNKDEPIVIDDNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGL 60
          MVR+S RCL SRMK++KSNKD+PI+I+D              +   T+Y  DDE ELRG 
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 TGTQIVVYQDQKFEKTNVVFETPEAKM 87
          T TQI++Y+++K+ K +VVFETP+ KM
Sbjct: 61 TCTQIMLYEEKKYVKPDVVFETPKTKM 74

BLAST of MELO3C033504.jh1 vs. NCBI nr
Match: KAA0035692.1 (Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 2.58e-15
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 0

Query: 28 DNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGLTGTQIVVYQDQKFEKTNVVFETPEAKM 87
          D+IE+E R EE I Y+PLQ +YP D E ELRG TGTQIV+Y+++K+ K +VVFETPE KM
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKM 62

BLAST of MELO3C033504.jh1 vs. NCBI nr
Match: XP_008464749.1 (PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 3.42e-14
Identity = 34/53 (64.15%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 11  SRMKNIKSNKDEPIVIDDNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGLTGT 63
           +++K IKS+KD  I+I+DN EE++RNEEP++YQP+QT+YPKDDEEEL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

BLAST of MELO3C033504.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 3.20e-35
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 0

Query: 1  MVRRSERCLESRMKNIKSNKDEPIVIDDNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGL 60
          MVRRSERCL  ++K IKSNKD+PIVI DN EEEVR EEPI+Y+PLQT+Y  DDE+ELRG 
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TGTQIVVYQDQKFEKTNVVFETPEAKMLKNTK 92
          T T IVVYQ+QKF KTNVVFETP+AKM K+ K
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNK 92

BLAST of MELO3C033504.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 2.32e-34
Identity = 63/89 (70.79%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 1  MVRRSERCLESRMKNIKSNKDEPIVIDDNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGL 60
          MVRRSERCL SR+K IKS+KD  I+I+DN+EE++RNEEP++YQP+Q +YPKDDEEEL+G 
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TGTQIVVYQDQKFEKTNVVFETPEAKMLK 89
          TGTQIVVY D+KF +T++VF+TPEAKM K
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTPEAKMPK 89

BLAST of MELO3C033504.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.52e-16
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 0

Query: 1  MVRRSERCLESRMKNIKSNKDEPIVIDDNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGL 60
          MVR+S RCL SRMK++KSNKD+PI+I+D              +   T+Y  DDE ELRG 
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 TGTQIVVYQDQKFEKTNVVFETPEAKM 87
          T TQI++Y+++K+ K +VVFETP+ KM
Sbjct: 61 TCTQIMLYEEKKYVKPDVVFETPKTKM 74

BLAST of MELO3C033504.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SWP5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003940 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.25e-15
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 0

Query: 28 DNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGLTGTQIVVYQDQKFEKTNVVFETPEAKM 87
          D+IE+E R EE I Y+PLQ +YP D E ELRG TGTQIV+Y+++K+ K +VVFETPE KM
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKM 62

BLAST of MELO3C033504.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CM64 (uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502558 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.65e-14
Identity = 34/53 (64.15%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 11  SRMKNIKSNKDEPIVIDDNIEEEVRNEEPIEYQPLQTMYPKDDEEELRGLTGT 63
           +++K IKS+KD  I+I+DN EE++RNEEP++YQP+QT+YPKDDEEEL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0043162.16.60e-3573.91uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
TYK30586.14.80e-3470.79protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0066916.11.97e-1550.57Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ... [more]
KAA0035692.12.58e-1563.33Cell division protein ftsH [Cucumis melo var. makuwa][more]
XP_008464749.13.42e-1464.15PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TIM33.20e-3573.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3X12.32e-3470.79Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A5A7VKG59.52e-1650.57Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7SWP51.25e-1563.33Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A1S3CM641.65e-1464.15uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033504.jh1.t1MELO3C033504.jh1.t1mRNA